Wall clock time and date at job start Fri Apr 10 2020 18:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.51065 * 2 1 4 4 C 1.53294 * 109.51125 * 239.90598 * 2 1 3 5 5 N 1.47153 * 108.38638 * 187.76985 * 4 2 1 6 6 C 1.34774 * 120.98366 * 230.51462 * 5 4 2 7 7 O 1.21283 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.50708 * 119.99945 * 180.02562 * 6 5 4 9 9 N 1.46898 * 109.46799 * 179.97438 * 8 6 5 10 10 C 1.46905 * 110.99771 * 189.99416 * 9 8 6 11 11 C 1.50694 * 109.47080 * 168.43964 * 10 9 8 12 12 H 1.08008 * 120.00193 * 354.95895 * 11 10 9 13 13 C 1.37877 * 119.99988 * 174.96303 * 11 10 9 14 14 N 1.31514 * 120.00033 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00081 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46848 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47098 * 119.99837 * 15 13 11 18 18 H 1.48497 * 109.47321 * 240.00180 * 15 13 11 19 19 C 1.46905 * 110.99809 * 66.04712 * 9 8 6 20 20 C 1.52997 * 109.47102 * 61.45352 * 19 9 8 21 21 C 1.47204 * 109.46827 * 179.04507 * 20 19 9 22 22 N 7.30443 * 134.53564 * 331.16967 * 2 1 3 23 23 C 1.47149 * 118.03289 * 50.78299 * 5 4 2 24 24 C 1.53714 * 108.16711 * 309.15908 * 23 5 4 25 25 H 1.08997 * 109.48631 * 172.39735 * 24 23 5 26 26 C 1.52994 * 109.65673 * 292.57473 * 24 23 5 27 27 O 1.42952 * 109.51685 * 120.15718 * 2 1 3 28 28 H 1.09004 * 109.47149 * 180.09665 * 1 2 3 29 29 H 1.09002 * 109.47161 * 300.09376 * 1 2 3 30 30 H 1.08995 * 109.47636 * 60.09378 * 1 2 3 31 31 H 1.09004 * 109.68558 * 68.04818 * 4 2 1 32 32 H 1.08999 * 109.71231 * 307.51252 * 4 2 1 33 33 H 1.08998 * 109.47275 * 59.99518 * 8 6 5 34 34 H 1.08996 * 109.46608 * 299.99322 * 8 6 5 35 35 H 1.09001 * 109.47408 * 288.44472 * 10 9 8 36 36 H 1.09004 * 109.46508 * 48.44549 * 10 9 8 37 37 H 0.96999 * 119.99585 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.46899 * 181.45235 * 19 9 8 39 39 H 1.08998 * 109.47062 * 301.45144 * 19 9 8 40 40 H 1.09000 * 109.47263 * 299.04499 * 20 19 9 41 41 H 1.08997 * 109.47614 * 59.04836 * 20 19 9 42 42 H 1.09001 * 109.68547 * 68.94076 * 23 5 4 43 43 H 1.09003 * 109.68207 * 189.48746 * 23 5 4 44 44 H 1.09001 * 109.47389 * 179.73542 * 26 24 23 45 45 H 1.09002 * 109.47386 * 299.73890 * 26 24 23 46 46 H 1.09001 * 109.47320 * 59.73645 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2501 5 7 3.5011 -0.8755 -1.1342 6 6 4.3191 -0.5029 -2.1384 7 8 3.8552 -0.0356 -3.1569 8 6 5.8104 -0.6680 -1.9962 9 7 6.4743 -0.1925 -3.2172 10 6 7.8986 -0.5520 -3.2161 11 6 8.4795 -0.3075 -4.5849 12 1 7.8371 -0.0013 -5.3974 13 6 9.8311 -0.4746 -4.8001 14 7 10.6133 -0.8480 -3.8110 15 14 10.5511 -0.1722 -6.4971 16 1 9.4685 0.2342 -7.4289 17 1 11.5680 0.9071 -6.4182 18 1 11.1889 -1.4180 -6.9935 19 6 6.2972 1.2564 -3.3825 20 6 6.9335 1.9864 -2.1980 21 6 6.7761 3.4392 -2.3751 22 7 6.6529 4.5613 -2.5108 23 6 4.0402 -1.4509 0.1082 24 6 3.4313 -0.6860 1.2943 25 1 3.7092 -1.1789 2.2260 26 6 3.9530 0.7522 1.3017 27 8 2.0075 -0.6769 1.1650 28 1 -0.3634 -1.0277 0.0017 29 1 -0.3633 0.5153 0.8892 30 1 -0.3634 0.5123 -0.8908 31 1 1.8029 -0.1387 -2.1378 32 1 1.5758 -1.7071 -1.3224 33 1 6.0462 -1.7208 -1.8412 34 1 6.1603 -0.0877 -1.1424 35 1 8.4267 0.0577 -2.4830 36 1 8.0072 -1.6056 -2.9583 37 1 11.5642 -0.9652 -3.9624 38 1 6.7764 1.5778 -4.3073 39 1 5.2334 1.4900 -3.4244 40 1 6.4429 1.6776 -1.2749 41 1 7.9939 1.7395 -2.1461 42 1 3.7719 -2.5055 0.1711 43 1 5.1252 -1.3465 0.1205 44 1 3.5158 1.2930 2.1410 45 1 5.0385 0.7445 1.4002 46 1 3.6764 1.2438 0.3690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122032711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:45 Heat of formation + Delta-G solvation = -38.247342 kcal Electronic energy + Delta-G solvation = -26849.384306 eV Core-core repulsion = 23160.868896 eV Total energy + Delta-G solvation = -3688.515409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67759 -38.91141 -37.19620 -35.81355 -34.81743 -33.73671 -32.67914 -30.74418 -30.38890 -28.74203 -27.23503 -26.45926 -25.02424 -23.57173 -23.00892 -20.88128 -20.06756 -18.87594 -17.65267 -17.10958 -16.88731 -16.29460 -15.96780 -15.88194 -15.47839 -14.97298 -14.75499 -14.53825 -14.31683 -13.90729 -13.63321 -13.48361 -13.23986 -13.11315 -12.66842 -12.51627 -12.37908 -12.29737 -12.14753 -12.08515 -11.90146 -11.76213 -11.54295 -11.45398 -11.28149 -11.18327 -10.79519 -10.73551 -10.66050 -10.32416 -10.12299 -10.02073 -9.55053 -9.19437 -8.57328 -8.51240 -7.42413 -6.11618 -4.12323 2.79915 2.81001 3.07429 3.10288 3.28614 3.37107 3.41978 3.42920 4.27192 4.37998 4.38914 4.45235 4.69312 4.72076 4.79216 4.87105 4.93762 5.02283 5.06998 5.24479 5.25420 5.31821 5.33622 5.45205 5.47852 5.51838 5.59705 5.63228 5.67867 5.69919 5.72870 5.82572 5.87696 5.95146 6.24129 6.38487 6.69802 6.91804 7.04665 7.13823 7.33160 7.69890 7.82674 7.93438 8.01244 8.32458 8.40958 8.96701 9.53158 10.98812 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.003658 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.099651 B = 7653.053708 C = 8134.276207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.066 0.934 4 C 0.085 3.915 5 N -0.623 5.623 6 C 0.518 3.482 7 O -0.514 6.514 8 C 0.031 3.969 9 N -0.509 5.509 10 C 0.186 3.814 11 C -0.507 4.507 12 H 0.067 0.933 13 C 0.058 3.942 14 N -0.898 5.898 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.067 3.933 20 C -0.075 4.075 21 C 0.225 3.775 22 N -0.459 5.459 23 C 0.078 3.922 24 C 0.075 3.925 25 H 0.114 0.886 26 C -0.186 4.186 27 O -0.373 6.373 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.006 0.994 36 H 0.031 0.969 37 H 0.261 0.739 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 -1.993 13.174 20.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.038 4.038 5 N -0.360 5.360 6 C 0.307 3.693 7 O -0.388 6.388 8 C -0.100 4.100 9 N -0.232 5.232 10 C 0.062 3.938 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.143 4.143 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.092 4.092 22 N -0.137 5.137 23 C -0.046 4.046 24 C 0.016 3.984 25 H 0.131 0.869 26 C -0.244 4.244 27 O -0.292 6.292 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.845 -0.440 12.133 19.962 hybrid contribution 1.285 0.019 -0.140 1.293 sum -14.560 -0.421 11.993 18.868 Atomic orbital electron populations 1.21721 0.92407 1.03152 1.02773 1.22491 0.95306 0.95935 0.85120 0.91567 1.22241 0.80516 1.01648 0.99379 1.48195 1.06421 1.64529 1.16864 1.20993 0.89327 0.76803 0.82202 1.90658 1.77085 1.43112 1.27965 1.22077 0.90336 1.02796 0.94825 1.62133 1.17375 1.11726 1.31937 1.19924 0.79657 0.96361 0.97859 1.21160 0.92366 1.45664 0.95385 0.91515 1.24942 0.97055 0.95271 0.97079 1.69940 1.05017 1.47571 1.31246 0.86476 0.79107 0.77790 0.84337 1.19534 1.21125 1.21011 1.22232 1.00838 0.86809 0.96474 1.20257 1.06295 0.82094 1.03011 1.29237 0.92339 0.95071 0.92601 1.81176 1.09998 1.13043 1.09516 1.22543 1.00118 0.98014 0.83894 1.22655 0.81229 0.96078 0.98397 0.86870 1.22406 1.02190 0.96860 1.02916 1.87999 1.20587 1.77167 1.43485 0.91595 0.91578 0.90763 0.88213 0.91035 0.88098 0.92457 0.97604 0.95138 0.92909 0.88895 0.89965 0.88991 0.86020 0.90406 0.88375 0.91645 0.91030 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.57 37.15 0.36 -0.69 16 2 C 0.07 0.65 3.01 -26.58 -0.08 0.57 16 3 H 0.07 0.65 6.26 -51.93 -0.32 0.33 16 4 C 0.09 0.90 5.92 -3.53 -0.02 0.88 16 5 N -0.62 -7.14 2.53 -172.01 -0.43 -7.57 16 6 C 0.52 7.63 7.43 -10.98 -0.08 7.55 16 7 O -0.51 -9.47 13.79 5.56 0.08 -9.39 16 8 C 0.03 0.45 3.60 -4.97 -0.02 0.44 16 9 N -0.51 -9.66 4.43 -237.51 -1.05 -10.72 16 10 C 0.19 4.17 4.54 -4.98 -0.02 4.15 16 11 C -0.51 -13.12 8.40 -34.44 -0.29 -13.40 16 12 H 0.07 1.77 7.42 -52.48 -0.39 1.38 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -24.72 13.29 55.43 0.74 -23.99 16 15 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.07 1.19 4.78 -3.82 -0.02 1.17 16 20 C -0.07 -1.13 5.05 -29.52 -0.15 -1.28 16 21 C 0.22 3.75 15.44 -20.73 -0.32 3.43 16 22 N -0.46 -8.55 18.54 42.19 0.78 -7.77 16 23 C 0.08 0.67 5.96 -3.32 -0.02 0.65 16 24 C 0.07 0.60 3.93 -26.36 -0.10 0.50 16 25 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.19 -1.52 8.82 37.15 0.33 -1.19 16 27 O -0.37 -3.65 10.22 -35.23 -0.36 -4.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 1.18 7.08 -51.93 -0.37 0.81 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.39 7.77 -51.93 -0.40 0.99 16 34 H 0.06 0.70 5.59 -51.93 -0.29 0.41 16 35 H 0.01 0.14 6.00 -51.93 -0.31 -0.17 16 36 H 0.03 0.73 7.90 -51.93 -0.41 0.32 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.09 1.86 7.01 -51.93 -0.36 1.50 16 39 H 0.08 1.49 5.86 -51.93 -0.30 1.18 16 40 H 0.09 1.13 6.36 -51.93 -0.33 0.80 16 41 H 0.12 1.99 6.26 -51.93 -0.32 1.66 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.74 6.05 -51.93 -0.31 0.42 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.62 6.11 -51.93 -0.32 0.30 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -31.42 364.65 -7.28 -38.70 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.97 Total: -0.86 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.54 Total: 4.21 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.03 Total: -50.05 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.28 Total: -13.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.42 -7.28 -38.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122032711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.455 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds