Wall clock time and date at job start Fri Apr 10 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.51410 * 2 1 4 4 C 1.53296 * 109.51648 * 120.10243 * 2 1 3 5 5 N 1.47155 * 108.38414 * 67.61962 * 4 2 1 6 6 C 1.34770 * 120.98627 * 230.51262 * 5 4 2 7 7 O 1.21284 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00313 * 179.97438 * 6 5 4 9 9 N 1.46905 * 109.47267 * 174.19659 * 8 6 5 10 10 C 1.46897 * 110.99705 * 164.07002 * 9 8 6 11 11 C 1.50704 * 109.46687 * 190.00118 * 10 9 8 12 12 H 1.08000 * 120.00515 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99879 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00088 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47091 * 59.99648 * 15 13 11 17 17 H 1.48502 * 109.46875 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46903 * 299.99691 * 15 13 11 19 19 C 1.46899 * 111.00032 * 288.02883 * 9 8 6 20 20 C 1.52996 * 109.46812 * 294.50838 * 19 9 8 21 21 C 1.47201 * 109.47077 * 178.61272 * 20 19 9 22 22 N 8.70870 * 107.51029 * 137.35603 * 2 1 3 23 23 C 1.47161 * 118.03263 * 50.78880 * 5 4 2 24 24 C 1.53713 * 108.16234 * 309.15675 * 23 5 4 25 25 H 1.08999 * 109.69833 * 292.54704 * 24 23 5 26 26 C 1.53000 * 109.44056 * 172.37127 * 24 23 5 27 27 O 1.42965 * 109.14513 * 52.53869 * 24 23 5 28 28 H 1.09001 * 109.47271 * 299.89283 * 1 2 3 29 29 H 1.09004 * 109.47279 * 59.90220 * 1 2 3 30 30 H 1.09007 * 109.47129 * 179.89805 * 1 2 3 31 31 H 1.08994 * 109.68137 * 307.90472 * 4 2 1 32 32 H 1.08996 * 109.71857 * 187.36266 * 4 2 1 33 33 H 1.09000 * 109.46645 * 54.20054 * 8 6 5 34 34 H 1.08998 * 109.47293 * 294.19599 * 8 6 5 35 35 H 1.08998 * 109.47734 * 310.00333 * 10 9 8 36 36 H 1.09001 * 109.47056 * 70.00786 * 10 9 8 37 37 H 0.96999 * 119.99947 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47073 * 54.50761 * 19 9 8 39 39 H 1.08997 * 109.46902 * 174.51321 * 19 9 8 40 40 H 1.09005 * 109.47311 * 298.60973 * 20 19 9 41 41 H 1.09000 * 109.47409 * 58.61148 * 20 19 9 42 42 H 1.08999 * 109.67612 * 68.93865 * 23 5 4 43 43 H 1.09001 * 109.67734 * 189.48734 * 23 5 4 44 44 H 1.08995 * 109.47498 * 300.39183 * 26 24 23 45 45 H 1.09003 * 109.46549 * 60.39378 * 26 24 23 46 46 H 1.08997 * 109.46791 * 180.38720 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2500 5 7 1.6960 -2.1503 1.1345 6 6 1.0717 -2.7963 2.1391 7 8 0.7864 -2.2023 3.1573 8 6 0.7272 -4.2565 1.9969 9 7 0.1842 -4.7575 3.2667 10 6 -0.5050 -6.0404 3.0748 11 6 -1.2539 -6.4011 4.3318 12 1 -1.2215 -5.7430 5.1875 13 6 -1.9806 -7.5715 4.3895 14 7 -2.0206 -8.3728 3.3474 15 14 -2.9095 -8.0184 5.9474 16 1 -3.9077 -6.9610 6.2490 17 1 -3.6062 -9.3154 5.7534 18 1 -1.9535 -8.1336 7.0778 19 6 1.2401 -4.8736 4.2814 20 6 2.2437 -5.9458 3.8526 21 6 3.3195 -6.0390 4.8529 22 7 4.1502 -6.1091 5.6263 23 6 2.0572 -2.8512 -0.1080 24 6 1.5396 -2.0216 -1.2940 25 1 0.4496 -2.0289 -1.2996 26 6 2.0614 -2.6213 -2.6013 27 8 2.0075 -0.6768 -1.1652 28 1 -0.3634 0.5122 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0277 -0.0018 31 1 1.5705 -0.3033 2.1377 32 1 3.1241 -0.6143 1.3217 33 1 1.6250 -4.8181 1.7389 34 1 -0.0170 -4.3792 1.2100 35 1 -1.2071 -5.9553 2.2453 36 1 0.2273 -6.8166 2.8528 37 1 -2.5315 -9.1963 3.3881 38 1 1.7521 -3.9169 4.3840 39 1 0.7964 -5.1526 5.2371 40 1 1.7365 -6.9075 3.7739 41 1 2.6692 -5.6792 2.8851 42 1 3.1408 -2.9511 -0.1713 43 1 1.5957 -3.8386 -0.1199 44 1 3.1514 -2.6154 -2.5942 45 1 1.7043 -3.6465 -2.6987 46 1 1.7003 -2.0293 -3.4422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122032563.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:42 Heat of formation + Delta-G solvation = -38.809073 kcal Electronic energy + Delta-G solvation = -26644.899148 eV Core-core repulsion = 22956.359380 eV Total energy + Delta-G solvation = -3688.539768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.63076 -38.85031 -37.24727 -35.82330 -34.73532 -33.75183 -32.67790 -30.78945 -30.37626 -28.66085 -27.16830 -26.32411 -25.23088 -23.67568 -22.86388 -20.86872 -20.00028 -18.89091 -17.64853 -17.03333 -16.91773 -16.38213 -16.02530 -15.77137 -15.19609 -15.04171 -14.86752 -14.57604 -14.24381 -13.84398 -13.70561 -13.40197 -13.25791 -13.09327 -12.63561 -12.53204 -12.31805 -12.26136 -12.10122 -12.03584 -11.97017 -11.72184 -11.55521 -11.40925 -11.26999 -11.16434 -10.83123 -10.70380 -10.67551 -10.24548 -10.17098 -10.01587 -9.60178 -9.22327 -8.55459 -8.51052 -7.42906 -6.11700 -4.12666 2.82070 2.84847 3.07042 3.10170 3.31868 3.35709 3.39929 3.44738 4.26148 4.38113 4.40293 4.53668 4.61045 4.77219 4.82480 4.87240 4.99826 5.03930 5.11208 5.24913 5.27233 5.31279 5.40136 5.45375 5.49623 5.53893 5.62387 5.65920 5.66664 5.69481 5.73199 5.86645 5.87799 6.01158 6.22508 6.38782 6.63397 6.94451 7.03679 7.10780 7.35409 7.67728 7.82374 7.92967 8.00996 8.33553 8.42504 8.94930 9.52633 10.98738 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003748 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.337173 B = 7469.566581 C = 8184.963823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.076 3.924 3 H 0.111 0.889 4 C 0.084 3.916 5 N -0.624 5.624 6 C 0.517 3.483 7 O -0.512 6.512 8 C 0.031 3.969 9 N -0.508 5.508 10 C 0.188 3.812 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.059 3.941 14 N -0.898 5.898 15 Si 0.896 3.104 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.074 3.926 20 C -0.075 4.075 21 C 0.225 3.775 22 N -0.460 5.460 23 C 0.079 3.921 24 C 0.068 3.932 25 H 0.070 0.930 26 C -0.144 4.144 27 O -0.374 6.374 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.034 0.966 36 H 0.003 0.997 37 H 0.263 0.737 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 12.342 -13.283 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 H 0.129 0.871 4 C -0.039 4.039 5 N -0.362 5.362 6 C 0.305 3.695 7 O -0.385 6.385 8 C -0.101 4.101 9 N -0.231 5.231 10 C 0.063 3.937 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.093 4.093 22 N -0.138 5.138 23 C -0.044 4.044 24 C 0.010 3.990 25 H 0.088 0.912 26 C -0.202 4.202 27 O -0.293 6.293 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.337 12.793 -11.563 19.154 hybrid contribution -0.461 -1.071 0.235 1.189 sum 7.877 11.722 -11.328 18.104 Atomic orbital electron populations 1.22362 0.95661 1.03181 1.02751 1.22574 0.94292 0.96395 0.84996 0.87139 1.22217 1.00559 0.81582 0.99551 1.48214 1.60618 1.10402 1.16936 1.21012 0.76273 0.89832 0.82366 1.90683 1.51381 1.68153 1.28257 1.22076 1.00318 0.91298 0.96388 1.62076 1.24489 1.32182 1.04335 1.19921 0.92948 0.82324 0.98463 1.21080 1.29568 1.04941 0.99192 0.91651 1.24930 0.96554 0.96253 0.96498 1.69921 1.41903 1.12490 1.29428 0.86584 0.80131 0.77558 0.83350 1.20102 1.21389 1.20217 1.22082 0.89955 0.95415 0.98177 1.20265 0.91519 1.06244 0.93657 1.29279 0.93627 0.92329 0.94047 1.81183 1.11923 1.09918 1.10803 1.22555 1.01258 0.96829 0.83789 1.22584 0.98828 0.82676 0.94937 0.91223 1.21743 1.02230 1.00787 0.95430 1.87996 1.72375 1.25363 1.43572 0.91173 0.91866 0.91790 0.88076 0.91158 0.92471 0.88096 0.94840 0.97916 0.92785 0.91203 0.88815 0.85663 0.88753 0.90630 0.88510 0.91632 0.90551 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.81 37.16 0.33 -1.39 16 2 C 0.08 0.69 3.93 -26.58 -0.10 0.59 16 3 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.08 0.89 6.02 -3.53 -0.02 0.87 16 5 N -0.62 -7.26 2.53 -172.01 -0.44 -7.69 16 6 C 0.52 7.72 7.28 -10.99 -0.08 7.64 16 7 O -0.51 -9.61 14.62 5.55 0.08 -9.52 16 8 C 0.03 0.45 3.73 -4.97 -0.02 0.43 16 9 N -0.51 -9.62 4.29 -237.52 -1.02 -10.64 16 10 C 0.19 4.17 4.44 -4.98 -0.02 4.15 16 11 C -0.51 -13.07 8.54 -34.44 -0.29 -13.36 16 12 H 0.07 1.71 7.10 -52.49 -0.37 1.34 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -24.61 13.29 55.43 0.74 -23.87 16 15 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.07 1.30 4.79 -3.83 -0.02 1.28 16 20 C -0.08 -1.13 5.04 -29.52 -0.15 -1.27 16 21 C 0.22 3.71 15.44 -20.72 -0.32 3.39 16 22 N -0.46 -8.53 18.54 42.20 0.78 -7.75 16 23 C 0.08 0.71 5.81 -3.31 -0.02 0.69 16 24 C 0.07 0.59 3.03 -26.36 -0.08 0.51 16 25 H 0.07 0.63 6.25 -51.93 -0.32 0.31 16 26 C -0.14 -0.95 9.57 37.16 0.36 -0.59 16 27 O -0.37 -3.74 10.22 -35.23 -0.36 -4.10 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.70 6.11 -51.92 -0.32 0.38 16 31 H 0.10 1.20 7.08 -51.93 -0.37 0.83 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 5.55 -51.93 -0.29 0.41 16 34 H 0.10 1.40 7.60 -51.93 -0.39 1.00 16 35 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.00 0.07 5.99 -51.93 -0.31 -0.24 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.07 1.23 6.56 -51.93 -0.34 0.89 16 39 H 0.09 1.84 6.90 -51.93 -0.36 1.48 16 40 H 0.13 2.05 6.33 -51.93 -0.33 1.72 16 41 H 0.09 1.16 6.26 -51.93 -0.32 0.83 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.76 6.08 -51.93 -0.32 0.44 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -31.33 365.32 -7.24 -38.57 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.97 Total: -0.71 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.54 Total: 4.40 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.06 Total: -49.96 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.28 Total: -13.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.33 -7.24 -38.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122032563.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.241 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds