Wall clock time and date at job start Fri Apr 10 2020 18:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.53557 * 2 1 4 4 C 1.53031 * 109.50581 * 120.10060 * 2 1 3 5 5 N 1.46849 * 109.52500 * 179.12127 * 4 2 1 6 6 C 1.46898 * 111.00172 * 174.16181 * 5 4 2 7 7 C 1.50702 * 109.46959 * 293.63754 * 6 5 4 8 8 O 1.21283 * 119.99965 * 353.88571 * 7 6 5 9 9 N 1.34782 * 119.99884 * 173.88241 * 7 6 5 10 10 C 1.46493 * 119.99739 * 180.02562 * 9 7 6 11 11 C 1.50704 * 109.47307 * 89.99750 * 10 9 7 12 12 H 1.07994 * 119.99629 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99649 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00241 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47016 * 90.00371 * 15 13 11 17 17 H 1.48502 * 109.47390 * 209.99854 * 15 13 11 18 18 H 1.48494 * 109.47558 * 330.00428 * 15 13 11 19 19 C 1.46494 * 120.00095 * 359.97438 * 9 7 6 20 20 C 1.53003 * 109.46812 * 90.00040 * 19 9 7 21 21 C 1.47198 * 109.47310 * 179.97438 * 20 19 9 22 22 N 9.04664 * 129.14185 * 126.94404 * 2 1 3 23 23 C 1.46851 * 111.19352 * 298.25656 * 5 4 2 24 24 C 1.53038 * 109.52500 * 61.74612 * 23 5 4 25 25 C 1.53119 * 109.50166 * 239.90310 * 2 1 3 26 26 H 1.09002 * 109.52623 * 302.30862 * 25 2 1 27 27 O 1.42907 * 109.52004 * 62.43630 * 25 2 1 28 28 H 1.09000 * 109.46878 * 299.89997 * 1 2 3 29 29 H 1.08999 * 109.47481 * 59.90082 * 1 2 3 30 30 H 1.08995 * 109.47420 * 179.90449 * 1 2 3 31 31 H 1.08998 * 109.46403 * 59.10459 * 4 2 1 32 32 H 1.08999 * 109.45207 * 299.12665 * 4 2 1 33 33 H 1.08999 * 109.47036 * 53.63755 * 6 5 4 34 34 H 1.08998 * 109.47443 * 173.64000 * 6 5 4 35 35 H 1.09004 * 109.47279 * 209.99997 * 10 9 7 36 36 H 1.09009 * 109.47675 * 329.99859 * 10 9 7 37 37 H 0.96996 * 119.99832 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.47536 * 210.00103 * 19 9 7 39 39 H 1.09005 * 109.47191 * 330.00837 * 19 9 7 40 40 H 1.09003 * 109.47430 * 299.99756 * 20 19 9 41 41 H 1.09003 * 109.47437 * 60.00088 * 20 19 9 42 42 H 1.09006 * 109.45975 * 181.75458 * 23 5 4 43 43 H 1.08993 * 109.46089 * 301.72443 * 23 5 4 44 44 H 1.08992 * 109.50292 * 180.88052 * 24 23 5 45 45 H 1.08998 * 109.50394 * 60.75378 * 24 23 5 46 46 H 0.96699 * 113.99549 * 180.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0409 -0.7234 1.2480 5 7 3.5093 -0.7421 1.2378 6 6 4.0373 -1.3059 2.4873 7 6 3.7051 -0.3856 3.6335 8 8 3.1881 0.6900 3.4173 9 7 3.9824 -0.7579 4.8988 10 6 3.6589 0.1365 6.0130 11 6 2.2629 -0.1536 6.5011 12 1 1.6757 -0.9272 6.0288 13 6 1.7360 0.5678 7.5513 14 7 0.5179 0.3143 7.9776 15 14 2.7526 1.9043 8.3695 16 1 2.5115 3.1993 7.6839 17 1 2.3612 2.0199 9.7974 18 1 4.1934 1.5565 8.2778 19 6 4.6063 -2.0574 5.1600 20 6 6.1286 -1.9049 5.1428 21 6 6.7556 -3.2104 5.4058 22 7 7.2406 -4.2171 5.6077 23 6 4.0229 -1.4730 0.0722 24 6 3.5711 -0.7719 -1.2109 25 6 2.0411 -0.7238 -1.2488 26 1 1.6452 -1.7391 -1.2691 27 8 1.6130 -0.0208 -2.4170 28 1 -0.3633 0.5123 0.8909 29 1 -0.3634 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0017 31 1 1.6648 -1.7464 1.2543 32 1 1.6906 -0.2021 2.1388 33 1 3.5875 -2.2829 2.6636 34 1 5.1192 -1.4128 2.4090 35 1 4.3683 -0.0234 6.8251 36 1 3.7185 1.1718 5.6771 37 1 0.1471 0.8221 8.7161 38 1 4.2888 -2.4233 6.1363 39 1 4.3036 -2.7671 4.3899 40 1 6.4462 -1.5390 4.1663 41 1 6.4314 -1.1952 5.9127 42 1 5.1121 -1.4961 0.1092 43 1 3.6374 -2.4924 0.0841 44 1 3.9394 -1.3234 -2.0759 45 1 3.9677 0.2432 -1.2299 46 1 1.9016 -0.4247 -3.2468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167188335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:03 Heat of formation + Delta-G solvation = -53.421686 kcal Electronic energy + Delta-G solvation = -26391.564184 eV Core-core repulsion = 22702.390766 eV Total energy + Delta-G solvation = -3689.173418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.01843 -38.87502 -36.98650 -36.33075 -35.26319 -33.34513 -32.79505 -31.64624 -31.02058 -28.69644 -26.85765 -26.20088 -24.07789 -23.39536 -22.25041 -21.47840 -19.84363 -18.52950 -17.75668 -17.46989 -16.86360 -16.70090 -15.99083 -15.48858 -15.33450 -14.83059 -14.72818 -14.55516 -14.17850 -13.88018 -13.71366 -13.48103 -13.21737 -12.95837 -12.74999 -12.58515 -12.52751 -12.35376 -12.26541 -11.92724 -11.80051 -11.63527 -11.60144 -11.44228 -11.09991 -11.05814 -10.85933 -10.72913 -10.56687 -10.25264 -10.16812 -9.94246 -9.60549 -9.10355 -8.63169 -8.24611 -7.90350 -6.13013 -4.12618 2.64927 2.73378 3.21198 3.26032 3.31097 3.33846 3.41130 3.84791 4.07925 4.18778 4.35584 4.61566 4.65797 4.84774 4.93285 4.95676 5.02527 5.10713 5.19642 5.20620 5.25643 5.31659 5.39207 5.43232 5.49182 5.55329 5.63989 5.71030 5.73521 5.83491 5.98032 5.99390 6.05151 6.26732 6.33136 6.42325 6.56846 6.84349 6.99323 7.09430 7.20807 7.49329 7.51082 7.55060 8.08827 8.40930 8.86045 8.91636 9.46800 11.00222 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.004445 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.959515 B = 6298.007225 C = 8355.330676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 H 0.088 0.912 4 C 0.059 3.941 5 N -0.521 5.521 6 C 0.035 3.965 7 C 0.509 3.491 8 O -0.510 6.510 9 N -0.595 5.595 10 C 0.216 3.784 11 C -0.531 4.531 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.117 3.883 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.443 5.443 23 C 0.059 3.941 24 C -0.147 4.147 25 C 0.107 3.893 26 H 0.049 0.951 27 O -0.563 6.563 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.265 0.735 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -4.713 -16.500 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 H 0.106 0.894 4 C -0.069 4.069 5 N -0.245 5.245 6 C -0.096 4.096 7 C 0.295 3.705 8 O -0.385 6.385 9 N -0.327 5.327 10 C 0.095 3.905 11 C -0.569 4.569 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.120 5.120 23 C -0.069 4.069 24 C -0.185 4.185 25 C 0.049 3.951 26 H 0.067 0.933 27 O -0.368 6.368 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 8.212 -4.680 -15.742 18.362 hybrid contribution 0.289 -0.281 0.203 0.451 sum 8.500 -4.961 -15.539 18.394 Atomic orbital electron populations 1.21724 0.94396 1.01555 1.02394 1.21079 0.95925 1.01083 0.91453 0.89405 1.22300 0.86110 0.98701 0.99772 1.61551 1.08983 1.53415 1.00547 1.22086 1.01434 0.96292 0.89836 1.20198 0.79390 0.87627 0.83256 1.90690 1.41171 1.22963 1.83633 1.47902 1.59901 1.18008 1.06932 1.19708 0.96903 0.90248 0.83592 1.21296 0.98138 1.21007 1.16505 0.90753 1.24852 0.94806 0.96722 0.96526 1.69892 1.15018 1.41173 1.27335 0.86872 0.80924 0.83101 0.78897 1.19876 1.21166 1.18988 1.21328 0.88575 0.86616 1.04417 1.19906 0.96558 0.87381 1.05394 1.29059 0.93448 0.94716 0.93006 1.81202 1.09548 1.12030 1.09259 1.22032 1.00102 0.94740 0.90067 1.22296 0.96690 1.02636 0.96902 1.21953 0.92645 0.94523 0.86025 0.93286 1.86557 1.78862 1.55638 1.15763 0.92055 0.91899 0.93246 0.95325 0.87805 0.92264 0.88298 0.95074 0.94212 0.92522 0.88542 0.90486 0.87483 0.86624 0.90417 0.94941 0.91500 0.90001 0.78140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.07 37.16 0.34 -1.47 16 2 C -0.08 -1.01 2.61 -90.54 -0.24 -1.24 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.06 0.84 4.40 -3.84 -0.02 0.82 16 5 N -0.52 -6.87 4.35 -236.11 -1.03 -7.90 16 6 C 0.03 0.43 4.18 -4.98 -0.02 0.41 16 7 C 0.51 8.88 7.21 -10.98 -0.08 8.80 16 8 O -0.51 -11.26 14.28 5.56 0.08 -11.18 16 9 N -0.59 -10.18 2.46 -175.06 -0.43 -10.61 16 10 C 0.22 4.66 4.23 -5.20 -0.02 4.64 16 11 C -0.53 -14.14 9.94 -34.44 -0.34 -14.48 16 12 H 0.07 2.19 8.06 -52.49 -0.42 1.76 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 14 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 15 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -5.72 6.54 56.52 0.37 -5.35 16 19 C 0.12 1.44 5.19 -4.04 -0.02 1.42 16 20 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 21 C 0.22 2.40 15.43 -20.78 -0.32 2.08 16 22 N -0.44 -6.17 18.53 42.14 0.78 -5.39 16 23 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 24 C -0.15 -1.37 5.73 -26.65 -0.15 -1.52 16 25 C 0.11 1.13 2.94 -26.61 -0.08 1.05 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 O -0.56 -5.81 12.77 -35.23 -0.45 -6.26 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.77 7.76 -51.93 -0.40 0.37 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.88 6.05 -51.93 -0.31 1.56 16 33 H 0.06 0.67 7.04 -51.93 -0.37 0.31 16 34 H 0.10 0.94 7.24 -51.93 -0.38 0.57 16 35 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 36 H 0.04 0.93 6.85 -51.92 -0.36 0.58 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 39 H 0.08 0.80 6.27 -51.93 -0.33 0.47 16 40 H 0.11 0.76 7.41 -51.93 -0.38 0.38 16 41 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.65 8.01 -51.93 -0.42 0.24 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.37 2.15 9.09 45.56 0.41 2.56 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -34.37 373.01 -7.28 -41.65 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.71 Total: 1.72 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.25 Total: 2.38 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.10 Total: -49.77 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.37 Total: -17.44 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.37 -7.28 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167188335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.776 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds