Wall clock time and date at job start Fri Apr 10 2020 18:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99743 * 2 1 4 4 N 1.34778 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.47069 * 136.05342 * 359.62112 * 4 2 1 6 6 C 1.53491 * 87.98331 * 207.38613 * 5 4 2 7 7 C 1.50703 * 114.20368 * 220.34653 * 6 5 4 8 8 O 1.34928 * 119.99659 * 178.59947 * 7 6 5 9 9 N 1.29032 * 120.00378 * 358.59656 * 7 6 5 10 10 C 1.46500 * 120.00385 * 186.71158 * 9 7 6 11 11 C 1.53007 * 109.46883 * 246.23622 * 10 9 7 12 12 C 1.53039 * 109.46073 * 295.06735 * 11 10 9 13 13 C 1.53197 * 109.30885 * 178.61235 * 12 11 10 14 14 N 1.46928 * 108.77583 * 54.63673 * 13 12 11 15 15 C 1.36930 * 120.62903 * 126.40960 * 14 13 12 16 16 H 1.08004 * 120.00435 * 325.53497 * 15 14 13 17 17 C 1.38819 * 119.99975 * 145.54133 * 15 14 13 18 18 N 1.31618 * 119.99542 * 333.75350 * 17 15 14 19 19 Si 1.86799 * 120.00126 * 153.75313 * 17 15 14 20 20 H 1.48508 * 109.46930 * 59.99790 * 19 17 15 21 21 H 1.48492 * 109.47110 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47393 * 300.00043 * 19 17 15 23 23 C 1.46923 * 118.73776 * 306.39316 * 14 13 12 24 24 C 1.53035 * 109.45851 * 174.99508 * 11 10 9 25 25 C 1.47066 * 136.06235 * 180.02562 * 4 2 1 26 26 H 1.08999 * 109.47605 * 239.99698 * 1 2 3 27 27 H 1.09004 * 109.47142 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47576 * 119.99369 * 1 2 3 29 29 H 1.09003 * 113.46657 * 322.16209 * 5 4 2 30 30 H 1.08993 * 113.46977 * 92.60013 * 5 4 2 31 31 H 1.09004 * 114.21141 * 87.52011 * 6 5 4 32 32 H 0.96707 * 113.99491 * 185.59622 * 8 7 6 33 33 H 1.08994 * 109.47273 * 6.23269 * 10 9 7 34 34 H 1.08998 * 109.47179 * 126.24139 * 10 9 7 35 35 H 1.09002 * 109.45546 * 55.02853 * 11 10 9 36 36 H 1.08995 * 109.49410 * 298.56350 * 12 11 10 37 37 H 1.08999 * 109.49661 * 58.66145 * 12 11 10 38 38 H 1.08994 * 109.58505 * 294.84798 * 13 12 11 39 39 H 1.09000 * 109.70112 * 174.49019 * 13 12 11 40 40 H 0.97003 * 119.99600 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.58145 * 293.81521 * 23 14 13 42 42 H 1.08999 * 109.70335 * 173.46945 * 23 14 13 43 43 H 1.08997 * 109.50312 * 301.34235 * 24 11 10 44 44 H 1.09004 * 109.49683 * 61.40894 * 24 11 10 45 45 H 1.08995 * 113.46431 * 267.39927 * 25 4 2 46 46 H 1.09001 * 113.46279 * 37.83058 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 0.0056 6 6 3.1654 -2.8683 0.7043 7 6 3.8767 -4.1034 0.2146 8 8 5.0781 -4.4387 0.7293 9 7 3.3370 -4.8401 -0.6969 10 6 3.9543 -6.1157 -1.0684 11 6 4.4638 -6.0353 -2.5089 12 6 3.2775 -5.8654 -3.4606 13 6 3.7939 -5.7504 -4.8983 14 7 4.6405 -6.9150 -5.1912 15 6 4.3946 -7.6984 -6.2870 16 1 3.3791 -7.8640 -6.6156 17 6 5.4504 -8.2799 -6.9756 18 7 6.6418 -7.7213 -6.9471 19 14 5.1801 -9.8552 -7.9425 20 1 4.1531 -9.6232 -8.9898 21 1 6.4548 -10.2679 -8.5827 22 1 4.7173 -10.9266 -7.0242 23 6 5.7563 -7.2227 -4.2862 24 6 5.2180 -7.3210 -2.8554 25 6 3.5941 -1.5740 -0.0002 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8901 29 1 0.9591 -2.8237 0.6246 30 1 1.7602 -3.0296 -0.9915 31 1 3.1261 -2.7934 1.7911 32 1 5.4946 -5.1957 0.2949 33 1 4.7888 -6.3242 -0.3990 34 1 3.2160 -6.9136 -0.9882 35 1 5.1350 -5.1823 -2.6094 36 1 2.6187 -6.7298 -3.3786 37 1 2.7272 -4.9617 -3.1983 38 1 4.3793 -4.8372 -5.0044 39 1 2.9521 -5.7274 -5.5904 40 1 7.3796 -8.1279 -7.4280 41 1 6.5018 -6.4295 -4.3425 42 1 6.2103 -8.1716 -4.5719 43 1 6.0488 -7.4536 -2.1624 44 1 4.5410 -8.1719 -2.7786 45 1 3.9990 -1.7370 -0.9990 46 1 4.2294 -0.9356 0.6137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328843507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:43 Heat of formation + Delta-G solvation = -1.602405 kcal Electronic energy + Delta-G solvation = -25747.953631 eV Core-core repulsion = 22061.027265 eV Total energy + Delta-G solvation = -3686.926366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97779 -39.50985 -38.03612 -37.54613 -34.52410 -32.89359 -31.60573 -30.73922 -29.88659 -29.10505 -26.87372 -26.30647 -24.61530 -23.24773 -22.17417 -21.17149 -20.22918 -19.18658 -19.13416 -17.83171 -17.24643 -16.88081 -16.74735 -16.03336 -15.34664 -15.05935 -14.78753 -14.23569 -14.07500 -13.62888 -13.52326 -13.44926 -13.23252 -13.13577 -12.92248 -12.75108 -12.69265 -12.64262 -12.34737 -12.01702 -11.84411 -11.31538 -11.20859 -11.09225 -10.72099 -10.66956 -10.35511 -10.23194 -10.17327 -10.03387 -9.86953 -9.61830 -9.42270 -9.11956 -8.99826 -8.42499 -6.61988 -5.82576 -3.25364 1.98476 2.32357 2.45596 3.22926 3.37023 3.43524 3.45661 3.69696 4.12852 4.31522 4.49842 4.55342 4.70552 4.89596 4.91154 5.04800 5.09698 5.21944 5.23858 5.28739 5.33108 5.35686 5.36777 5.58993 5.59672 5.70063 5.70998 5.77320 5.95251 6.07475 6.14497 6.33991 6.40776 6.52731 6.60137 6.70157 6.75612 6.88375 7.03747 7.20100 7.37880 7.44286 7.83911 7.84481 7.98105 8.47231 9.18755 9.83197 10.46263 11.23674 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002693 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424600 B =10393.622467 C =11045.733392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.542 3.458 3 O -0.547 6.547 4 N -0.652 5.652 5 C 0.124 3.876 6 C -0.058 4.058 7 C 0.339 3.661 8 O -0.524 6.524 9 N -0.564 5.564 10 C 0.047 3.953 11 C -0.072 4.072 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.588 5.588 15 C -0.266 4.266 16 H 0.061 0.939 17 C 0.014 3.986 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.176 3.824 24 C -0.136 4.136 25 C 0.119 3.881 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.401 0.599 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.013 0.987 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.018 0.982 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 8.093 18.475 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.333 3.667 3 O -0.424 6.424 4 N -0.389 5.389 5 C 0.001 3.999 6 C -0.078 4.078 7 C 0.111 3.889 8 O -0.323 6.323 9 N -0.301 5.301 10 C -0.081 4.081 11 C -0.091 4.091 12 C -0.155 4.155 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.395 4.395 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.050 3.950 24 C -0.176 4.176 25 C -0.005 4.005 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.259 0.741 33 H 0.049 0.951 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.378 9.223 18.231 22.481 hybrid contribution 1.060 -1.790 -0.539 2.149 sum -8.318 7.433 17.692 20.915 Atomic orbital electron populations 1.21861 0.90861 1.05443 1.04471 1.20396 0.90165 0.81095 0.75012 1.90742 1.70903 1.30325 1.50419 1.49605 1.09370 1.05988 1.73890 1.23003 0.96041 0.78198 1.02687 1.21594 0.96094 0.88621 1.01495 1.23956 0.82887 0.94110 0.87948 1.84745 1.32831 1.53112 1.61623 1.72258 1.35450 1.07508 1.14869 1.22270 0.97680 0.91046 0.97133 1.21088 0.97662 0.98687 0.91666 1.21911 0.96301 1.00775 0.96504 1.20950 0.94187 0.90089 0.93028 1.43969 1.33191 1.27905 1.26059 1.18993 0.91775 1.23673 1.05092 0.92150 1.25110 0.96536 0.99979 0.97088 1.70163 1.01632 1.37240 1.43901 0.86545 0.76977 0.84605 0.79767 1.20694 1.21697 1.20923 1.20592 0.89381 0.99662 0.85400 1.22224 0.98751 0.96368 1.00212 1.22913 0.84706 0.91702 1.01219 0.89388 0.88843 0.89160 0.89649 0.86961 0.85337 0.74051 0.95098 0.89101 0.92292 0.92637 0.92354 0.96942 0.92915 0.93612 0.96393 0.91554 0.93580 0.92317 0.88931 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.15 36.00 0.37 -0.69 16 2 C 0.54 5.80 8.19 -10.99 -0.09 5.71 16 3 O -0.55 -8.31 17.86 5.56 0.10 -8.21 16 4 N -0.65 -6.01 3.69 -185.26 -0.68 -6.70 16 5 C 0.12 0.88 7.74 -8.51 -0.07 0.82 16 6 C -0.06 -0.44 4.61 -91.27 -0.42 -0.86 16 7 C 0.34 3.26 7.53 -13.45 -0.10 3.16 16 8 O -0.52 -5.06 13.52 -16.50 -0.22 -5.28 16 9 N -0.56 -6.31 8.64 -58.56 -0.51 -6.81 16 10 C 0.05 0.56 5.52 -4.04 -0.02 0.54 16 11 C -0.07 -1.11 2.36 -90.58 -0.21 -1.32 16 12 C -0.12 -1.97 5.26 -26.61 -0.14 -2.11 16 13 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 14 N -0.59 -14.67 2.94 -172.32 -0.51 -15.18 16 15 C -0.27 -7.33 9.43 -15.06 -0.14 -7.47 16 16 H 0.06 1.65 7.95 -52.48 -0.42 1.24 16 17 C 0.01 0.38 4.61 -17.43 -0.08 0.30 16 18 N -0.89 -25.94 12.33 55.49 0.68 -25.25 16 19 Si 0.89 21.48 29.63 -169.99 -5.04 16.45 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.18 4.04 5.41 -3.71 -0.02 4.02 16 24 C -0.14 -2.37 5.36 -26.62 -0.14 -2.51 16 25 C 0.12 1.06 8.18 -8.52 -0.07 0.99 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.11 0.95 7.36 -51.93 -0.38 0.56 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.40 3.27 5.98 45.56 0.27 3.54 16 33 H 0.03 0.31 5.52 -51.93 -0.29 0.02 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 1.69 6.84 -51.93 -0.36 1.33 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 0.90 8.10 -51.93 -0.42 0.47 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -33.65 372.33 -8.76 -42.41 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.03 Total: -0.64 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.17 Total: 3.61 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.01 Total: -53.94 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.12 Total: -13.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.65 -8.76 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328843507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.805 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds