Wall clock time and date at job start Fri Apr 10 2020 18:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99743 * 2 1 4 4 N 1.34778 * 120.00235 * 180.02562 * 2 1 3 5 5 C 1.47069 * 136.05342 * 359.62112 * 4 2 1 6 6 C 1.53491 * 87.98331 * 207.38613 * 5 4 2 7 7 C 1.50703 * 114.20368 * 220.34653 * 6 5 4 8 8 O 1.34928 * 119.99659 * 178.59947 * 7 6 5 9 9 N 1.29032 * 120.00378 * 358.59656 * 7 6 5 10 10 C 1.46500 * 120.00385 * 186.71158 * 9 7 6 11 11 C 1.53007 * 109.46883 * 246.23622 * 10 9 7 12 12 C 1.53039 * 109.46073 * 295.06735 * 11 10 9 13 13 C 1.53197 * 109.30885 * 178.61235 * 12 11 10 14 14 N 1.46928 * 108.77583 * 54.63673 * 13 12 11 15 15 C 1.36930 * 120.62903 * 126.40960 * 14 13 12 16 16 H 1.08004 * 120.00435 * 325.53497 * 15 14 13 17 17 C 1.38819 * 119.99975 * 145.54133 * 15 14 13 18 18 N 1.31618 * 119.99542 * 333.75350 * 17 15 14 19 19 Si 1.86799 * 120.00126 * 153.75313 * 17 15 14 20 20 H 1.48508 * 109.46930 * 59.99790 * 19 17 15 21 21 H 1.48492 * 109.47110 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47393 * 300.00043 * 19 17 15 23 23 C 1.46923 * 118.73776 * 306.39316 * 14 13 12 24 24 C 1.53035 * 109.45851 * 174.99508 * 11 10 9 25 25 C 1.47066 * 136.06235 * 180.02562 * 4 2 1 26 26 H 1.08999 * 109.47605 * 239.99698 * 1 2 3 27 27 H 1.09004 * 109.47142 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47576 * 119.99369 * 1 2 3 29 29 H 1.09003 * 113.46657 * 322.16209 * 5 4 2 30 30 H 1.08993 * 113.46977 * 92.60013 * 5 4 2 31 31 H 1.09004 * 114.21141 * 87.52011 * 6 5 4 32 32 H 0.96707 * 113.99491 * 185.59622 * 8 7 6 33 33 H 1.08994 * 109.47273 * 6.23269 * 10 9 7 34 34 H 1.08998 * 109.47179 * 126.24139 * 10 9 7 35 35 H 1.09002 * 109.45546 * 55.02853 * 11 10 9 36 36 H 1.08995 * 109.49410 * 298.56350 * 12 11 10 37 37 H 1.08999 * 109.49661 * 58.66145 * 12 11 10 38 38 H 1.08994 * 109.58505 * 294.84798 * 13 12 11 39 39 H 1.09000 * 109.70112 * 174.49019 * 13 12 11 40 40 H 0.97003 * 119.99600 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.58145 * 293.81521 * 23 14 13 42 42 H 1.08999 * 109.70335 * 173.46945 * 23 14 13 43 43 H 1.08997 * 109.50312 * 301.34235 * 24 11 10 44 44 H 1.09004 * 109.49683 * 61.40894 * 24 11 10 45 45 H 1.08995 * 113.46431 * 267.39927 * 25 4 2 46 46 H 1.09001 * 113.46279 * 37.83058 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 0.0056 6 6 3.1654 -2.8683 0.7043 7 6 3.8767 -4.1034 0.2146 8 8 5.0781 -4.4387 0.7293 9 7 3.3370 -4.8401 -0.6969 10 6 3.9543 -6.1157 -1.0684 11 6 4.4638 -6.0353 -2.5089 12 6 3.2775 -5.8654 -3.4606 13 6 3.7939 -5.7504 -4.8983 14 7 4.6405 -6.9150 -5.1912 15 6 4.3946 -7.6984 -6.2870 16 1 3.3791 -7.8640 -6.6156 17 6 5.4504 -8.2799 -6.9756 18 7 6.6418 -7.7213 -6.9471 19 14 5.1801 -9.8552 -7.9425 20 1 4.1531 -9.6232 -8.9898 21 1 6.4548 -10.2679 -8.5827 22 1 4.7173 -10.9266 -7.0242 23 6 5.7563 -7.2227 -4.2862 24 6 5.2180 -7.3210 -2.8554 25 6 3.5941 -1.5740 -0.0002 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8901 29 1 0.9591 -2.8237 0.6246 30 1 1.7602 -3.0296 -0.9915 31 1 3.1261 -2.7934 1.7911 32 1 5.4946 -5.1957 0.2949 33 1 4.7888 -6.3242 -0.3990 34 1 3.2160 -6.9136 -0.9882 35 1 5.1350 -5.1823 -2.6094 36 1 2.6187 -6.7298 -3.3786 37 1 2.7272 -4.9617 -3.1983 38 1 4.3793 -4.8372 -5.0044 39 1 2.9521 -5.7274 -5.5904 40 1 7.3796 -8.1279 -7.4280 41 1 6.5018 -6.4295 -4.3425 42 1 6.2103 -8.1716 -4.5719 43 1 6.0488 -7.4536 -2.1624 44 1 4.5410 -8.1719 -2.7786 45 1 3.9990 -1.7370 -0.9990 46 1 4.2294 -0.9356 0.6137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328843507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:42 Heat of formation + Delta-G solvation = -27.268738 kcal Electronic energy + Delta-G solvation = -25749.066607 eV Core-core repulsion = 22061.027265 eV Total energy + Delta-G solvation = -3688.039341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69630 -40.38152 -39.23957 -38.65382 -35.89593 -34.26222 -32.81808 -32.00921 -31.47992 -29.92739 -28.17895 -26.93913 -26.08017 -24.43056 -23.75601 -22.56942 -21.03707 -20.70767 -19.85165 -18.70983 -18.62055 -17.99542 -17.59600 -16.82196 -16.77808 -16.14617 -16.02307 -15.61290 -15.38665 -15.22098 -14.75588 -14.63878 -14.32095 -14.11214 -13.95930 -13.85813 -13.57726 -13.39776 -13.22866 -13.08143 -13.01781 -12.83873 -12.67373 -12.55489 -12.38546 -12.05630 -11.91437 -11.82453 -11.75076 -11.24922 -11.14515 -11.02113 -10.53467 -10.48354 -10.07598 -9.79261 -8.65942 -7.92025 -5.39538 1.20656 1.44498 1.47001 1.54589 1.55418 1.77472 2.49413 2.55584 2.97601 3.17502 3.45096 3.62856 3.70609 3.85927 3.94540 4.05163 4.13092 4.17477 4.36617 4.45060 4.49634 4.54345 4.59845 4.62155 4.65197 4.71500 4.74414 4.78312 4.83054 4.91329 5.01117 5.08311 5.11279 5.18638 5.26234 5.31021 5.33358 5.37812 5.44411 5.66830 5.70043 5.71576 6.38356 6.67379 7.06907 7.12161 7.21643 7.82742 8.40482 9.11074 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002693 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424600 B =10393.622467 C =11045.733392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.532 3.468 3 O -0.604 6.604 4 N -0.652 5.652 5 C 0.130 3.870 6 C -0.047 4.047 7 C 0.349 3.651 8 O -0.527 6.527 9 N -0.582 5.582 10 C 0.056 3.944 11 C -0.064 4.064 12 C -0.099 4.099 13 C 0.139 3.861 14 N -0.607 5.607 15 C -0.278 4.278 16 H 0.058 0.942 17 C -0.037 4.037 18 N -0.925 5.925 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.179 3.821 24 C -0.122 4.122 25 C 0.109 3.891 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.407 0.593 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.076 0.924 38 H -0.001 1.001 39 H 0.046 0.954 40 H 0.252 0.748 41 H -0.007 1.007 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 7.193 20.664 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.325 3.675 3 O -0.486 6.486 4 N -0.387 5.387 5 C 0.008 3.992 6 C -0.067 4.067 7 C 0.122 3.878 8 O -0.327 6.327 9 N -0.319 5.319 10 C -0.072 4.072 11 C -0.084 4.084 12 C -0.138 4.138 13 C 0.014 3.986 14 N -0.331 5.331 15 C -0.408 4.408 16 H 0.076 0.924 17 C -0.235 4.235 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.201 1.201 23 C 0.053 3.947 24 C -0.161 4.161 25 C -0.016 4.016 26 H 0.133 0.867 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.011 0.989 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.149 8.292 20.442 24.717 hybrid contribution 1.647 -1.440 -1.239 2.514 sum -9.502 6.853 19.203 22.494 Atomic orbital electron populations 1.21882 0.87370 1.06072 1.06420 1.21250 0.91858 0.80519 0.73834 1.90711 1.72309 1.32354 1.53212 1.49722 1.09554 1.06713 1.72741 1.23061 0.97029 0.76387 1.02728 1.21662 0.95753 0.86713 1.02551 1.24290 0.82548 0.93961 0.86978 1.84760 1.32819 1.53460 1.61635 1.72288 1.35975 1.07601 1.16040 1.22029 0.98650 0.91834 0.94707 1.20948 0.96483 0.96929 0.93991 1.21714 0.96898 1.01518 0.93693 1.21091 0.93245 0.88346 0.95969 1.44271 1.33877 1.28901 1.26033 1.19307 0.91783 1.23992 1.05761 0.92418 1.25883 0.96312 1.02743 0.98564 1.70282 1.02432 1.38627 1.45486 0.85486 0.76700 0.80670 0.78511 1.19934 1.21935 1.20125 1.20491 0.88670 0.96928 0.88588 1.22016 0.99828 0.97588 0.96676 1.22953 0.85022 0.92729 1.00874 0.86668 0.89016 0.87636 0.86511 0.87959 0.83092 0.73284 0.92628 0.88903 0.93337 0.92776 0.90557 0.98289 0.93588 0.93959 0.98920 0.94787 0.90654 0.92300 0.90099 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.15 71.23 0.72 -0.91 16 2 C 0.53 10.86 8.19 87.66 0.72 11.58 16 3 O -0.60 -18.70 17.86 -3.03 -0.05 -18.75 16 4 N -0.65 -10.95 3.69 -858.43 -3.17 -14.12 16 5 C 0.13 1.46 7.74 83.17 0.64 2.10 16 6 C -0.05 -0.57 4.61 -11.22 -0.05 -0.62 16 7 C 0.35 5.66 7.53 88.52 0.67 6.33 16 8 O -0.53 -8.53 13.52 -81.97 -1.11 -9.63 16 9 N -0.58 -11.20 8.64 -454.03 -3.92 -15.13 16 10 C 0.06 1.17 5.52 86.38 0.48 1.64 16 11 C -0.06 -1.87 2.36 -10.77 -0.03 -1.89 16 12 C -0.10 -3.25 5.26 30.67 0.16 -3.09 16 13 C 0.14 5.97 6.52 86.36 0.56 6.53 16 14 N -0.61 -30.92 2.94 -699.10 -2.06 -32.98 16 15 C -0.28 -15.63 9.43 84.04 0.79 -14.84 16 16 H 0.06 3.20 7.95 -2.91 -0.02 3.18 16 17 C -0.04 -2.12 4.61 84.86 0.39 -1.73 16 18 N -0.92 -55.67 12.33 21.65 0.27 -55.40 16 19 Si 0.96 44.79 29.63 68.60 2.03 46.82 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.18 8.43 5.41 86.36 0.47 8.89 16 24 C -0.12 -4.08 5.36 30.67 0.16 -3.92 16 25 C 0.11 1.82 8.18 83.17 0.68 2.50 16 26 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 1.00 8.12 -2.38 -0.02 0.98 16 28 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.44 7.36 -2.39 -0.02 1.43 16 31 H 0.15 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.41 5.27 5.98 -74.05 -0.44 4.83 16 33 H 0.06 0.89 5.52 -2.39 -0.01 0.87 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.24 7.72 -2.39 -0.02 2.22 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.05 1.98 7.93 -2.39 -0.02 1.97 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.03 1.78 6.84 -2.39 -0.02 1.76 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.93 372.33 -1.11 -77.04 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.53 Total: 9.58 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.37 Total: 12.57 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -8.88 Total: -117.62 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.16 Total: -28.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.93 -1.11 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328843507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.775 kcal (2) G-P(sol) polarization free energy of solvation -75.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds