Wall clock time and date at job start Fri Apr 10 2020 18:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47164 * 2 1 4 4 C 1.47445 * 110.99765 * 54.70890 * 3 2 1 5 5 C 1.54318 * 107.23390 * 123.25978 * 4 3 2 6 6 C 1.55265 * 103.08669 * 22.20095 * 5 4 3 7 7 C 1.47841 * 110.99932 * 175.54922 * 3 2 1 8 8 H 1.08995 * 110.37736 * 332.57699 * 7 3 2 9 9 C 1.53003 * 110.37222 * 94.81047 * 7 3 2 10 10 N 1.46501 * 109.46998 * 303.44570 * 9 7 3 11 11 C 1.46762 * 124.35071 * 90.00204 * 10 9 7 12 12 C 1.54481 * 105.47486 * 197.03761 * 11 10 9 13 13 H 1.09010 * 110.96842 * 92.73731 * 12 11 10 14 14 C 1.50693 * 110.97199 * 216.46144 * 12 11 10 15 15 O 1.21298 * 119.99912 * 0.02562 * 14 12 11 16 16 N 1.34778 * 120.00198 * 180.02562 * 14 12 11 17 17 C 1.37103 * 119.99767 * 179.72810 * 16 14 12 18 18 H 1.08001 * 119.99856 * 0.27268 * 17 16 14 19 19 C 1.38950 * 119.99472 * 180.27280 * 17 16 14 20 20 N 1.31402 * 120.00116 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99498 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47424 * 90.00337 * 21 19 17 23 23 H 1.48502 * 109.46962 * 210.00041 * 21 19 17 24 24 H 1.48502 * 109.47594 * 329.99935 * 21 19 17 25 25 C 1.54625 * 101.76420 * 334.58413 * 12 11 10 26 26 C 1.34421 * 124.35143 * 270.02819 * 10 9 7 27 27 O 1.21286 * 124.93648 * 359.59992 * 26 10 9 28 28 H 1.08994 * 109.47638 * 177.29830 * 1 2 3 29 29 H 1.09001 * 109.47292 * 297.30167 * 1 2 3 30 30 H 1.09001 * 109.47241 * 57.29914 * 1 2 3 31 31 H 1.08993 * 109.47374 * 240.00281 * 2 1 3 32 32 H 1.09001 * 109.47121 * 119.99597 * 2 1 3 33 33 H 1.09000 * 109.88795 * 242.65949 * 4 3 2 34 34 H 1.09003 * 109.89177 * 3.68907 * 4 3 2 35 35 H 1.09001 * 110.71151 * 140.66623 * 5 4 3 36 36 H 1.09010 * 110.70611 * 263.90075 * 5 4 3 37 37 H 1.08999 * 111.08986 * 206.38870 * 6 5 4 38 38 H 1.08996 * 110.94032 * 82.53081 * 6 5 4 39 39 H 1.09000 * 109.47199 * 183.44539 * 9 7 3 40 40 H 1.08994 * 109.47345 * 63.44329 * 9 7 3 41 41 H 1.08994 * 110.24834 * 78.03367 * 11 10 9 42 42 H 1.09001 * 110.24335 * 316.03212 * 11 10 9 43 43 H 0.96992 * 119.99574 * 0.02562 * 16 14 12 44 44 H 0.97001 * 119.99819 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.48862 * 143.47635 * 25 12 11 46 46 H 1.09001 * 110.48431 * 266.12030 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4460 2.1482 1.1236 5 6 2.6259 2.7053 1.9476 6 6 3.7979 2.7030 0.9293 7 6 3.4936 1.4258 0.1071 8 1 3.8608 0.5422 0.6290 9 6 4.1261 1.5237 -1.2826 10 7 3.6718 0.4005 -2.1062 11 6 2.4738 0.4263 -2.9535 12 6 2.1576 -1.0532 -3.2655 13 1 1.4522 -1.4623 -2.5420 14 6 1.6357 -1.2086 -4.6706 15 8 1.5169 -0.2352 -5.3845 16 7 1.3010 -2.4291 -5.1341 17 6 0.8209 -2.5696 -6.4106 18 1 0.7152 -1.7029 -7.0462 19 6 0.4704 -3.8272 -6.8864 20 7 0.5987 -4.8816 -6.1128 21 14 -0.1830 -4.0187 -8.6259 22 1 0.9495 -4.2556 -9.5568 23 1 -1.1172 -5.1718 -8.6795 24 1 -0.9007 -2.7812 -9.0243 25 6 3.5489 -1.7112 -3.1159 26 6 4.2983 -0.7863 -2.1824 27 8 5.3160 -1.0739 -1.5887 28 1 -0.3634 -1.0264 -0.0484 29 1 -0.3634 0.4714 0.9132 30 1 -0.3634 0.5552 -0.8648 31 1 1.8933 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.8395 2.9698 0.7424 34 1 0.8345 1.4925 1.7435 35 1 2.4132 3.7183 2.2892 36 1 2.8493 2.0520 2.7911 37 1 4.7588 2.6206 1.4373 38 1 3.7668 3.5907 0.2975 39 1 5.2118 1.4912 -1.1908 40 1 3.8292 2.4617 -1.7517 41 1 2.6756 0.9714 -3.8756 42 1 1.6426 0.8847 -2.4177 43 1 1.3956 -3.2074 -4.5630 44 1 0.3543 -5.7595 -6.4452 45 1 3.4560 -2.7041 -2.6758 46 1 4.0505 -1.7665 -4.0821 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246639426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:27 Heat of formation + Delta-G solvation = -84.001560 kcal Electronic energy + Delta-G solvation = -26992.047547 eV Core-core repulsion = 23301.548086 eV Total energy + Delta-G solvation = -3690.499461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93885 -40.19415 -39.68147 -37.26739 -35.95986 -34.79704 -33.87135 -33.11428 -30.66253 -29.50534 -28.65966 -27.38257 -26.23061 -23.97193 -23.63143 -21.75172 -21.33769 -20.72821 -20.16083 -19.82943 -18.49371 -17.71791 -17.39483 -16.97696 -16.66609 -16.38691 -15.89974 -15.65268 -15.62903 -15.22888 -14.87719 -14.60676 -14.42164 -14.35080 -14.02090 -13.87918 -13.69099 -13.41461 -13.27316 -12.92125 -12.67434 -12.55533 -12.49517 -12.41814 -12.27361 -12.18596 -12.08434 -12.06202 -11.98032 -11.65563 -11.55934 -11.50600 -10.99594 -10.33925 -10.01913 -9.80422 -9.15596 -8.46005 -5.94572 1.38779 1.44763 1.47271 1.56553 1.94622 2.02387 2.31081 2.93634 3.03273 3.18409 3.39971 3.57877 3.69754 3.73973 3.95238 4.03902 4.05816 4.18077 4.20704 4.29871 4.34755 4.47027 4.50908 4.59837 4.61624 4.63040 4.69451 4.77731 4.79555 4.88963 4.96123 5.00262 5.04020 5.06822 5.13338 5.20525 5.33195 5.38181 5.43531 5.55739 5.97397 6.00459 6.13086 6.16987 6.57354 7.09165 7.11966 7.54424 8.07627 8.70826 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022774 B = 0.003426 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.152770 B = 8170.555316 C = 8640.036999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.039 3.961 3 N -0.525 5.525 4 C 0.036 3.964 5 C -0.135 4.135 6 C -0.116 4.116 7 C 0.056 3.944 8 H 0.038 0.962 9 C 0.139 3.861 10 N -0.598 5.598 11 C 0.132 3.868 12 C -0.100 4.100 13 H 0.123 0.877 14 C 0.453 3.547 15 O -0.625 6.625 16 N -0.561 5.561 17 C -0.334 4.334 18 H 0.083 0.917 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.990 3.010 22 H -0.273 1.273 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.141 4.141 26 C 0.518 3.482 27 O -0.574 6.574 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.119 0.881 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 11.740 16.546 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 N -0.250 5.250 4 C -0.091 4.091 5 C -0.174 4.174 6 C -0.154 4.154 7 C -0.053 4.053 8 H 0.056 0.944 9 C 0.017 3.983 10 N -0.329 5.329 11 C 0.009 3.991 12 C -0.122 4.122 13 H 0.140 0.860 14 C 0.240 3.760 15 O -0.513 6.513 16 N -0.196 5.196 17 C -0.464 4.464 18 H 0.101 0.899 19 C -0.210 4.210 20 N -0.557 5.557 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.182 4.182 26 C 0.307 3.693 27 O -0.454 6.454 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.193 12.312 15.909 20.236 hybrid contribution -0.017 -1.355 0.009 1.355 sum 2.176 10.958 15.918 19.447 Atomic orbital electron populations 1.21869 0.93885 1.02294 1.02604 1.22424 0.96605 0.89517 1.00390 1.63536 1.05313 1.12436 1.43742 1.22942 0.97285 0.97936 0.90924 1.22770 0.94507 1.02516 0.97567 1.22713 0.99133 0.96436 0.97129 1.22986 0.88370 0.98556 0.95401 0.94390 1.21576 0.98625 0.88637 0.89460 1.48255 1.26724 1.13538 1.44391 1.21906 0.87858 0.94881 0.94439 1.22004 0.97284 0.97694 0.95172 0.85959 1.20131 0.83351 0.83194 0.89343 1.90508 1.60751 1.39462 1.60545 1.41881 1.56271 1.07744 1.13748 1.19705 1.41111 0.94657 0.90884 0.89900 1.26006 0.97193 0.94273 1.03484 1.69664 1.48121 0.99623 1.38260 0.84964 0.78241 0.78031 0.77366 1.19863 1.19741 1.19524 1.22319 0.94584 1.00478 1.00797 1.20924 0.83616 0.83708 0.81067 1.90663 1.25731 1.78917 1.50116 0.91878 0.91546 0.92251 0.91085 0.95947 0.90045 0.92203 0.89004 0.91775 0.89860 0.89321 0.90065 0.88247 0.91198 0.87559 0.76854 0.91266 0.86316 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.62 71.98 0.69 -2.17 16 2 C 0.04 0.84 4.55 86.30 0.39 1.23 16 3 N -0.53 -10.42 3.98 -860.65 -3.43 -13.84 16 4 C 0.04 0.57 6.17 86.65 0.53 1.10 16 5 C -0.14 -1.70 6.94 31.82 0.22 -1.48 16 6 C -0.12 -1.61 6.51 32.02 0.21 -1.40 16 7 C 0.06 1.12 2.81 45.39 0.13 1.25 16 8 H 0.04 0.93 7.70 -2.39 -0.02 0.91 16 9 C 0.14 3.09 5.70 86.38 0.49 3.59 16 10 N -0.60 -16.52 1.93 -817.99 -1.58 -18.10 16 11 C 0.13 3.91 5.43 86.83 0.47 4.38 16 12 C -0.10 -3.23 2.95 -10.49 -0.03 -3.26 16 13 H 0.12 3.45 7.09 -2.38 -0.02 3.43 16 14 C 0.45 20.08 7.01 87.65 0.61 20.69 16 15 O -0.63 -32.28 15.08 -3.08 -0.05 -32.33 16 16 N -0.56 -27.24 5.29 -306.98 -1.62 -28.86 16 17 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 20 N -0.92 -47.96 13.05 21.66 0.28 -47.68 16 21 Si 0.99 41.68 29.55 68.60 2.03 43.71 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 C -0.14 -4.45 6.41 30.59 0.20 -4.25 16 26 C 0.52 16.77 7.73 87.90 0.68 17.45 16 27 O -0.57 -21.82 17.59 -3.05 -0.05 -21.87 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.09 6.29 -2.39 -0.02 1.07 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.75 3.39 -2.39 -0.01 1.74 16 32 H 0.02 0.50 7.98 -2.39 -0.02 0.49 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 0.91 5.97 -2.39 -0.01 0.89 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.09 8.00 -2.39 -0.02 1.08 16 39 H 0.08 1.85 7.92 -2.39 -0.02 1.83 16 40 H 0.10 1.93 8.06 -2.39 -0.02 1.91 16 41 H 0.07 2.41 6.96 -2.39 -0.02 2.39 16 42 H 0.11 2.92 6.43 -2.39 -0.02 2.91 16 43 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 44 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 45 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 46 H 0.10 3.31 7.89 -2.39 -0.02 3.30 16 Total: -1.00 -65.44 358.86 1.72 -63.72 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.26 Total: 35.48 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 5.88 Total: 19.78 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -6.35 Total: -108.48 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.10 Total: -54.20 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -65.44 1.72 -63.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246639426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.286 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds