Wall clock time and date at job start Fri Apr 10 2020 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50521 * 2 1 4 4 O 1.43016 * 109.50679 * 120.08335 * 2 1 3 5 5 C 1.43014 * 113.73671 * 178.64813 * 4 2 1 6 6 C 1.53102 * 109.26215 * 301.33224 * 5 4 2 7 7 N 1.47019 * 109.25437 * 56.84715 * 6 5 4 8 8 C 1.46902 * 110.99635 * 177.60935 * 7 6 5 9 9 C 1.50702 * 109.47176 * 293.90951 * 8 7 6 10 10 O 1.21284 * 119.99955 * 353.91172 * 9 8 7 11 11 N 1.34776 * 119.99965 * 173.90784 * 9 8 7 12 12 C 1.46498 * 119.99704 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47322 * 90.00299 * 12 11 9 14 14 H 1.08002 * 119.99959 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46682 * 90.00488 * 17 15 13 19 19 H 1.48498 * 109.47465 * 210.00261 * 17 15 13 20 20 H 1.48501 * 109.47257 * 330.00999 * 17 15 13 21 21 C 1.46495 * 119.99972 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47119 * 89.99746 * 21 11 9 23 23 C 1.47206 * 109.47239 * 179.97438 * 22 21 11 24 24 N 8.48771 * 107.13563 * 245.98587 * 2 1 3 25 25 C 1.47014 * 110.75628 * 301.38697 * 7 6 5 26 26 H 1.09008 * 109.50413 * 298.68480 * 25 7 6 27 27 C 1.52990 * 109.50653 * 178.55320 * 25 7 6 28 28 H 1.09003 * 109.47330 * 299.91724 * 1 2 3 29 29 H 1.09000 * 109.46918 * 59.91305 * 1 2 3 30 30 H 1.08999 * 109.47350 * 179.91499 * 1 2 3 31 31 H 1.09002 * 109.50658 * 181.39689 * 5 4 2 32 32 H 1.08996 * 109.50717 * 61.26783 * 5 4 2 33 33 H 1.08998 * 109.50195 * 296.92004 * 6 5 4 34 34 H 1.08998 * 109.50749 * 176.78535 * 6 5 4 35 35 H 1.09000 * 109.46805 * 53.90922 * 8 7 6 36 36 H 1.08996 * 109.47050 * 173.90617 * 8 7 6 37 37 H 1.09002 * 109.46541 * 210.00315 * 12 11 9 38 38 H 1.08997 * 109.47232 * 329.99413 * 12 11 9 39 39 H 0.96999 * 119.99911 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47285 * 209.99587 * 21 11 9 41 41 H 1.09000 * 109.47211 * 330.00080 * 21 11 9 42 42 H 1.09004 * 109.47208 * 299.99674 * 22 21 11 43 43 H 1.08996 * 109.47266 * 60.00180 * 22 21 11 44 44 H 1.08999 * 109.47613 * 59.99913 * 27 25 7 45 45 H 1.09002 * 109.47205 * 180.02562 * 27 25 7 46 46 H 1.09000 * 109.46845 * 299.99762 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 8 2.0075 -0.6757 1.1665 5 6 3.4334 -0.7554 1.2424 6 6 3.9649 -1.4868 0.0068 7 7 3.5102 -0.7873 -1.2037 8 6 4.0464 -1.4256 -2.4132 9 6 5.5440 -1.2609 -2.4463 10 8 6.0975 -0.5772 -1.6114 11 7 6.2683 -1.8734 -3.4038 12 6 7.7241 -1.7129 -3.4362 13 6 8.3676 -2.7964 -2.6099 14 1 7.7535 -3.5309 -2.1101 15 6 9.7402 -2.8499 -2.4919 16 7 10.4879 -1.9552 -3.1001 17 14 10.5378 -4.1927 -1.4670 18 1 10.8142 -5.3724 -2.3256 19 1 11.8116 -3.6878 -0.8945 20 1 9.6216 -4.5854 -0.3662 21 6 5.5997 -2.6989 -4.4126 22 6 5.2215 -1.8297 -5.6136 23 6 4.5501 -2.6592 -6.6276 24 7 4.0308 -3.3008 -7.4089 25 6 2.0421 -0.7237 -1.2482 26 1 1.6346 -1.7344 -1.2757 27 6 1.6015 0.0400 -2.4985 28 1 -0.3634 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8892 30 1 -0.3634 -1.0276 -0.0015 31 1 3.7201 -1.3024 2.1405 32 1 3.8527 0.2500 1.2785 33 1 3.5881 -2.5096 -0.0007 34 1 5.0545 -1.4998 0.0322 35 1 3.7976 -2.4868 -2.4047 36 1 3.6097 -0.9571 -3.2952 37 1 8.0746 -1.7846 -4.4659 38 1 7.9913 -0.7379 -3.0287 39 1 11.4536 -1.9927 -3.0167 40 1 6.2724 -3.4930 -4.7363 41 1 4.6988 -3.1380 -3.9839 42 1 4.5486 -1.0356 -5.2900 43 1 6.1222 -1.3906 -6.0424 44 1 1.9696 -0.4736 -3.3866 45 1 0.5130 0.0872 -2.5307 46 1 2.0079 1.0510 -2.4687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156320277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:54 Heat of formation + Delta-G solvation = -42.425820 kcal Electronic energy + Delta-G solvation = -26650.861804 eV Core-core repulsion = 22962.165202 eV Total energy + Delta-G solvation = -3688.696602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.22969 -38.94666 -36.89751 -35.83796 -35.17030 -33.69928 -32.90288 -30.86158 -29.60450 -29.08662 -27.55986 -26.17758 -24.05901 -23.57294 -22.53936 -22.04756 -20.09627 -18.55812 -17.65363 -16.97291 -16.54990 -16.40212 -15.98526 -15.57415 -15.40438 -14.99359 -14.73413 -14.43135 -14.39977 -14.03505 -13.61592 -13.47108 -13.17507 -12.95336 -12.86675 -12.63102 -12.45669 -12.29830 -12.24155 -11.90992 -11.82397 -11.75728 -11.50030 -11.29989 -11.12942 -11.04682 -11.00443 -10.81846 -10.64603 -10.45039 -10.20219 -9.72600 -9.62050 -8.97523 -8.49632 -8.26010 -7.85417 -6.11090 -4.15885 2.69322 2.77572 3.25767 3.27072 3.34019 3.37458 3.41930 3.70752 3.86007 4.23308 4.39718 4.53187 4.82174 4.89774 4.93134 5.00842 5.08221 5.17054 5.19999 5.23001 5.26363 5.27364 5.35103 5.37532 5.42037 5.49320 5.58674 5.64440 5.71950 5.76224 5.79708 5.90544 6.00393 6.04040 6.08415 6.13847 6.79303 6.96971 7.03209 7.19705 7.34839 7.41740 7.54161 7.84990 8.15066 8.24927 8.82631 8.99003 9.49887 10.96952 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004515 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.910152 B = 6199.901031 C = 8188.609620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.095 3.905 3 H 0.067 0.933 4 O -0.387 6.387 5 C 0.068 3.932 6 C 0.015 3.985 7 N -0.512 5.512 8 C 0.028 3.972 9 C 0.508 3.492 10 O -0.514 6.514 11 N -0.599 5.599 12 C 0.246 3.754 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.117 3.883 22 C -0.050 4.050 23 C 0.217 3.783 24 N -0.445 5.445 25 C 0.050 3.950 26 H 0.047 0.953 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.035 0.965 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.264 0.736 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.581 3.432 1.514 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 H 0.085 0.915 4 O -0.307 6.307 5 C -0.009 4.009 6 C -0.113 4.113 7 N -0.238 5.238 8 C -0.102 4.102 9 C 0.294 3.706 10 O -0.389 6.389 11 N -0.332 5.332 12 C 0.127 3.873 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.009 4.009 22 C -0.092 4.092 23 C -0.102 4.102 24 N -0.123 5.123 25 C -0.059 4.059 26 H 0.065 0.935 27 C -0.207 4.207 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.774 3.316 0.946 18.106 hybrid contribution 0.742 -1.371 0.443 1.620 sum -17.033 1.946 1.389 17.200 Atomic orbital electron populations 1.21821 0.93061 1.02814 1.02571 1.22127 0.94477 0.95695 0.83970 0.91480 1.87942 1.21714 1.78442 1.42554 1.22639 0.80109 1.00801 0.97339 1.22934 1.03530 0.95038 0.89769 1.61878 1.07326 1.53101 1.01469 1.22229 0.94788 0.98349 0.94883 1.20148 0.88056 0.80394 0.81990 1.90672 1.72227 1.38571 1.37397 1.48232 1.09925 1.47857 1.27142 1.19331 0.71785 0.98601 0.97540 1.21400 0.91530 1.12761 1.31072 0.92489 1.24905 0.97169 0.96137 0.95687 1.69915 1.05367 1.34674 1.43202 0.86534 0.78895 0.81717 0.80496 1.20668 1.21079 1.19923 1.21303 0.98639 0.93447 0.87558 1.19911 1.01026 0.96630 0.91626 1.29144 0.93200 0.93829 0.93977 1.81234 1.10341 1.09789 1.10903 1.22329 0.88029 0.98933 0.96602 0.93485 1.21950 1.01053 1.01366 0.96323 0.91699 0.90769 0.92011 0.88501 0.91956 0.94650 0.87326 0.92504 0.87894 0.94793 0.93514 0.92654 0.88746 0.90885 0.87650 0.86399 0.92126 0.91683 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.29 37.16 0.35 -0.86 16 2 C 0.10 1.05 2.91 -26.68 -0.08 0.97 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 4 O -0.39 -5.07 10.47 -35.23 -0.37 -5.44 16 5 C 0.07 0.88 7.01 37.21 0.26 1.14 16 6 C 0.02 0.22 5.30 -3.71 -0.02 0.20 16 7 N -0.51 -7.07 4.24 -227.77 -0.96 -8.04 16 8 C 0.03 0.38 3.95 -4.97 -0.02 0.36 16 9 C 0.51 9.14 7.25 -10.98 -0.08 9.06 16 10 O -0.51 -11.56 14.22 5.55 0.08 -11.48 16 11 N -0.60 -10.65 2.46 -175.07 -0.43 -11.08 16 12 C 0.25 5.71 5.16 -5.20 -0.03 5.69 16 13 C -0.53 -13.88 9.39 -34.44 -0.32 -14.20 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 17 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.12 1.52 5.19 -4.04 -0.02 1.49 16 22 C -0.05 -0.51 6.03 -29.51 -0.18 -0.69 16 23 C 0.22 2.54 15.44 -20.74 -0.32 2.22 16 24 N -0.45 -6.41 18.54 42.18 0.78 -5.63 16 25 C 0.05 0.55 2.08 -67.61 -0.14 0.41 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 27 C -0.15 -1.30 8.64 37.15 0.32 -0.98 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.48 6.54 -51.93 -0.34 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 1.90 6.07 -51.93 -0.32 1.59 16 35 H 0.06 0.70 7.05 -51.93 -0.37 0.33 16 36 H 0.10 1.10 5.04 -51.93 -0.26 0.84 16 37 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 38 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 41 H 0.07 0.80 6.27 -51.93 -0.33 0.47 16 42 H 0.11 0.85 7.41 -51.93 -0.38 0.46 16 43 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 45 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -32.42 371.21 -7.20 -39.62 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.23 Total: -1.48 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.38 Total: 6.44 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.12 Total: -49.23 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.29 Total: -16.93 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.42 -7.20 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.806 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds