Wall clock time and date at job start Fri Apr 10 2020 18:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47164 * 2 1 4 4 C 1.47445 * 110.99765 * 54.70890 * 3 2 1 5 5 C 1.54318 * 107.23390 * 123.25978 * 4 3 2 6 6 C 1.55265 * 103.08669 * 22.20095 * 5 4 3 7 7 C 1.47841 * 110.99932 * 175.54922 * 3 2 1 8 8 H 1.08995 * 110.37736 * 332.57699 * 7 3 2 9 9 C 1.53003 * 110.37222 * 94.81047 * 7 3 2 10 10 N 1.46501 * 109.46998 * 303.44570 * 9 7 3 11 11 C 1.46762 * 124.35071 * 90.00204 * 10 9 7 12 12 C 1.54481 * 105.47486 * 197.03761 * 11 10 9 13 13 H 1.09010 * 110.96842 * 92.73731 * 12 11 10 14 14 C 1.50693 * 110.97199 * 216.46144 * 12 11 10 15 15 O 1.21298 * 119.99912 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00198 * 180.02562 * 14 12 11 17 17 C 1.37103 * 119.99767 * 179.72810 * 16 14 12 18 18 H 1.08001 * 119.99856 * 0.27268 * 17 16 14 19 19 C 1.38950 * 119.99472 * 180.27280 * 17 16 14 20 20 N 1.31402 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99498 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47424 * 90.00337 * 21 19 17 23 23 H 1.48502 * 109.46962 * 210.00041 * 21 19 17 24 24 H 1.48502 * 109.47594 * 329.99935 * 21 19 17 25 25 C 1.54625 * 101.76420 * 334.58413 * 12 11 10 26 26 C 1.34421 * 124.35143 * 270.02819 * 10 9 7 27 27 O 1.21286 * 124.93648 * 359.59992 * 26 10 9 28 28 H 1.08994 * 109.47638 * 177.29830 * 1 2 3 29 29 H 1.09001 * 109.47292 * 297.30167 * 1 2 3 30 30 H 1.09001 * 109.47241 * 57.29914 * 1 2 3 31 31 H 1.08993 * 109.47374 * 240.00281 * 2 1 3 32 32 H 1.09001 * 109.47121 * 119.99597 * 2 1 3 33 33 H 1.09000 * 109.88795 * 242.65949 * 4 3 2 34 34 H 1.09003 * 109.89177 * 3.68907 * 4 3 2 35 35 H 1.09001 * 110.71151 * 140.66623 * 5 4 3 36 36 H 1.09010 * 110.70611 * 263.90075 * 5 4 3 37 37 H 1.08999 * 111.08986 * 206.38870 * 6 5 4 38 38 H 1.08996 * 110.94032 * 82.53081 * 6 5 4 39 39 H 1.09000 * 109.47199 * 183.44539 * 9 7 3 40 40 H 1.08994 * 109.47345 * 63.44329 * 9 7 3 41 41 H 1.08994 * 110.24834 * 78.03367 * 11 10 9 42 42 H 1.09001 * 110.24335 * 316.03212 * 11 10 9 43 43 H 0.96992 * 119.99574 * 0.02562 * 16 14 12 44 44 H 0.97001 * 119.99819 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.48862 * 143.47635 * 25 12 11 46 46 H 1.09001 * 110.48431 * 266.12030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4460 2.1482 1.1236 5 6 2.6259 2.7053 1.9476 6 6 3.7979 2.7030 0.9293 7 6 3.4936 1.4258 0.1071 8 1 3.8608 0.5422 0.6290 9 6 4.1261 1.5237 -1.2826 10 7 3.6718 0.4005 -2.1062 11 6 2.4738 0.4263 -2.9535 12 6 2.1576 -1.0532 -3.2655 13 1 1.4522 -1.4623 -2.5420 14 6 1.6357 -1.2086 -4.6706 15 8 1.5169 -0.2352 -5.3845 16 7 1.3010 -2.4291 -5.1341 17 6 0.8209 -2.5696 -6.4106 18 1 0.7152 -1.7029 -7.0462 19 6 0.4704 -3.8272 -6.8864 20 7 0.5987 -4.8816 -6.1128 21 14 -0.1830 -4.0187 -8.6259 22 1 0.9495 -4.2556 -9.5568 23 1 -1.1172 -5.1718 -8.6795 24 1 -0.9007 -2.7812 -9.0243 25 6 3.5489 -1.7112 -3.1159 26 6 4.2983 -0.7863 -2.1824 27 8 5.3160 -1.0739 -1.5887 28 1 -0.3634 -1.0264 -0.0484 29 1 -0.3634 0.4714 0.9132 30 1 -0.3634 0.5552 -0.8648 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8395 2.9698 0.7424 34 1 0.8345 1.4925 1.7435 35 1 2.4132 3.7183 2.2892 36 1 2.8493 2.0520 2.7911 37 1 4.7588 2.6206 1.4373 38 1 3.7668 3.5907 0.2975 39 1 5.2118 1.4912 -1.1908 40 1 3.8292 2.4617 -1.7517 41 1 2.6756 0.9714 -3.8756 42 1 1.6426 0.8847 -2.4177 43 1 1.3956 -3.2074 -4.5630 44 1 0.3543 -5.7595 -6.4452 45 1 3.4560 -2.7041 -2.6758 46 1 4.0505 -1.7665 -4.0821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246639426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:28 Heat of formation + Delta-G solvation = -64.397769 kcal Electronic energy + Delta-G solvation = -26991.197463 eV Core-core repulsion = 23301.548086 eV Total energy + Delta-G solvation = -3689.649377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67123 -39.13379 -38.07668 -35.85818 -34.04610 -33.82996 -32.75901 -31.25240 -29.63793 -28.71193 -27.29313 -25.93272 -24.83556 -22.99828 -22.26657 -20.95389 -20.41134 -19.06915 -18.94989 -17.93480 -17.19075 -16.45114 -16.37735 -15.82732 -15.29626 -14.85646 -14.44240 -14.30921 -14.05341 -13.94275 -13.87815 -13.46903 -13.32446 -13.18497 -12.84996 -12.51214 -12.42215 -12.21956 -11.79669 -11.61877 -11.60293 -11.50961 -11.34892 -11.22533 -11.15826 -11.00556 -10.90283 -10.87782 -10.75425 -10.43287 -10.26142 -9.62721 -9.56972 -8.75206 -8.45952 -8.18623 -8.04882 -6.48402 -3.89628 2.79907 3.13403 3.17282 3.24096 3.29569 3.75384 3.78200 4.11159 4.39773 4.47465 4.55238 4.72679 4.77505 4.92734 5.00934 5.07688 5.15117 5.17347 5.22939 5.29321 5.32824 5.41453 5.45312 5.51338 5.54883 5.58074 5.65648 5.69581 5.79958 5.84286 5.91515 5.96287 5.98328 6.06079 6.14748 6.21296 6.29705 6.42130 6.72555 6.88028 6.98412 7.34474 7.49349 7.97682 8.39085 8.51216 9.09639 9.45290 9.94934 10.68693 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.003426 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.152770 B = 8170.555316 C = 8640.036999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.037 3.963 3 N -0.518 5.518 4 C 0.039 3.961 5 C -0.141 4.141 6 C -0.121 4.121 7 C 0.054 3.946 8 H 0.058 0.942 9 C 0.144 3.856 10 N -0.609 5.609 11 C 0.119 3.881 12 C -0.113 4.113 13 H 0.098 0.902 14 C 0.449 3.551 15 O -0.591 6.591 16 N -0.553 5.553 17 C -0.303 4.303 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.930 3.070 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.145 4.145 26 C 0.517 3.483 27 O -0.545 6.545 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.394 0.606 44 H 0.273 0.727 45 H 0.103 0.897 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 10.961 15.487 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.090 4.090 3 N -0.243 5.243 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.160 4.160 7 C -0.056 4.056 8 H 0.076 0.924 9 C 0.021 3.979 10 N -0.342 5.342 11 C -0.004 4.004 12 C -0.136 4.136 13 H 0.116 0.884 14 C 0.234 3.766 15 O -0.476 6.476 16 N -0.187 5.187 17 C -0.433 4.433 18 H 0.122 0.878 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.757 3.243 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.186 4.186 26 C 0.306 3.694 27 O -0.423 6.423 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.227 0.773 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.618 11.516 14.825 18.954 hybrid contribution -0.159 -1.176 0.308 1.226 sum 2.459 10.340 15.133 18.492 Atomic orbital electron populations 1.21912 0.94730 1.02178 1.02339 1.22491 0.95961 0.89148 1.01447 1.63550 1.05348 1.12822 1.42555 1.22882 0.96737 0.98015 0.91269 1.22788 0.95574 1.01583 0.98026 1.22712 0.98399 0.97660 0.97242 1.23069 0.88371 0.97928 0.96207 0.92359 1.21324 0.98454 0.89121 0.88968 1.48245 1.27577 1.13482 1.44871 1.22091 0.87214 0.96105 0.94951 1.22137 0.96643 0.96333 0.98444 0.88359 1.19331 0.85156 0.84380 0.87770 1.90530 1.59787 1.38466 1.58867 1.41847 1.55653 1.06948 1.14264 1.19734 1.39149 0.94768 0.89630 0.87754 1.25281 0.97475 0.94898 1.00052 1.69605 1.47932 0.99291 1.36913 0.85856 0.78696 0.78057 0.81694 1.20337 1.20888 1.19329 1.22360 0.95395 0.99573 1.01263 1.20979 0.83959 0.83159 0.81338 1.90677 1.24500 1.78306 1.48867 0.92003 0.92852 0.91406 0.89444 0.95460 0.90518 0.92425 0.90755 0.91758 0.90737 0.90268 0.90006 0.89756 0.89293 0.88852 0.77282 0.91714 0.87821 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.62 37.16 0.36 -1.24 16 2 C 0.04 0.43 4.55 -3.82 -0.02 0.41 16 3 N -0.52 -5.58 3.98 -223.38 -0.89 -6.47 16 4 C 0.04 0.35 6.17 -2.84 -0.02 0.33 16 5 C -0.14 -1.08 6.94 -24.84 -0.17 -1.25 16 6 C -0.12 -0.99 6.51 -24.52 -0.16 -1.15 16 7 C 0.05 0.58 2.81 -66.19 -0.19 0.39 16 8 H 0.06 0.73 7.70 -51.93 -0.40 0.33 16 9 C 0.14 1.70 5.70 -4.04 -0.02 1.68 16 10 N -0.61 -8.65 1.93 -172.42 -0.33 -8.99 16 11 C 0.12 1.80 5.43 -3.12 -0.02 1.79 16 12 C -0.11 -1.86 2.95 -90.14 -0.27 -2.13 16 13 H 0.10 1.45 7.09 -51.92 -0.37 1.08 16 14 C 0.45 9.85 7.01 -10.99 -0.08 9.77 16 15 O -0.59 -14.98 15.08 5.54 0.08 -14.90 16 16 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 16 17 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -23.61 13.05 55.50 0.72 -22.88 16 21 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 C -0.15 -2.31 6.41 -26.75 -0.17 -2.48 16 26 C 0.52 8.48 7.73 -10.86 -0.08 8.39 16 27 O -0.55 -10.43 17.59 5.55 0.10 -10.34 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.49 6.29 -51.93 -0.33 0.16 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.13 3.39 -51.93 -0.18 0.95 16 32 H 0.03 0.32 7.98 -51.93 -0.41 -0.09 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.50 5.97 -51.93 -0.31 0.19 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 39 H 0.08 0.98 7.92 -51.93 -0.41 0.56 16 40 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 41 H 0.09 1.54 6.96 -51.93 -0.36 1.18 16 42 H 0.09 1.34 6.43 -51.93 -0.33 1.01 16 43 H 0.39 9.06 7.90 -40.82 -0.32 8.74 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.11 1.85 7.89 -51.93 -0.41 1.44 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -30.50 358.86 -8.20 -38.70 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.14 Total: 10.54 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.07 Total: 6.80 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.56 Total: -51.63 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.18 Total: -25.24 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.50 -8.20 -38.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246639426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.699 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds