Wall clock time and date at job start Fri Apr 10 2020 18:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47331 * 2 1 4 4 O 1.42902 * 109.47164 * 119.99768 * 2 1 3 5 5 C 1.53000 * 109.47321 * 239.99561 * 2 1 3 6 6 H 1.09002 * 110.64824 * 298.30343 * 5 2 1 7 7 C 1.54602 * 110.72203 * 61.45440 * 5 2 1 8 8 C 1.53987 * 105.13937 * 140.49254 * 7 5 2 9 9 N 1.47902 * 107.06164 * 1.22294 * 8 7 5 10 10 C 1.46890 * 111.00189 * 214.15548 * 9 8 7 11 11 C 1.50705 * 109.47064 * 176.64146 * 10 9 8 12 12 O 1.21278 * 120.00035 * 6.03636 * 11 10 9 13 13 N 1.34778 * 119.99829 * 186.04073 * 11 10 9 14 14 C 1.46501 * 119.99594 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47353 * 89.99841 * 14 13 11 16 16 H 1.07996 * 119.99802 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99887 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00538 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99792 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46983 * 270.00233 * 19 17 15 21 21 H 1.48502 * 109.47472 * 30.00291 * 19 17 15 22 22 H 1.48505 * 109.47276 * 150.00202 * 19 17 15 23 23 C 1.46497 * 120.00349 * 359.97438 * 13 11 10 24 24 C 1.53002 * 109.47127 * 270.00440 * 23 13 11 25 25 C 1.47201 * 109.46966 * 180.02562 * 24 23 13 26 26 N 9.83845 * 138.32143 * 288.08040 * 2 1 3 27 27 C 1.48531 * 105.81696 * 334.67056 * 9 8 7 28 28 H 1.09004 * 109.46884 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47424 * 299.99887 * 1 2 3 30 30 H 1.09000 * 109.47275 * 60.00657 * 1 2 3 31 31 H 0.96700 * 114.00163 * 60.00376 * 4 2 1 32 32 H 1.09005 * 110.30756 * 21.57434 * 7 5 2 33 33 H 1.09005 * 110.30851 * 259.41050 * 7 5 2 34 34 H 1.09000 * 109.92022 * 241.87100 * 8 7 5 35 35 H 1.09004 * 110.08337 * 120.66952 * 8 7 5 36 36 H 1.09000 * 109.47722 * 56.64000 * 10 9 8 37 37 H 1.09003 * 109.47363 * 296.63617 * 10 9 8 38 38 H 1.09001 * 109.47218 * 329.99579 * 14 13 11 39 39 H 1.09008 * 109.47083 * 210.00015 * 14 13 11 40 40 H 0.97001 * 120.00297 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.46846 * 29.99838 * 23 13 11 42 42 H 1.08996 * 109.47414 * 150.00073 * 23 13 11 43 43 H 1.09003 * 109.46767 * 299.99447 * 24 23 13 44 44 H 1.08996 * 109.47274 * 59.99547 * 24 23 13 45 45 H 1.09010 * 110.66482 * 157.63572 * 27 9 8 46 46 H 1.08998 * 110.67035 * 280.76753 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 1 1.7122 -1.7609 -1.2535 7 6 1.5710 0.0056 -2.5305 8 6 2.7725 -0.0576 -3.4915 9 7 3.8436 -0.8058 -2.7984 10 6 5.1686 -0.2862 -3.1617 11 6 6.2273 -1.0160 -2.3757 12 8 5.9209 -1.9559 -1.6731 13 7 7.5145 -0.6241 -2.4536 14 6 8.5435 -1.3333 -1.6890 15 6 9.0994 -2.4607 -2.5203 16 1 8.7241 -2.6316 -3.5184 17 6 10.0879 -3.2733 -2.0070 18 7 10.5460 -3.0643 -0.7920 19 14 10.7774 -4.6703 -3.0377 20 1 9.9842 -5.9022 -2.7957 21 1 10.7028 -4.3080 -4.4759 22 1 12.1935 -4.9114 -2.6608 23 6 7.8847 0.5109 -3.3026 24 6 8.2196 0.0083 -4.7084 25 6 8.5921 1.1488 -5.5613 26 7 8.8782 2.0303 -6.2190 27 6 3.5838 -0.6328 -1.3462 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.7211 -1.5952 1.2330 32 1 1.3195 1.0423 -2.3067 33 1 0.7125 -0.5077 -2.9638 34 1 3.1150 0.9506 -3.7246 35 1 2.4915 -0.5755 -4.4086 36 1 5.2164 0.7787 -2.9339 37 1 5.3386 -0.4376 -4.2277 38 1 8.1047 -1.7369 -0.7765 39 1 9.3459 -0.6419 -1.4314 40 1 11.2412 -3.6363 -0.4308 41 1 7.0513 1.2115 -3.3562 42 1 8.7547 1.0128 -2.8793 43 1 9.0529 -0.6922 -4.6548 44 1 7.3496 -0.4936 -5.1317 45 1 4.0518 -1.4337 -0.7736 46 1 3.9355 0.3411 -1.0058 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168386836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:15 Heat of formation + Delta-G solvation = -79.328730 kcal Electronic energy + Delta-G solvation = -26177.790132 eV Core-core repulsion = 22487.493300 eV Total energy + Delta-G solvation = -3690.296832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13694 -39.88237 -38.02716 -37.66331 -36.60676 -34.81597 -33.75138 -32.09665 -31.06662 -29.68147 -29.37030 -27.17745 -25.15538 -24.46756 -23.70205 -22.08444 -21.17659 -19.88191 -18.99678 -18.16001 -17.86493 -17.75434 -17.05873 -16.84009 -16.42585 -16.26528 -15.78953 -15.66865 -15.37432 -14.99028 -14.58825 -14.51889 -14.25575 -14.03863 -13.93014 -13.67221 -13.57555 -13.51907 -13.27558 -13.11309 -12.87026 -12.72321 -12.63608 -12.51938 -12.47103 -12.24888 -12.12594 -12.00590 -11.81002 -11.71179 -11.53041 -11.34591 -10.77820 -10.55023 -10.42445 -9.45850 -9.26519 -8.13209 -6.25171 1.43851 1.46606 1.54489 1.68896 1.84847 1.97184 2.23592 2.47473 3.02953 3.17141 3.19045 3.41487 3.72617 3.75947 3.87121 3.98690 4.06755 4.16846 4.25244 4.32614 4.36292 4.41772 4.42787 4.47765 4.63004 4.73919 4.80974 4.87188 4.94899 4.99282 5.06113 5.08846 5.14077 5.16587 5.27791 5.34363 5.36869 5.42127 5.67207 5.89427 5.95399 6.08359 6.16040 6.61343 6.79431 6.86213 6.86837 7.40053 7.58787 8.94233 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.003854 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.959364 B = 7263.739788 C = 8811.015893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H 0.091 0.909 4 O -0.586 6.586 5 C -0.116 4.116 6 H 0.079 0.921 7 C -0.115 4.115 8 C 0.032 3.968 9 N -0.523 5.523 10 C 0.035 3.965 11 C 0.500 3.500 12 O -0.570 6.570 13 N -0.601 5.601 14 C 0.261 3.739 15 C -0.528 4.528 16 H 0.069 0.931 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.957 3.043 20 H -0.286 1.286 21 H -0.254 1.254 22 H -0.285 1.285 23 C 0.119 3.881 24 C -0.042 4.042 25 C 0.248 3.752 26 N -0.489 5.489 27 C 0.050 3.950 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.386 0.614 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.128 0.872 38 H -0.004 1.004 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.518 9.062 -5.314 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.052 3.948 3 H 0.109 0.891 4 O -0.394 6.394 5 C -0.136 4.136 6 H 0.097 0.903 7 C -0.153 4.153 8 C -0.095 4.095 9 N -0.248 5.248 10 C -0.095 4.095 11 C 0.288 3.712 12 O -0.448 6.448 13 N -0.332 5.332 14 C 0.140 3.860 15 C -0.567 4.567 16 H 0.087 0.913 17 C -0.191 4.191 18 N -0.572 5.572 19 Si 0.782 3.218 20 H -0.212 1.212 21 H -0.178 1.178 22 H -0.211 1.211 23 C -0.006 4.006 24 C -0.083 4.083 25 C -0.069 4.069 26 N -0.167 5.167 27 C -0.078 4.078 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.235 0.765 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.014 0.986 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.133 0.867 44 H 0.148 0.852 45 H 0.077 0.923 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.837 9.866 -5.851 22.055 hybrid contribution 0.812 -1.173 0.395 1.480 sum -18.026 8.693 -5.456 20.743 Atomic orbital electron populations 1.22434 0.94333 1.03235 1.03326 1.21992 0.94168 0.95749 0.82937 0.89135 1.86567 1.78086 1.30222 1.44481 1.22777 0.93833 1.00811 0.96173 0.90277 1.22412 0.97930 1.01463 0.93446 1.23025 0.90995 0.97223 0.98264 1.64522 1.01074 1.53224 1.05979 1.22333 0.88205 0.97499 1.01502 1.21104 0.83644 0.84129 0.82279 1.90654 1.81530 1.30389 1.42267 1.48123 1.07094 1.32502 1.45526 1.18786 0.85088 0.91386 0.90783 1.21774 1.19237 1.14143 1.01550 0.91298 1.25771 0.97266 1.00014 0.96034 1.70055 1.29659 1.40441 1.17047 0.85573 0.77107 0.79281 0.79816 1.21241 1.17815 1.21093 1.21527 1.03257 0.87731 0.88089 1.19876 1.05879 0.90602 0.91923 1.29183 0.91543 0.93520 0.92699 1.81252 1.11151 1.12572 1.11720 1.23113 0.96278 0.99258 0.89112 0.91689 0.92022 0.89881 0.76484 0.89582 0.89232 0.92094 0.89314 0.89788 0.85439 0.98615 0.95659 0.92825 0.87253 0.89509 0.86748 0.85240 0.92253 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.33 71.98 0.67 -1.44 16 2 C 0.11 1.96 3.00 30.59 0.09 2.05 16 3 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 4 O -0.59 -13.41 13.16 -148.98 -1.96 -15.37 16 5 C -0.12 -2.26 2.81 -9.59 -0.03 -2.29 16 6 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.11 -1.57 5.51 31.47 0.17 -1.40 16 8 C 0.03 0.53 6.70 86.44 0.58 1.11 16 9 N -0.52 -13.50 5.11 -887.58 -4.54 -18.04 16 10 C 0.04 0.87 4.03 85.56 0.35 1.22 16 11 C 0.50 18.45 7.31 87.66 0.64 19.09 16 12 O -0.57 -27.53 13.87 -3.02 -0.04 -27.58 16 13 N -0.60 -21.79 2.46 -826.14 -2.03 -23.82 16 14 C 0.26 12.77 5.20 85.63 0.45 13.22 16 15 C -0.53 -27.50 8.92 25.60 0.23 -27.27 16 16 H 0.07 3.39 7.42 -2.91 -0.02 3.37 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 19 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 C 0.12 2.90 5.24 86.38 0.45 3.35 16 24 C -0.04 -0.91 6.03 28.79 0.17 -0.74 16 25 C 0.25 5.87 15.44 89.44 1.38 7.25 16 26 N -0.49 -14.07 18.54 20.01 0.37 -13.69 16 27 C 0.05 1.40 4.86 86.65 0.42 1.82 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.73 7.16 -2.39 -0.02 0.72 16 31 H 0.39 6.47 9.05 -74.06 -0.67 5.80 16 32 H 0.09 0.90 7.61 -2.38 -0.02 0.88 16 33 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.06 0.81 7.68 -2.39 -0.02 0.80 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 1.61 6.92 -2.39 -0.02 1.59 16 37 H 0.13 2.43 7.41 -2.39 -0.02 2.41 16 38 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 39 H 0.03 1.27 7.89 -2.38 -0.02 1.25 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.11 1.87 6.28 -2.39 -0.01 1.86 16 42 H 0.09 2.16 7.89 -2.39 -0.02 2.14 16 43 H 0.11 3.04 7.26 -2.39 -0.02 3.02 16 44 H 0.13 2.27 7.41 -2.39 -0.02 2.25 16 45 H 0.06 2.24 6.43 -2.38 -0.02 2.22 16 46 H 0.03 0.91 7.91 -2.39 -0.02 0.89 16 Total: -1.00 -75.79 376.00 0.47 -75.32 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.31 Total: 15.66 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 6.04 Total: 16.86 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -5.91 Total: -109.86 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -2.00 Total: -42.95 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -75.79 0.47 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168386836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.006 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds