Wall clock time and date at job start Fri Apr 10 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47272 * 2 1 4 4 C 1.47845 * 110.99793 * 54.98322 * 3 2 1 5 5 C 1.54907 * 104.79513 * 146.36359 * 4 3 2 6 6 C 1.55146 * 101.65186 * 322.92701 * 5 4 3 7 7 C 1.47447 * 110.99965 * 175.82460 * 3 2 1 8 8 H 1.09004 * 109.88906 * 117.17348 * 7 3 2 9 9 C 1.53001 * 109.88756 * 356.14950 * 7 3 2 10 10 N 1.46498 * 109.47176 * 175.60045 * 9 7 3 11 11 C 1.46767 * 124.35075 * 85.80995 * 10 9 7 12 12 C 1.54478 * 105.55371 * 163.02583 * 11 10 9 13 13 H 1.08999 * 110.96897 * 267.25532 * 12 11 10 14 14 C 1.50700 * 110.96919 * 143.52795 * 12 11 10 15 15 O 1.21284 * 120.00015 * 359.97438 * 14 12 11 16 16 N 1.34772 * 119.99667 * 180.02562 * 14 12 11 17 17 C 1.37094 * 120.00102 * 180.02562 * 16 14 12 18 18 H 1.08005 * 120.00090 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00389 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99822 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00015 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47533 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47207 * 119.99924 * 21 19 17 24 24 H 1.48501 * 109.47320 * 239.99853 * 21 19 17 25 25 C 1.54635 * 101.76124 * 25.37325 * 12 11 10 26 26 C 1.34560 * 124.43869 * 265.73707 * 10 9 7 27 27 O 1.21287 * 124.91362 * 0.40749 * 26 10 9 28 28 H 1.09006 * 109.47380 * 59.99497 * 1 2 3 29 29 H 1.08994 * 109.47412 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46987 * 299.99932 * 1 2 3 31 31 H 1.09000 * 109.47048 * 240.00328 * 2 1 3 32 32 H 1.08992 * 109.47371 * 120.00532 * 2 1 3 33 33 H 1.08995 * 110.37167 * 265.19098 * 4 3 2 34 34 H 1.08998 * 110.37499 * 27.42193 * 4 3 2 35 35 H 1.08996 * 110.99234 * 81.01885 * 5 4 3 36 36 H 1.08996 * 110.99011 * 204.83836 * 5 4 3 37 37 H 1.08996 * 110.70450 * 277.27234 * 6 5 4 38 38 H 1.09004 * 110.70283 * 154.03789 * 6 5 4 39 39 H 1.08998 * 109.46926 * 55.60331 * 9 7 3 40 40 H 1.08998 * 109.47049 * 295.60040 * 9 7 3 41 41 H 1.09004 * 110.24281 * 43.98109 * 11 10 9 42 42 H 1.09000 * 110.24531 * 282.07519 * 11 10 9 43 43 H 0.97003 * 120.00493 * 0.02562 * 16 14 12 44 44 H 0.96999 * 119.99625 * 180.02562 * 20 19 17 45 45 H 1.08995 * 110.48443 * 93.87931 * 25 12 11 46 46 H 1.09001 * 110.48390 * 216.39297 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4495 2.1485 1.1304 5 6 2.5674 3.1384 1.5430 6 6 3.8407 2.2756 1.3395 7 6 3.4901 1.4255 0.1002 8 1 3.9105 1.8813 -0.7962 9 6 4.0395 0.0076 0.2694 10 7 5.5040 0.0473 0.2626 11 6 6.3310 0.3014 1.4481 12 6 7.7516 -0.1749 1.0720 13 1 7.9080 -1.2109 1.3726 14 6 8.7995 0.7233 1.6770 15 8 8.4666 1.6719 2.3556 16 7 10.1064 0.4732 1.4632 17 6 11.0597 1.2900 2.0140 18 1 10.7635 2.1343 2.6190 19 6 12.4073 1.0319 1.7940 20 7 12.7678 0.0044 1.0583 21 14 13.7062 2.1453 2.5439 22 1 13.0448 3.2230 3.3227 23 1 14.5809 1.3501 3.4426 24 1 14.5255 2.7486 1.4623 25 6 7.7308 -0.0428 -0.4685 26 6 6.2654 -0.1457 -0.8299 27 8 5.8384 -0.3688 -1.9430 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.5603 2.6919 0.8111 34 1 1.2084 1.4798 1.9568 35 1 2.5778 4.0102 0.8889 36 1 2.4600 3.4359 2.5860 37 1 4.0173 1.6389 2.2063 38 1 4.7065 2.9074 1.1411 39 1 3.6893 -0.6181 -0.5515 40 1 3.6917 -0.4063 1.2159 41 1 5.9555 -0.2672 2.2989 42 1 6.3395 1.3662 1.6810 43 1 10.3726 -0.2848 0.9195 44 1 13.7085 -0.1760 0.9050 45 1 8.1320 0.9235 -0.7739 46 1 8.2970 -0.8527 -0.9286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112888770.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:33 Heat of formation + Delta-G solvation = -64.604807 kcal Electronic energy + Delta-G solvation = -26357.087285 eV Core-core repulsion = 22667.428931 eV Total energy + Delta-G solvation = -3689.658355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71852 -39.43828 -38.13601 -35.96565 -34.08365 -33.57903 -33.08491 -31.31187 -29.78498 -28.70124 -27.39261 -25.90675 -24.79118 -23.46591 -22.42343 -21.19272 -20.14641 -19.15271 -18.80456 -17.98386 -17.12251 -16.64310 -16.19289 -15.84813 -15.35408 -15.11872 -14.83930 -14.42049 -14.11179 -14.01537 -13.88358 -13.66846 -13.40187 -13.02598 -12.83851 -12.66165 -12.50923 -12.32967 -12.14843 -11.75249 -11.62876 -11.45963 -11.33026 -11.24531 -11.19083 -11.11359 -11.01212 -10.82760 -10.79114 -10.41535 -10.30898 -9.71314 -9.63246 -8.87772 -8.54382 -8.25784 -8.09691 -6.52537 -3.93974 2.72977 2.97861 3.09398 3.21962 3.28361 3.69781 3.80634 4.07179 4.36127 4.49616 4.52612 4.65464 4.67376 4.82372 4.88072 4.94685 4.99131 5.10808 5.15202 5.22998 5.26836 5.28580 5.32692 5.45451 5.48288 5.59218 5.66516 5.69684 5.72720 5.78604 5.83513 5.85922 5.91942 5.97662 6.04776 6.16249 6.21429 6.30754 6.56580 6.79918 6.87408 7.18872 7.45604 7.93167 8.30117 8.46006 9.05201 9.40384 9.89367 10.64516 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.002974 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.134765 B = 9411.402119 C =10139.903714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.036 3.964 3 N -0.521 5.521 4 C 0.042 3.958 5 C -0.131 4.131 6 C -0.136 4.136 7 C 0.057 3.943 8 H 0.090 0.910 9 C 0.113 3.887 10 N -0.617 5.617 11 C 0.118 3.882 12 C -0.112 4.112 13 H 0.101 0.899 14 C 0.447 3.553 15 O -0.592 6.592 16 N -0.551 5.551 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.930 3.070 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.143 4.143 26 C 0.522 3.478 27 O -0.538 6.538 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.394 0.606 44 H 0.273 0.727 45 H 0.110 0.890 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.249 -1.289 0.235 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 N -0.246 5.246 4 C -0.086 4.086 5 C -0.169 4.169 6 C -0.174 4.174 7 C -0.052 4.052 8 H 0.108 0.892 9 C -0.010 4.010 10 N -0.351 5.351 11 C -0.004 4.004 12 C -0.135 4.135 13 H 0.119 0.881 14 C 0.232 3.768 15 O -0.478 6.478 16 N -0.186 5.186 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.536 5.536 21 Si 0.757 3.243 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.183 4.183 26 C 0.311 3.689 27 O -0.415 6.415 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.228 0.772 44 H 0.083 0.917 45 H 0.128 0.872 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.731 -0.638 -0.421 19.746 hybrid contribution 1.209 -0.427 0.846 1.536 sum -18.523 -1.065 0.425 18.558 Atomic orbital electron populations 1.21845 0.94906 1.01703 1.02417 1.22372 0.95941 0.89807 1.01110 1.63846 1.05288 1.12593 1.42832 1.23067 0.98103 0.95596 0.91810 1.22712 0.94293 0.98276 1.01577 1.22902 0.98613 0.98538 0.97387 1.22888 0.87438 0.95556 0.99342 0.89170 1.22016 0.78911 0.97254 1.02789 1.48309 1.05506 1.70918 1.10361 1.22049 0.88348 1.03324 0.86722 1.22094 0.94989 1.01412 0.94969 0.88098 1.19306 0.83321 0.87762 0.86436 1.90522 1.80911 1.32375 1.44012 1.41857 1.03991 1.27608 1.45107 1.19779 0.85356 1.09317 1.28850 0.87681 1.25305 0.98320 0.97178 0.96940 1.69615 1.18208 1.27718 1.38065 0.85789 0.80037 0.79741 0.78728 1.19144 1.20659 1.20637 1.22344 0.94194 1.06090 0.95719 1.21006 0.89306 0.74822 0.83808 1.90694 1.78897 1.49655 1.22259 0.91851 0.92260 0.92703 0.90209 0.94341 0.90315 0.93573 0.90657 0.90754 0.91164 0.90170 0.89236 0.90648 0.90703 0.88681 0.77215 0.91693 0.87226 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.71 37.15 0.36 -0.78 16 2 C 0.04 0.32 4.45 -3.83 -0.02 0.31 16 3 N -0.52 -5.49 5.27 -223.35 -1.18 -6.67 16 4 C 0.04 0.38 5.34 -2.30 -0.01 0.36 16 5 C -0.13 -1.22 7.08 -24.59 -0.17 -1.39 16 6 C -0.14 -1.50 5.09 -24.91 -0.13 -1.63 16 7 C 0.06 0.67 3.68 -66.72 -0.25 0.42 16 8 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 9 C 0.11 1.33 4.05 -4.04 -0.02 1.32 16 10 N -0.62 -8.52 2.85 -172.37 -0.49 -9.01 16 11 C 0.12 1.69 5.76 -3.12 -0.02 1.67 16 12 C -0.11 -1.79 3.54 -90.14 -0.32 -2.11 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 C 0.45 9.59 7.01 -10.99 -0.08 9.51 16 15 O -0.59 -14.62 15.08 5.55 0.08 -14.54 16 16 N -0.55 -13.02 5.29 -10.96 -0.06 -13.08 16 17 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 18 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 19 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -23.40 13.05 55.50 0.72 -22.68 16 21 Si 0.93 20.23 29.55 -169.99 -5.02 15.21 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.14 -2.21 6.41 -26.74 -0.17 -2.38 16 26 C 0.52 8.44 8.03 -10.80 -0.09 8.35 16 27 O -0.54 -10.26 17.55 5.55 0.10 -10.16 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 6.79 -51.92 -0.35 0.04 16 31 H 0.08 0.77 6.89 -51.93 -0.36 0.42 16 32 H 0.04 0.33 6.36 -51.93 -0.33 0.00 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.39 7.37 -51.93 -0.38 0.00 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 7.41 -51.93 -0.38 0.38 16 38 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 39 H 0.09 1.11 6.12 -51.93 -0.32 0.79 16 40 H 0.08 0.76 6.83 -51.93 -0.35 0.41 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.52 6.07 -51.93 -0.32 1.21 16 43 H 0.39 8.95 7.90 -40.82 -0.32 8.63 16 44 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.11 1.81 7.89 -51.93 -0.41 1.40 16 46 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.31 361.61 -8.80 -39.10 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.26 Total: 10.34 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.14 Total: 6.04 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -1.00 Total: -51.44 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.18 Total: -24.70 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.31 -8.80 -39.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112888770.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.502 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds