Wall clock time and date at job start Fri Apr 10 2020 18:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47225 * 275.32705 * 3 2 1 5 5 H 1.48508 * 109.47063 * 35.32451 * 3 2 1 6 6 H 1.48500 * 109.47308 * 155.32130 * 3 2 1 7 7 C 1.38810 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00091 * 337.57308 * 7 2 1 9 9 N 1.36937 * 120.00113 * 157.58059 * 7 2 1 10 10 C 1.43464 * 118.93873 * 321.10247 * 9 7 2 11 11 C 1.53800 * 107.96020 * 273.60445 * 10 9 7 12 12 C 1.47137 * 111.83993 * 281.67527 * 11 10 9 13 13 N 1.48206 * 110.20538 * 58.37967 * 12 11 10 14 14 C 1.34779 * 119.96907 * 102.37917 * 13 12 11 15 15 O 1.21285 * 119.99856 * 183.13780 * 14 13 12 16 16 C 1.50692 * 120.00299 * 3.14048 * 14 13 12 17 17 H 1.09001 * 108.56884 * 312.94133 * 16 14 13 18 18 C 1.51783 * 108.61913 * 70.74154 * 16 14 13 19 19 C 1.53025 * 110.87600 * 188.12389 * 18 16 14 20 20 N 1.47194 * 108.64425 * 273.52716 * 19 18 16 21 21 C 1.33373 * 120.42885 * 71.99025 * 20 19 18 22 22 O 1.21280 * 119.88781 * 179.70010 * 21 20 19 23 23 C 1.51418 * 120.21690 * 359.67940 * 21 20 19 24 24 C 1.51791 * 108.61945 * 195.00705 * 16 14 13 25 25 C 1.43728 * 119.98364 * 282.18372 * 13 12 11 26 26 C 1.48861 * 118.94201 * 141.07358 * 9 7 2 27 27 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.76461 * 153.99389 * 10 9 7 29 29 H 1.08998 * 109.76457 * 33.21669 * 10 9 7 30 30 H 1.08995 * 109.00690 * 161.06190 * 11 10 9 31 31 H 1.09008 * 109.00654 * 42.27470 * 11 10 9 32 32 H 1.09003 * 109.32290 * 178.56602 * 12 11 10 33 33 H 1.09001 * 109.31996 * 298.19679 * 12 11 10 34 34 H 1.08997 * 109.19468 * 308.48253 * 18 16 14 35 35 H 1.08998 * 109.19552 * 67.75362 * 18 16 14 36 36 H 1.09003 * 109.61840 * 153.77961 * 19 18 16 37 37 H 1.08998 * 109.75089 * 33.35675 * 19 18 16 38 38 H 0.96995 * 119.78450 * 251.96824 * 20 19 18 39 39 H 1.08996 * 109.63865 * 169.07820 * 23 21 20 40 40 H 1.09007 * 109.79927 * 48.57888 * 23 21 20 41 41 H 1.09008 * 109.21923 * 292.38896 * 24 16 14 42 42 H 1.08999 * 109.22534 * 51.73439 * 24 16 14 43 43 H 1.09002 * 108.97642 * 330.20364 * 25 13 12 44 44 H 1.09006 * 108.85931 * 211.61694 * 25 13 12 45 45 H 1.08997 * 109.48082 * 260.62819 * 26 9 7 46 46 H 1.08997 * 109.47528 * 20.66343 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5085 2.6176 0.8096 6 1 3.5995 1.4103 0.5846 7 6 2.0102 -1.2022 -0.0005 8 1 1.5314 -2.1023 0.3559 9 7 3.3019 -1.2469 -0.4528 10 6 3.6645 -0.4608 -1.5969 11 6 3.3526 -1.2855 -2.8571 12 6 4.3825 -2.3047 -3.1130 13 7 4.4994 -3.2173 -1.9511 14 6 3.9419 -4.4434 -1.9992 15 8 3.9880 -5.1690 -1.0284 16 6 3.2613 -4.9128 -3.2590 17 1 2.6026 -4.1201 -3.6137 18 6 4.3206 -5.1678 -4.3158 19 6 3.6774 -5.4531 -5.6748 20 7 3.3730 -6.8908 -5.7587 21 6 2.3774 -7.4134 -5.0416 22 8 2.1316 -8.5983 -5.1224 23 6 1.5532 -6.5324 -4.1265 24 6 2.4187 -6.1316 -2.9294 25 6 5.2108 -2.7958 -0.7755 26 6 4.2849 -2.1091 0.2588 27 1 -0.4850 0.8402 0.0004 28 1 4.7289 -0.2288 -1.5624 29 1 3.0854 0.4626 -1.6081 30 1 3.2954 -0.6153 -3.7147 31 1 2.3891 -1.7789 -2.7290 32 1 4.1087 -2.8800 -3.9974 33 1 5.3406 -1.8141 -3.2843 34 1 4.9615 -4.2902 -4.3998 35 1 4.9249 -6.0246 -4.0181 36 1 4.3686 -5.1785 -6.4716 37 1 2.7570 -4.8779 -5.7747 38 1 3.8998 -7.4617 -6.3396 39 1 0.6788 -7.0822 -3.7785 40 1 1.2341 -5.6389 -4.6632 41 1 3.0752 -6.9615 -2.6675 42 1 1.7739 -5.9033 -2.0808 43 1 5.9940 -2.0959 -1.0670 44 1 5.6724 -3.6675 -0.3114 45 1 4.8839 -1.4971 0.9331 46 1 3.7538 -2.8688 0.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981692719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:25 Heat of formation + Delta-G solvation = -38.963944 kcal Electronic energy + Delta-G solvation = -27715.784046 eV Core-core repulsion = 24027.237562 eV Total energy + Delta-G solvation = -3688.546483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.82500 -39.65802 -37.43496 -36.50636 -34.57861 -33.97586 -32.29989 -31.73861 -31.18557 -28.29253 -26.94102 -25.80236 -24.35397 -23.64796 -22.61695 -20.96875 -20.17803 -19.76885 -18.68159 -17.45064 -17.41888 -16.69317 -16.41271 -16.05427 -15.46693 -15.12260 -14.80301 -14.49638 -14.25541 -13.84099 -13.76148 -13.71260 -13.20091 -13.14012 -12.88330 -12.73501 -12.43828 -12.38446 -12.14031 -11.78736 -11.73823 -11.52094 -11.23174 -11.00453 -10.91857 -10.85344 -10.59895 -10.48685 -10.25543 -9.87744 -9.84602 -9.65800 -9.52326 -9.17997 -8.54416 -8.25501 -6.80263 -6.02089 -3.43491 2.53646 2.92147 3.11152 3.24713 3.31117 3.42791 3.47165 4.33948 4.37930 4.48135 4.48346 4.57239 4.91169 4.97045 5.03653 5.07427 5.14644 5.22646 5.25906 5.28948 5.37078 5.42477 5.51659 5.58982 5.69258 5.71740 5.81689 5.86962 6.03212 6.05545 6.07760 6.20635 6.22765 6.23443 6.52265 6.60585 6.63437 6.70730 6.87081 7.05163 7.08547 7.70913 8.07847 8.09478 8.36675 8.52590 9.02425 9.70008 10.07784 11.13753 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.004174 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.129897 B = 6707.108674 C = 6965.423028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.036 3.964 3 Si 0.879 3.121 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.171 4.171 12 C 0.116 3.884 13 N -0.586 5.586 14 C 0.521 3.479 15 O -0.543 6.543 16 C -0.107 4.107 17 H 0.098 0.902 18 C -0.138 4.138 19 C 0.110 3.890 20 N -0.726 5.726 21 C 0.520 3.480 22 O -0.555 6.555 23 C -0.139 4.139 24 C -0.093 4.093 25 C 0.102 3.898 26 C 0.128 3.872 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.399 0.601 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.834 -5.847 -13.583 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.164 4.164 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.396 4.396 8 H 0.092 0.908 9 N -0.325 5.325 10 C 0.026 3.974 11 C -0.212 4.212 12 C -0.006 4.006 13 N -0.317 5.317 14 C 0.309 3.691 15 O -0.421 6.421 16 C -0.128 4.128 17 H 0.116 0.884 18 C -0.177 4.177 19 C -0.014 4.014 20 N -0.378 5.378 21 C 0.308 3.692 22 O -0.433 6.433 23 C -0.179 4.179 24 C -0.131 4.131 25 C -0.023 4.023 26 C 0.003 3.997 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.234 0.766 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.482 -6.621 -12.932 17.915 hybrid contribution 0.584 1.210 -0.186 1.356 sum 11.066 -5.411 -13.118 17.995 Atomic orbital electron populations 1.69878 1.05990 1.26618 1.51612 1.25482 0.95050 0.97617 0.98252 0.86919 0.80585 0.84772 0.76737 1.21487 1.23042 1.19680 1.18791 0.86422 0.94173 1.40185 0.90765 1.43896 1.07752 1.51745 1.29136 1.20622 0.96785 0.93762 0.86241 1.21795 1.00597 0.98645 1.00151 1.20965 0.99848 0.92054 0.87725 1.47386 1.54295 1.14026 1.16018 1.20381 0.78231 0.81232 0.89242 1.90673 1.58487 1.55415 1.37485 1.20992 0.97737 0.99832 0.94268 0.88396 1.21955 0.97994 1.03712 0.94018 1.21793 1.01293 0.81008 0.97332 1.45965 1.34990 1.10466 1.46418 1.20686 0.80354 0.88433 0.79771 1.90743 1.69507 1.16790 1.66288 1.22022 0.99056 1.00453 0.96359 1.21013 0.98097 0.96973 0.97009 1.21617 0.94349 0.99165 0.87156 1.22120 0.91393 0.93472 0.92747 0.92769 0.94633 0.93159 0.92283 0.90268 0.90285 0.91657 0.89426 0.90471 0.89071 0.89989 0.76569 0.88056 0.88994 0.90842 0.89410 0.91924 0.90750 0.95161 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.97 55.49 0.78 -26.04 16 2 C 0.04 1.02 5.28 -17.43 -0.09 0.92 16 3 Si 0.88 21.54 25.10 -169.99 -4.27 17.27 16 4 H -0.29 -6.71 6.69 56.52 0.38 -6.34 16 5 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.27 -7.25 9.55 -15.06 -0.14 -7.39 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -13.51 2.10 -172.00 -0.36 -13.88 16 10 C 0.15 3.00 4.56 -5.23 -0.02 2.98 16 11 C -0.17 -2.71 5.63 -29.13 -0.16 -2.87 16 12 C 0.12 1.41 4.78 -5.92 -0.03 1.38 16 13 N -0.59 -8.75 2.44 -176.58 -0.43 -9.18 16 14 C 0.52 8.24 6.79 -10.99 -0.07 8.17 16 15 O -0.54 -10.68 15.56 5.55 0.09 -10.59 16 16 C -0.11 -1.25 1.29 -93.01 -0.12 -1.37 16 17 H 0.10 1.09 6.96 -51.93 -0.36 0.72 16 18 C -0.14 -1.13 4.47 -27.34 -0.12 -1.26 16 19 C 0.11 0.67 6.46 -3.65 -0.02 0.64 16 20 N -0.73 -6.13 5.27 -59.88 -0.32 -6.45 16 21 C 0.52 6.25 7.06 -11.26 -0.08 6.17 16 22 O -0.56 -9.04 17.92 5.56 0.10 -8.94 16 23 C -0.14 -1.50 5.57 -27.50 -0.15 -1.65 16 24 C -0.09 -1.17 4.24 -27.31 -0.12 -1.29 16 25 C 0.10 1.61 5.24 -4.52 -0.02 1.58 16 26 C 0.13 2.52 6.85 -1.75 -0.01 2.51 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.04 0.62 7.59 -51.93 -0.39 0.22 16 29 H 0.05 1.12 3.16 -51.93 -0.16 0.95 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.51 7.91 -51.92 -0.41 1.10 16 32 H 0.08 0.72 4.32 -51.93 -0.22 0.49 16 33 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.09 0.61 5.85 -51.93 -0.30 0.31 16 35 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.46 6.73 -51.93 -0.35 0.11 16 38 H 0.40 2.90 8.91 -40.82 -0.36 2.53 16 39 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 40 H 0.09 0.80 6.79 -51.93 -0.35 0.45 16 41 H 0.07 1.03 7.83 -51.92 -0.41 0.62 16 42 H 0.09 1.28 8.00 -51.93 -0.42 0.86 16 43 H 0.06 0.84 7.73 -51.93 -0.40 0.44 16 44 H 0.07 1.17 7.42 -51.93 -0.39 0.78 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.36 7.97 -51.93 -0.41 0.95 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -35.21 343.23 -7.47 -42.68 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.05 Total: 1.43 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.18 Total: 8.52 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.33 Total: -55.54 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.19 Total: -19.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.27 Total: 17.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.21 -7.47 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981692719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.720 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds