Wall clock time and date at job start Fri Apr 10 2020 18:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50521 * 2 1 4 4 O 1.43016 * 109.50679 * 120.08335 * 2 1 3 5 5 C 1.43014 * 113.73671 * 178.64813 * 4 2 1 6 6 C 1.53102 * 109.26215 * 301.33224 * 5 4 2 7 7 N 1.47019 * 109.25437 * 56.84715 * 6 5 4 8 8 C 1.46902 * 110.99635 * 177.60935 * 7 6 5 9 9 C 1.50702 * 109.47176 * 293.90951 * 8 7 6 10 10 O 1.21284 * 119.99955 * 353.91172 * 9 8 7 11 11 N 1.34776 * 119.99965 * 173.90784 * 9 8 7 12 12 C 1.46498 * 119.99704 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47322 * 90.00299 * 12 11 9 14 14 H 1.08002 * 119.99959 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46682 * 90.00488 * 17 15 13 19 19 H 1.48498 * 109.47465 * 210.00261 * 17 15 13 20 20 H 1.48501 * 109.47257 * 330.00999 * 17 15 13 21 21 C 1.46495 * 119.99972 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47119 * 89.99746 * 21 11 9 23 23 C 1.47206 * 109.47239 * 179.97438 * 22 21 11 24 24 N 8.48771 * 107.13563 * 245.98587 * 2 1 3 25 25 C 1.47014 * 110.75628 * 301.38697 * 7 6 5 26 26 H 1.09008 * 109.50413 * 298.68480 * 25 7 6 27 27 C 1.52990 * 109.50653 * 178.55320 * 25 7 6 28 28 H 1.09003 * 109.47330 * 299.91724 * 1 2 3 29 29 H 1.09000 * 109.46918 * 59.91305 * 1 2 3 30 30 H 1.08999 * 109.47350 * 179.91499 * 1 2 3 31 31 H 1.09002 * 109.50658 * 181.39689 * 5 4 2 32 32 H 1.08996 * 109.50717 * 61.26783 * 5 4 2 33 33 H 1.08998 * 109.50195 * 296.92004 * 6 5 4 34 34 H 1.08998 * 109.50749 * 176.78535 * 6 5 4 35 35 H 1.09000 * 109.46805 * 53.90922 * 8 7 6 36 36 H 1.08996 * 109.47050 * 173.90617 * 8 7 6 37 37 H 1.09002 * 109.46541 * 210.00315 * 12 11 9 38 38 H 1.08997 * 109.47232 * 329.99413 * 12 11 9 39 39 H 0.96999 * 119.99911 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47285 * 209.99587 * 21 11 9 41 41 H 1.09000 * 109.47211 * 330.00080 * 21 11 9 42 42 H 1.09004 * 109.47208 * 299.99674 * 22 21 11 43 43 H 1.08996 * 109.47266 * 60.00180 * 22 21 11 44 44 H 1.08999 * 109.47613 * 59.99913 * 27 25 7 45 45 H 1.09002 * 109.47205 * 180.02562 * 27 25 7 46 46 H 1.09000 * 109.46845 * 299.99762 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 8 2.0075 -0.6757 1.1665 5 6 3.4334 -0.7554 1.2424 6 6 3.9649 -1.4868 0.0068 7 7 3.5102 -0.7873 -1.2037 8 6 4.0464 -1.4256 -2.4132 9 6 5.5440 -1.2609 -2.4463 10 8 6.0975 -0.5772 -1.6114 11 7 6.2683 -1.8734 -3.4038 12 6 7.7241 -1.7129 -3.4362 13 6 8.3676 -2.7964 -2.6099 14 1 7.7535 -3.5309 -2.1101 15 6 9.7402 -2.8499 -2.4919 16 7 10.4879 -1.9552 -3.1001 17 14 10.5378 -4.1927 -1.4670 18 1 10.8142 -5.3724 -2.3256 19 1 11.8116 -3.6878 -0.8945 20 1 9.6216 -4.5854 -0.3662 21 6 5.5997 -2.6989 -4.4126 22 6 5.2215 -1.8297 -5.6136 23 6 4.5501 -2.6592 -6.6276 24 7 4.0308 -3.3008 -7.4089 25 6 2.0421 -0.7237 -1.2482 26 1 1.6346 -1.7344 -1.2757 27 6 1.6015 0.0400 -2.4985 28 1 -0.3634 0.5126 0.8907 29 1 -0.3633 0.5152 -0.8892 30 1 -0.3634 -1.0276 -0.0015 31 1 3.7201 -1.3024 2.1405 32 1 3.8527 0.2500 1.2785 33 1 3.5881 -2.5096 -0.0007 34 1 5.0545 -1.4998 0.0322 35 1 3.7976 -2.4868 -2.4047 36 1 3.6097 -0.9571 -3.2952 37 1 8.0746 -1.7846 -4.4659 38 1 7.9913 -0.7379 -3.0287 39 1 11.4536 -1.9927 -3.0167 40 1 6.2724 -3.4930 -4.7363 41 1 4.6988 -3.1380 -3.9839 42 1 4.5486 -1.0356 -5.2900 43 1 6.1222 -1.3906 -6.0424 44 1 1.9696 -0.4736 -3.3866 45 1 0.5130 0.0872 -2.5307 46 1 2.0079 1.0510 -2.4687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156320277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:53 Heat of formation + Delta-G solvation = -64.562969 kcal Electronic energy + Delta-G solvation = -26651.821743 eV Core-core repulsion = 22962.165202 eV Total energy + Delta-G solvation = -3689.656540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34433 -40.19421 -37.98388 -36.94227 -36.49306 -34.85670 -34.57046 -32.15087 -30.82727 -29.85846 -29.04690 -27.38492 -25.31505 -24.89542 -23.62573 -23.26781 -21.02484 -19.90866 -18.81576 -18.33069 -18.13125 -17.53417 -17.14149 -16.77361 -16.59606 -16.21263 -15.94737 -15.65260 -15.61751 -15.24339 -14.69002 -14.61914 -14.35690 -14.11357 -13.89536 -13.64479 -13.57912 -13.52890 -13.35477 -13.17186 -12.96950 -12.73341 -12.66433 -12.58120 -12.50372 -12.42556 -12.17023 -12.07531 -11.93588 -11.78721 -11.65202 -11.40092 -10.67311 -10.57825 -10.34433 -9.43960 -9.30904 -8.17337 -6.29468 1.39101 1.41560 1.50489 1.69092 1.84371 1.91410 2.20490 2.42889 2.75024 2.88697 3.13047 3.17618 3.69557 3.76580 3.92676 4.00999 4.10975 4.14225 4.15752 4.21524 4.32736 4.37050 4.46542 4.52727 4.59336 4.65643 4.74174 4.83572 4.85079 4.90476 5.01080 5.05238 5.06247 5.08103 5.13069 5.30977 5.35969 5.41967 5.62465 5.84629 5.91713 6.03959 6.14384 6.24447 6.61109 6.77549 6.83904 7.36211 7.57710 8.89173 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004515 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.910152 B = 6199.901031 C = 8188.609620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.059 0.941 4 O -0.397 6.397 5 C 0.072 3.928 6 C 0.019 3.981 7 N -0.530 5.530 8 C 0.040 3.960 9 C 0.503 3.497 10 O -0.569 6.569 11 N -0.599 5.599 12 C 0.262 3.738 13 C -0.539 4.539 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.925 5.925 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.113 3.887 22 C -0.037 4.037 23 C 0.246 3.754 24 N -0.489 5.489 25 C 0.051 3.949 26 H 0.051 0.949 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.034 0.966 38 H 0.004 0.996 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.049 2.792 0.897 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.077 0.923 4 O -0.317 6.317 5 C -0.005 4.005 6 C -0.109 4.109 7 N -0.256 5.256 8 C -0.090 4.090 9 C 0.291 3.709 10 O -0.447 6.447 11 N -0.331 5.331 12 C 0.141 3.859 13 C -0.577 4.577 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.012 4.012 22 C -0.079 4.079 23 C -0.072 4.072 24 N -0.167 5.167 25 C -0.057 4.057 26 H 0.069 0.931 27 C -0.204 4.204 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.052 0.948 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.107 0.893 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.289 2.653 0.296 20.464 hybrid contribution 1.496 -1.129 0.658 1.986 sum -18.793 1.524 0.954 18.879 Atomic orbital electron populations 1.21825 0.90696 1.03275 1.03813 1.22383 0.96273 0.95065 0.83403 0.92315 1.87936 1.21227 1.78721 1.43790 1.22570 0.80417 1.00164 0.97299 1.22768 1.01327 0.95622 0.91157 1.61847 1.09358 1.53260 1.01121 1.22205 0.90772 0.99863 0.96168 1.21034 0.90095 0.79057 0.80706 1.90653 1.73709 1.40956 1.39379 1.48094 1.07999 1.48506 1.28491 1.18767 0.75268 0.95453 0.96419 1.21733 0.91883 1.13099 1.31018 0.93032 1.25690 0.97939 0.98203 0.96814 1.70019 1.05574 1.36295 1.44620 0.85595 0.77731 0.79499 0.79059 1.19307 1.21029 1.19943 1.21512 0.99058 0.93036 0.87572 1.19836 1.01783 0.96339 0.89898 1.29163 0.91984 0.92771 0.93236 1.81281 1.12072 1.11038 1.12277 1.22432 0.85883 0.99517 0.97819 0.93135 1.21976 1.02641 1.00610 0.95217 0.91591 0.88464 0.91864 0.87294 0.93087 0.94314 0.90954 0.90638 0.84424 0.94843 0.97820 0.92604 0.89872 0.87968 0.84500 0.86144 0.90995 0.89295 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.29 71.98 0.67 -1.24 16 2 C 0.09 1.75 2.91 30.63 0.09 1.84 16 3 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 4 O -0.40 -10.01 10.47 -148.98 -1.56 -11.57 16 5 C 0.07 1.89 7.01 72.02 0.50 2.40 16 6 C 0.02 0.57 5.30 86.31 0.46 1.03 16 7 N -0.53 -13.92 4.24 -874.53 -3.70 -17.62 16 8 C 0.04 0.97 3.95 85.56 0.34 1.31 16 9 C 0.50 17.92 7.25 87.66 0.64 18.56 16 10 O -0.57 -26.55 14.22 -3.04 -0.04 -26.59 16 11 N -0.60 -21.05 2.46 -826.17 -2.03 -23.08 16 12 C 0.26 12.50 5.16 85.63 0.44 12.94 16 13 C -0.54 -28.82 9.39 25.60 0.24 -28.58 16 14 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 15 C 0.01 0.70 5.46 84.65 0.46 1.16 16 16 N -0.93 -53.40 13.29 21.45 0.28 -53.11 16 17 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 C 0.11 2.68 5.19 86.38 0.45 3.13 16 22 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16 23 C 0.25 5.09 15.44 89.44 1.38 6.47 16 24 N -0.49 -13.08 18.54 20.01 0.37 -12.71 16 25 C 0.05 1.00 2.08 44.92 0.09 1.09 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 C -0.15 -1.98 8.64 71.98 0.62 -1.36 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.88 6.54 -2.39 -0.02 0.86 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 2.66 6.07 -2.39 -0.01 2.64 16 35 H 0.08 1.59 7.05 -2.39 -0.02 1.57 16 36 H 0.14 2.34 5.04 -2.39 -0.01 2.32 16 37 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 38 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 39 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 40 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 41 H 0.10 1.86 6.27 -2.39 -0.01 1.84 16 42 H 0.14 1.58 7.41 -2.39 -0.02 1.56 16 43 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.07 0.81 6.17 -2.39 -0.01 0.80 16 45 H 0.09 0.80 6.54 -2.39 -0.02 0.78 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.77 371.21 2.88 -70.90 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.97 Total: 10.03 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 6.56 Total: 18.27 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -5.08 Total: -106.52 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.60 Total: -38.16 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.77 2.88 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156320277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.335 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds