Wall clock time and date at job start Fri Apr 10 2020 18:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00193 * 2 1 4 4 H 1.48501 * 109.47225 * 275.32705 * 3 2 1 5 5 H 1.48508 * 109.47063 * 35.32451 * 3 2 1 6 6 H 1.48500 * 109.47308 * 155.32130 * 3 2 1 7 7 C 1.38810 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00091 * 337.57308 * 7 2 1 9 9 N 1.36937 * 120.00113 * 157.58059 * 7 2 1 10 10 C 1.43464 * 118.93873 * 321.10247 * 9 7 2 11 11 C 1.53800 * 107.96020 * 273.60445 * 10 9 7 12 12 C 1.47137 * 111.83993 * 281.67527 * 11 10 9 13 13 N 1.48206 * 110.20538 * 58.37967 * 12 11 10 14 14 C 1.34779 * 119.96907 * 102.37917 * 13 12 11 15 15 O 1.21285 * 119.99856 * 183.13780 * 14 13 12 16 16 C 1.50692 * 120.00299 * 3.14048 * 14 13 12 17 17 H 1.09001 * 108.56884 * 312.94133 * 16 14 13 18 18 C 1.51783 * 108.61913 * 70.74154 * 16 14 13 19 19 C 1.53025 * 110.87600 * 188.12389 * 18 16 14 20 20 N 1.47194 * 108.64425 * 273.52716 * 19 18 16 21 21 C 1.33373 * 120.42885 * 71.99025 * 20 19 18 22 22 O 1.21280 * 119.88781 * 179.70010 * 21 20 19 23 23 C 1.51418 * 120.21690 * 359.67940 * 21 20 19 24 24 C 1.51791 * 108.61945 * 195.00705 * 16 14 13 25 25 C 1.43728 * 119.98364 * 282.18372 * 13 12 11 26 26 C 1.48861 * 118.94201 * 141.07358 * 9 7 2 27 27 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.76461 * 153.99389 * 10 9 7 29 29 H 1.08998 * 109.76457 * 33.21669 * 10 9 7 30 30 H 1.08995 * 109.00690 * 161.06190 * 11 10 9 31 31 H 1.09008 * 109.00654 * 42.27470 * 11 10 9 32 32 H 1.09003 * 109.32290 * 178.56602 * 12 11 10 33 33 H 1.09001 * 109.31996 * 298.19679 * 12 11 10 34 34 H 1.08997 * 109.19468 * 308.48253 * 18 16 14 35 35 H 1.08998 * 109.19552 * 67.75362 * 18 16 14 36 36 H 1.09003 * 109.61840 * 153.77961 * 19 18 16 37 37 H 1.08998 * 109.75089 * 33.35675 * 19 18 16 38 38 H 0.96995 * 119.78450 * 251.96824 * 20 19 18 39 39 H 1.08996 * 109.63865 * 169.07820 * 23 21 20 40 40 H 1.09007 * 109.79927 * 48.57888 * 23 21 20 41 41 H 1.09008 * 109.21923 * 292.38896 * 24 16 14 42 42 H 1.08999 * 109.22534 * 51.73439 * 24 16 14 43 43 H 1.09002 * 108.97642 * 330.20364 * 25 13 12 44 44 H 1.09006 * 108.85931 * 211.61694 * 25 13 12 45 45 H 1.08997 * 109.48082 * 260.62819 * 26 9 7 46 46 H 1.08997 * 109.47528 * 20.66343 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3852 2.1114 -1.3940 5 1 1.5085 2.6176 0.8096 6 1 3.5995 1.4103 0.5846 7 6 2.0102 -1.2022 -0.0005 8 1 1.5314 -2.1023 0.3559 9 7 3.3019 -1.2469 -0.4528 10 6 3.6645 -0.4608 -1.5969 11 6 3.3526 -1.2855 -2.8571 12 6 4.3825 -2.3047 -3.1130 13 7 4.4994 -3.2173 -1.9511 14 6 3.9419 -4.4434 -1.9992 15 8 3.9880 -5.1690 -1.0284 16 6 3.2613 -4.9128 -3.2590 17 1 2.6026 -4.1201 -3.6137 18 6 4.3206 -5.1678 -4.3158 19 6 3.6774 -5.4531 -5.6748 20 7 3.3730 -6.8908 -5.7587 21 6 2.3774 -7.4134 -5.0416 22 8 2.1316 -8.5983 -5.1224 23 6 1.5532 -6.5324 -4.1265 24 6 2.4187 -6.1316 -2.9294 25 6 5.2108 -2.7958 -0.7755 26 6 4.2849 -2.1091 0.2588 27 1 -0.4850 0.8402 0.0004 28 1 4.7289 -0.2288 -1.5624 29 1 3.0854 0.4626 -1.6081 30 1 3.2954 -0.6153 -3.7147 31 1 2.3891 -1.7789 -2.7290 32 1 4.1087 -2.8800 -3.9974 33 1 5.3406 -1.8141 -3.2843 34 1 4.9615 -4.2902 -4.3998 35 1 4.9249 -6.0246 -4.0181 36 1 4.3686 -5.1785 -6.4716 37 1 2.7570 -4.8779 -5.7747 38 1 3.8998 -7.4617 -6.3396 39 1 0.6788 -7.0822 -3.7785 40 1 1.2341 -5.6389 -4.6632 41 1 3.0752 -6.9615 -2.6675 42 1 1.7739 -5.9033 -2.0808 43 1 5.9940 -2.0959 -1.0670 44 1 5.6724 -3.6675 -0.3114 45 1 4.8839 -1.4971 0.9331 46 1 3.7538 -2.8688 0.8321 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981692719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:23 Heat of formation + Delta-G solvation = -66.001592 kcal Electronic energy + Delta-G solvation = -27716.956486 eV Core-core repulsion = 24027.237562 eV Total energy + Delta-G solvation = -3689.718924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.86853 -40.72914 -38.84924 -37.51612 -36.12251 -34.88903 -33.66919 -33.57948 -32.21296 -29.66197 -27.96572 -27.21929 -25.65226 -24.93182 -23.86731 -22.03028 -21.57064 -20.71757 -19.82705 -18.63922 -18.50041 -18.26541 -17.60377 -17.22049 -17.07911 -16.38665 -15.82579 -15.75779 -15.34734 -15.22846 -15.03161 -14.81094 -14.68423 -14.40756 -14.20047 -13.82082 -13.77921 -13.47557 -13.29863 -13.18484 -12.88894 -12.72121 -12.59387 -12.41631 -12.22874 -12.04019 -11.88163 -11.82699 -11.69078 -11.51964 -11.42632 -10.87307 -10.69702 -10.57313 -10.06528 -9.54437 -8.66053 -8.18541 -5.56609 1.30239 1.43758 1.54430 1.58457 1.72382 2.20087 2.40426 2.42295 3.09938 3.39687 3.41860 3.48293 3.65531 3.82514 4.03451 4.14348 4.18588 4.23737 4.31850 4.36953 4.41284 4.49159 4.50749 4.57337 4.66305 4.71288 4.75338 4.80804 4.87745 4.91813 5.01446 5.05062 5.08239 5.08452 5.16359 5.18742 5.30382 5.57121 5.83958 5.93884 5.99201 6.16072 6.25717 6.54327 7.07765 7.25096 7.31331 7.69555 8.05848 9.02262 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.004174 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.129897 B = 6707.108674 C = 6965.423028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.019 4.019 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.315 1.315 6 H -0.263 1.263 7 C -0.257 4.257 8 H 0.016 0.984 9 N -0.610 5.610 10 C 0.139 3.861 11 C -0.161 4.161 12 C 0.112 3.888 13 N -0.588 5.588 14 C 0.509 3.491 15 O -0.595 6.595 16 C -0.099 4.099 17 H 0.111 0.889 18 C -0.131 4.131 19 C 0.109 3.891 20 N -0.711 5.711 21 C 0.518 3.482 22 O -0.607 6.607 23 C -0.131 4.131 24 C -0.087 4.087 25 C 0.110 3.890 26 C 0.126 3.874 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.407 0.593 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.157 -3.565 -17.317 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.215 4.215 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.244 1.244 6 H -0.187 1.187 7 C -0.387 4.387 8 H 0.033 0.967 9 N -0.335 5.335 10 C 0.013 3.987 11 C -0.202 4.202 12 C -0.008 4.008 13 N -0.318 5.318 14 C 0.299 3.701 15 O -0.477 6.477 16 C -0.120 4.120 17 H 0.129 0.871 18 C -0.169 4.169 19 C -0.014 4.014 20 N -0.362 5.362 21 C 0.305 3.695 22 O -0.490 6.490 23 C -0.171 4.171 24 C -0.125 4.125 25 C -0.016 4.016 26 C 0.000 4.000 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.244 0.756 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 13.881 -4.294 -16.732 22.160 hybrid contribution -0.470 0.452 1.055 1.240 sum 13.411 -3.842 -15.677 20.985 Atomic orbital electron populations 1.70027 1.07954 1.27441 1.54150 1.26105 0.95603 1.01260 0.98531 0.85705 0.78870 0.79388 0.77698 1.18865 1.24418 1.18718 1.18498 0.88508 0.92207 1.39465 0.96654 1.43952 1.06272 1.52607 1.30635 1.20863 0.98361 0.92913 0.86517 1.21653 0.99668 0.99405 0.99442 1.21288 1.00740 0.91251 0.87561 1.47601 1.53521 1.14104 1.16586 1.21225 0.77652 0.81307 0.89962 1.90651 1.60352 1.57041 1.39613 1.21043 0.98446 0.99094 0.93432 0.87100 1.21970 0.96841 1.04436 0.93672 1.22107 1.02984 0.79167 0.97142 1.45954 1.33341 1.11962 1.44917 1.20789 0.81016 0.87687 0.79987 1.90720 1.71192 1.18863 1.68186 1.21944 0.98262 1.01344 0.95592 1.20868 0.97718 0.97060 0.96884 1.21494 0.93922 0.99442 0.86710 1.22171 0.91196 0.92530 0.94076 0.92882 0.91056 0.95552 0.88806 0.94472 0.86497 0.87567 0.86727 0.91754 0.84660 0.88528 0.75609 0.88990 0.86127 0.92959 0.92646 0.87919 0.91183 0.93969 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.97 21.65 0.30 -58.72 16 2 C -0.02 -1.08 5.28 84.86 0.45 -0.63 16 3 Si 0.95 44.64 25.10 68.60 1.72 46.36 16 4 H -0.26 -11.13 6.69 99.48 0.67 -10.46 16 5 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.26 -14.55 9.55 84.03 0.80 -13.75 16 8 H 0.02 1.04 8.06 -2.91 -0.02 1.02 16 9 N -0.61 -27.19 2.10 -698.07 -1.47 -28.66 16 10 C 0.14 4.98 4.56 87.21 0.40 5.38 16 11 C -0.16 -4.45 5.63 29.04 0.16 -4.29 16 12 C 0.11 2.08 4.78 84.23 0.40 2.49 16 13 N -0.59 -16.02 2.44 -830.97 -2.03 -18.05 16 14 C 0.51 15.86 6.79 87.65 0.59 16.45 16 15 O -0.60 -24.59 15.56 -3.05 -0.05 -24.63 16 16 C -0.10 -2.15 1.29 -12.34 -0.02 -2.16 16 17 H 0.11 2.15 6.96 -2.39 -0.02 2.13 16 18 C -0.13 -1.61 4.47 30.20 0.14 -1.47 16 19 C 0.11 0.75 6.46 86.26 0.56 1.31 16 20 N -0.71 -9.93 5.27 -462.54 -2.44 -12.37 16 21 C 0.52 12.01 7.06 88.10 0.62 12.63 16 22 O -0.61 -20.10 17.92 -3.03 -0.05 -20.16 16 23 C -0.13 -2.80 5.57 30.10 0.17 -2.63 16 24 C -0.09 -2.28 4.24 30.22 0.13 -2.15 16 25 C 0.11 3.20 5.24 87.53 0.46 3.66 16 26 C 0.13 4.93 6.85 86.56 0.59 5.53 16 27 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 28 H 0.07 2.07 7.59 -2.39 -0.02 2.05 16 29 H 0.03 1.08 3.16 -2.39 -0.01 1.08 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.34 7.91 -2.38 -0.02 1.33 16 32 H 0.12 1.33 4.32 -2.39 -0.01 1.32 16 33 H 0.11 1.29 8.05 -2.39 -0.02 1.27 16 34 H 0.11 0.85 5.85 -2.39 -0.01 0.84 16 35 H 0.06 1.03 8.05 -2.39 -0.02 1.01 16 36 H 0.14 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.10 0.50 6.73 -2.39 -0.02 0.49 16 38 H 0.41 4.70 8.91 -92.71 -0.83 3.88 16 39 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.12 1.84 6.79 -2.38 -0.02 1.82 16 41 H 0.05 1.57 7.83 -2.38 -0.02 1.55 16 42 H 0.05 1.78 8.00 -2.39 -0.02 1.77 16 43 H 0.10 2.22 7.73 -2.39 -0.02 2.20 16 44 H 0.07 2.13 7.42 -2.38 -0.02 2.11 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.02 0.99 7.97 -2.39 -0.02 0.97 16 Total: -1.00 -86.58 343.23 1.57 -85.01 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.13 Total: 10.87 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.45 Total: 20.35 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.63 Total: -117.80 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.10 Total: -44.79 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.72 Total: 46.36 kcal Total: -86.58 1.57 -85.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981692719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.008 kcal (2) G-P(sol) polarization free energy of solvation -86.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds