Wall clock time and date at job start Fri Apr 10 2020 18:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.55589 * 2 1 4 4 C 1.52882 * 109.58417 * 240.00394 * 2 1 3 5 5 N 1.47146 * 108.61009 * 187.92821 * 4 2 1 6 6 C 1.34777 * 120.98271 * 230.50416 * 5 4 2 7 7 O 1.21275 * 120.00220 * 179.71265 * 6 5 4 8 8 C 1.50698 * 119.99748 * 359.71807 * 6 5 4 9 9 N 1.46899 * 109.47226 * 180.02562 * 8 6 5 10 10 C 1.46896 * 111.00221 * 189.99836 * 9 8 6 11 11 C 1.50700 * 109.47399 * 164.60985 * 10 9 8 12 12 H 1.08006 * 119.99835 * 1.03904 * 11 10 9 13 13 C 1.37872 * 120.00217 * 181.03987 * 11 10 9 14 14 N 1.31517 * 120.00079 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00037 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46978 * 89.99701 * 15 13 11 17 17 H 1.48501 * 109.47249 * 210.00008 * 15 13 11 18 18 H 1.48498 * 109.47042 * 329.99622 * 15 13 11 19 19 C 1.46907 * 111.00045 * 66.04099 * 9 8 6 20 20 C 1.52995 * 109.46884 * 60.53584 * 19 9 8 21 21 C 1.47207 * 109.46997 * 178.20122 * 20 19 9 22 22 N 8.56661 * 119.47521 * 238.91129 * 2 1 3 23 23 C 1.47150 * 118.03790 * 50.22338 * 5 4 2 24 24 C 1.53300 * 108.38890 * 309.72298 * 23 5 4 25 25 H 1.08997 * 109.50634 * 292.32834 * 24 23 5 26 26 C 1.52995 * 109.51717 * 172.22220 * 24 23 5 27 27 O 1.42961 * 109.21929 * 52.29505 * 24 23 5 28 28 H 1.08996 * 109.46908 * 299.87062 * 1 2 3 29 29 H 1.08995 * 109.46642 * 59.87402 * 1 2 3 30 30 H 1.09001 * 109.46940 * 179.87358 * 1 2 3 31 31 H 1.09004 * 109.61567 * 68.10511 * 4 2 1 32 32 H 1.09004 * 109.52143 * 307.69027 * 4 2 1 33 33 H 1.08998 * 109.47640 * 59.99804 * 8 6 5 34 34 H 1.09005 * 109.47148 * 299.99331 * 8 6 5 35 35 H 1.09005 * 109.46949 * 284.60528 * 10 9 8 36 36 H 1.08994 * 109.47220 * 44.60324 * 10 9 8 37 37 H 0.97005 * 119.99546 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.47138 * 180.53754 * 19 9 8 39 39 H 1.08996 * 109.46849 * 300.53772 * 19 9 8 40 40 H 1.08996 * 109.47407 * 298.20167 * 20 19 9 41 41 H 1.09001 * 109.47322 * 58.20627 * 20 19 9 42 42 H 1.09003 * 109.68090 * 69.44119 * 23 5 4 43 43 H 1.08994 * 109.68595 * 189.95895 * 23 5 4 44 44 H 1.09003 * 109.46832 * 59.99584 * 26 24 23 45 45 H 1.08997 * 109.47534 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47196 * 300.00472 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0425 -0.7201 -1.2475 5 7 3.5012 -0.8764 -1.1335 6 6 4.3195 -0.5036 -2.1375 7 8 5.5195 -0.6356 -2.0225 8 6 3.7431 0.0773 -3.4029 9 7 4.8325 0.3996 -4.3342 10 6 4.3362 1.1811 -5.4748 11 6 5.4996 1.8096 -6.1975 12 1 6.5083 1.6313 -5.8548 13 6 5.2766 2.6122 -7.2961 14 7 6.2920 3.1611 -7.9265 15 14 3.5321 2.9212 -7.8884 16 1 2.9845 4.1231 -7.2096 17 1 3.5397 3.1422 -9.3568 18 1 2.6853 1.7437 -7.5695 19 6 5.5148 -0.8195 -4.7884 20 6 4.5156 -1.7232 -5.5134 21 6 5.2086 -2.9248 -6.0061 22 7 5.7452 -3.8510 -6.3866 23 6 4.0406 -1.4459 0.1115 24 6 3.4312 -0.6856 1.2950 25 1 3.8037 0.3388 1.3001 26 6 3.8211 -1.3778 2.6025 27 8 2.0075 -0.6764 1.1655 28 1 -0.3633 0.5118 0.8911 29 1 -0.3632 0.5158 -0.8888 30 1 -0.3633 -1.0277 -0.0023 31 1 1.8044 -0.1315 -2.1335 32 1 1.5728 -1.7010 -1.3206 33 1 3.1869 0.9843 -3.1660 34 1 3.0741 -0.6491 -3.8644 35 1 3.7961 0.5249 -6.1573 36 1 3.6664 1.9625 -5.1159 37 1 6.1349 3.7261 -8.6993 38 1 6.3228 -0.5515 -5.4692 39 1 5.9250 -1.3482 -3.9280 40 1 3.7246 -2.0171 -4.8235 41 1 4.0816 -1.1833 -6.3550 42 1 3.7756 -2.5012 0.1775 43 1 5.1252 -1.3384 0.1247 44 1 4.9068 -1.3884 2.6982 45 1 3.3878 -0.8364 3.4435 46 1 3.4469 -2.4015 2.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122032393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:38 Heat of formation + Delta-G solvation = -59.499598 kcal Electronic energy + Delta-G solvation = -26465.519947 eV Core-core repulsion = 22776.082970 eV Total energy + Delta-G solvation = -3689.436976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53111 -39.95067 -38.56830 -37.30226 -35.79178 -34.82043 -34.57614 -32.11800 -31.31415 -30.54471 -28.35135 -27.45583 -26.22137 -24.97023 -22.93662 -22.30958 -21.59825 -20.09057 -19.12661 -18.55744 -18.20142 -17.77281 -17.04609 -16.96581 -16.33955 -16.28417 -16.17021 -15.57366 -15.41698 -15.13998 -14.96597 -14.59854 -14.49782 -14.31432 -13.83094 -13.69263 -13.47264 -13.28066 -13.16498 -13.08945 -13.02269 -12.95053 -12.80636 -12.60278 -12.53324 -12.42894 -12.29022 -11.96085 -11.86917 -11.65421 -11.53303 -11.43419 -11.07964 -10.67308 -10.59623 -9.52893 -8.92686 -8.16850 -6.21055 1.45784 1.48646 1.58072 1.64759 1.70127 1.75299 1.83956 2.45267 2.67295 2.90955 3.18299 3.33966 3.57238 3.68240 3.93022 4.02458 4.07781 4.09472 4.13033 4.15027 4.33456 4.39645 4.42384 4.45861 4.51155 4.59153 4.71292 4.73691 4.77692 4.84206 4.98051 5.04161 5.06600 5.11875 5.12509 5.23641 5.29738 5.39061 5.44556 5.63460 5.99958 6.23182 6.24178 6.37668 6.55544 6.70953 6.87949 7.23978 7.42168 9.00620 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.003888 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.835126 B = 7199.034197 C = 8143.802834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 H 0.057 0.943 4 C 0.073 3.927 5 N -0.620 5.620 6 C 0.516 3.484 7 O -0.561 6.561 8 C 0.027 3.973 9 N -0.527 5.527 10 C 0.166 3.834 11 C -0.513 4.513 12 H 0.026 0.974 13 C 0.000 4.000 14 N -0.958 5.958 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.296 1.296 18 H -0.223 1.223 19 C 0.072 3.928 20 C -0.062 4.062 21 C 0.242 3.758 22 N -0.495 5.495 23 C 0.083 3.917 24 C 0.078 3.922 25 H 0.052 0.948 26 C -0.139 4.139 27 O -0.386 6.386 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.024 0.976 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.138 0.862 41 H 0.124 0.876 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 -7.969 18.838 27.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.075 0.925 4 C -0.049 4.049 5 N -0.355 5.355 6 C 0.305 3.695 7 O -0.439 6.439 8 C -0.103 4.103 9 N -0.249 5.249 10 C 0.040 3.960 11 C -0.552 4.552 12 H 0.044 0.956 13 C -0.196 4.196 14 N -0.599 5.599 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.223 1.223 18 H -0.146 1.146 19 C -0.058 4.058 20 C -0.103 4.103 21 C -0.075 4.075 22 N -0.173 5.173 23 C -0.040 4.040 24 C 0.020 3.980 25 H 0.070 0.930 26 C -0.196 4.196 27 O -0.306 6.306 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.041 0.959 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.156 0.844 41 H 0.142 0.858 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.921 -9.102 18.578 26.727 hybrid contribution -0.168 0.603 -1.056 1.227 sum -17.089 -8.500 17.523 25.910 Atomic orbital electron populations 1.21741 0.90221 1.03756 1.03862 1.22568 0.96949 0.95033 0.84503 0.92469 1.22703 0.78343 1.03370 1.00500 1.48277 1.07883 1.63237 1.16061 1.21056 0.86304 0.76823 0.85340 1.90669 1.16782 1.55260 1.81192 1.22260 0.94030 1.03086 0.90906 1.61671 1.27568 1.18710 1.16962 1.20149 0.94588 0.93245 0.88034 1.21291 0.93823 1.28698 1.11369 0.95610 1.25963 1.01953 0.95169 0.96485 1.70105 1.33696 1.34355 1.21767 0.85712 0.79575 0.80725 0.76901 1.19203 1.22264 1.14572 1.21998 0.96188 0.88890 0.98711 1.20242 0.99248 0.87525 1.03318 1.29407 0.92595 0.93767 0.91765 1.81168 1.10815 1.14011 1.11323 1.22318 1.00114 0.98201 0.83359 1.22443 0.81282 0.98744 0.95547 0.93025 1.21717 1.02284 1.01283 0.94350 1.87953 1.20820 1.77646 1.44153 0.91737 0.88619 0.91156 0.86382 0.88877 0.85955 0.88146 0.95889 0.93792 0.92815 0.92735 0.90084 0.84430 0.85825 0.89956 0.89932 0.89964 0.91050 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.57 71.98 0.69 -0.47 16 2 C 0.07 0.90 3.39 30.56 0.10 1.00 16 3 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 4 C 0.07 0.91 5.81 86.22 0.50 1.41 16 5 N -0.62 -12.41 3.03 -818.16 -2.48 -14.89 16 6 C 0.52 13.84 7.43 87.66 0.65 14.49 16 7 O -0.56 -20.57 13.78 -3.01 -0.04 -20.61 16 8 C 0.03 0.65 3.58 85.56 0.31 0.96 16 9 N -0.53 -18.61 4.40 -905.38 -3.98 -22.59 16 10 C 0.17 6.49 3.67 85.56 0.31 6.81 16 11 C -0.51 -27.59 9.11 25.60 0.23 -27.36 16 12 H 0.03 1.63 7.70 -2.91 -0.02 1.61 16 13 C 0.00 0.02 5.47 84.65 0.46 0.48 16 14 N -0.96 -58.94 13.96 21.45 0.30 -58.65 16 15 Si 0.95 39.40 27.45 68.60 1.88 41.28 16 16 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 17 H -0.30 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.22 -7.66 6.57 99.48 0.65 -7.01 16 19 C 0.07 2.51 4.81 86.30 0.42 2.93 16 20 C -0.06 -1.59 5.05 28.79 0.15 -1.44 16 21 C 0.24 7.51 15.43 89.44 1.38 8.89 16 22 N -0.49 -17.95 18.54 20.01 0.37 -17.58 16 23 C 0.08 1.62 5.93 86.36 0.51 2.13 16 24 C 0.08 1.34 3.40 30.69 0.10 1.44 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 C -0.14 -1.78 9.57 71.98 0.69 -1.09 16 27 O -0.39 -6.65 10.03 -148.98 -1.49 -8.15 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 0.98 6.05 -2.39 -0.01 0.96 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.12 2.43 7.37 -2.39 -0.02 2.41 16 34 H 0.10 1.59 5.93 -2.38 -0.01 1.57 16 35 H 0.02 0.81 5.02 -2.38 -0.01 0.80 16 36 H 0.04 1.60 7.19 -2.39 -0.02 1.58 16 37 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.05 2.33 7.15 -2.39 -0.02 2.32 16 39 H 0.08 2.94 5.87 -2.39 -0.01 2.92 16 40 H 0.14 2.39 6.38 -2.39 -0.02 2.37 16 41 H 0.12 3.12 6.18 -2.39 -0.01 3.10 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.95 7.08 -2.39 -0.02 1.93 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -77.76 365.82 1.99 -75.77 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.93 Total: 15.23 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.51 Total: 10.18 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.79 Total: -113.70 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.54 Total: -28.76 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.88 Total: 41.28 kcal Total: -77.76 1.99 -75.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122032393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.269 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds