Wall clock time and date at job start Fri Apr 10 2020 18:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47759 * 2 1 4 4 C 1.50706 * 109.47377 * 119.99958 * 2 1 3 5 5 O 1.21283 * 119.99750 * 96.66353 * 4 2 1 6 6 N 1.34773 * 120.00170 * 276.66912 * 4 2 1 7 7 C 1.46509 * 119.99997 * 359.97438 * 6 4 2 8 8 C 1.46494 * 120.00345 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.47192 * 270.00070 * 8 6 4 10 10 H 1.08005 * 119.99646 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00201 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99937 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00254 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46912 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47328 * 120.00003 * 13 11 9 16 16 H 1.48491 * 109.47469 * 240.00497 * 13 11 9 17 17 N 1.46901 * 109.47234 * 240.00161 * 2 1 3 18 18 C 1.47185 * 111.00049 * 54.25466 * 17 2 1 19 19 C 1.52983 * 108.72790 * 54.37201 * 18 17 2 20 20 N 1.46003 * 110.04362 * 50.29183 * 19 18 17 21 21 C 1.46506 * 118.53792 * 161.86435 * 20 19 18 22 22 C 1.53000 * 117.49858 * 6.89084 * 21 20 19 23 23 C 1.52999 * 60.00197 * 252.51717 * 22 21 20 24 24 C 1.33716 * 122.93053 * 341.83696 * 20 19 18 25 25 O 1.21282 * 118.62752 * 181.68813 * 24 20 19 26 26 C 1.46903 * 111.00126 * 177.14965 * 17 2 1 27 27 H 1.09009 * 109.47179 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.47400 * 59.99498 * 1 2 3 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46794 * 90.00059 * 7 6 4 31 31 H 1.08995 * 109.46947 * 210.00135 * 7 6 4 32 32 H 1.09000 * 109.46952 * 330.00014 * 7 6 4 33 33 H 1.09006 * 109.46748 * 29.99801 * 8 6 4 34 34 H 1.08998 * 109.47672 * 149.99690 * 8 6 4 35 35 H 0.96994 * 120.00054 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.59576 * 174.14060 * 18 17 2 37 37 H 1.08999 * 109.59874 * 294.59881 * 18 17 2 38 38 H 1.09004 * 109.37917 * 170.46850 * 19 18 17 39 39 H 1.09004 * 109.37523 * 290.22666 * 19 18 17 40 40 H 1.08994 * 115.55110 * 152.60501 * 21 20 19 41 41 H 1.09007 * 117.49764 * 0.02562 * 22 21 20 42 42 H 1.08997 * 117.49688 * 145.01776 * 22 21 20 43 43 H 1.09004 * 117.49680 * 252.51225 * 23 22 21 44 44 H 1.08996 * 117.50093 * 107.49325 * 23 22 21 45 45 H 1.09003 * 109.38836 * 47.08644 * 26 17 2 46 46 H 1.09001 * 109.38587 * 166.77594 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3494 -1.8794 1.1688 6 7 2.1292 -0.0467 2.3995 7 6 1.7466 1.3656 2.4739 8 6 2.6170 -0.7374 3.5957 9 6 1.4536 -1.3519 4.3306 10 1 0.4510 -1.2388 3.9452 11 6 1.6691 -2.0584 5.4948 12 7 2.8899 -2.1956 5.9643 13 14 0.2270 -2.8194 6.4061 14 1 -1.0320 -2.5225 5.6764 15 1 0.4148 -4.2901 6.4899 16 1 0.1514 -2.2512 7.7759 17 7 2.0196 -0.6925 -1.1995 18 6 1.4386 -0.1090 -2.4195 19 6 1.7167 1.3953 -2.4251 20 7 3.1333 1.6433 -2.1737 21 6 3.6885 2.9518 -2.5285 22 6 2.7096 4.0324 -2.9924 23 6 3.6438 3.3622 -4.0019 24 6 3.9466 0.7296 -1.6336 25 8 5.1041 1.0296 -1.4304 26 6 3.4865 -0.6533 -1.2680 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.6893 1.4426 2.7272 31 1 2.3410 1.8631 3.2402 32 1 1.9249 1.8416 1.5097 33 1 3.3165 -1.5206 3.3032 34 1 3.1221 -0.0239 4.2468 35 1 3.0415 -2.6923 6.7835 36 1 1.8941 -0.5682 -3.2970 37 1 0.3625 -0.2819 -2.4308 38 1 1.4435 1.8100 -3.3954 39 1 1.1235 1.8756 -1.6468 40 1 4.5507 3.2711 -1.9431 41 1 1.6525 3.7698 -3.0332 42 1 2.9276 5.0628 -2.7119 43 1 4.4765 3.9518 -4.3856 44 1 3.2014 2.6586 -4.7071 45 1 3.9016 -0.9281 -0.2982 46 1 3.8325 -1.3608 -2.0215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331411546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:08 Heat of formation + Delta-G solvation = -8.454239 kcal Electronic energy + Delta-G solvation = -27368.636006 eV Core-core repulsion = 23681.412523 eV Total energy + Delta-G solvation = -3687.223483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30153 -39.22335 -37.50703 -37.25699 -34.80898 -33.51140 -32.62428 -31.27328 -30.10118 -27.80403 -26.05702 -25.92273 -24.78180 -23.32061 -22.66546 -22.44102 -21.22328 -19.28524 -17.79680 -17.51607 -17.10989 -16.65646 -16.49727 -16.05653 -15.36782 -15.27293 -14.87286 -14.68423 -14.38092 -14.20100 -13.97040 -13.49361 -13.17312 -12.79679 -12.70053 -12.57152 -12.12780 -12.08212 -12.02513 -11.92866 -11.86364 -11.57251 -11.47391 -11.30924 -11.18588 -11.12967 -10.85344 -10.84050 -10.58152 -10.34426 -10.14140 -9.59678 -8.90122 -8.78485 -8.42451 -8.28485 -7.64258 -6.02733 -4.07428 2.42695 2.54671 3.30716 3.34543 3.38683 3.41589 3.51109 3.52469 4.04165 4.23008 4.38485 4.45662 4.52753 4.54422 4.69030 4.70837 4.82031 4.98920 5.06452 5.17971 5.22054 5.23830 5.31748 5.37332 5.46632 5.49603 5.58583 5.62057 5.69202 5.70176 5.71452 5.79772 5.94078 6.10730 6.17553 6.26480 6.64249 6.73474 7.08054 7.18577 7.44675 7.54189 7.93337 7.97911 8.24287 8.39765 8.91432 9.09624 9.57497 11.05458 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.003612 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.012257 B = 7749.599516 C = 7885.617117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.063 0.937 4 C 0.508 3.492 5 O -0.520 6.520 6 N -0.601 5.601 7 C 0.084 3.916 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.898 3.102 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.501 5.501 18 C 0.037 3.963 19 C 0.070 3.930 20 N -0.582 5.582 21 C 0.076 3.924 22 C -0.185 4.185 23 C -0.191 4.191 24 C 0.489 3.511 25 O -0.541 6.541 26 C 0.042 3.958 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 12.725 -20.008 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.058 4.058 3 H 0.080 0.920 4 C 0.293 3.707 5 O -0.395 6.395 6 N -0.334 5.334 7 C -0.060 4.060 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.224 5.224 18 C -0.092 4.092 19 C -0.054 4.054 20 N -0.315 5.315 21 C -0.029 4.029 22 C -0.223 4.223 23 C -0.230 4.230 24 C 0.277 3.723 25 O -0.417 6.417 26 C -0.089 4.089 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.909 11.613 -19.679 23.182 hybrid contribution -0.636 0.628 0.517 1.033 sum -4.545 12.241 -19.162 23.188 Atomic orbital electron populations 1.21803 0.91797 1.04012 1.02252 1.21880 0.97638 0.96144 0.90088 0.91967 1.19942 0.79538 0.87383 0.83852 1.90688 1.48558 1.15589 1.84686 1.48157 1.63957 1.10505 1.10743 1.21673 1.00493 0.82901 1.00930 1.19319 0.95338 0.92691 0.79957 1.21444 0.93694 1.33584 1.07559 0.92420 1.24943 0.95908 0.96055 0.97274 1.69944 1.19726 1.41606 1.22075 0.86440 0.82487 0.79144 0.79318 1.19815 1.20867 1.21017 1.62219 1.05444 1.53768 1.00970 1.22692 1.02619 0.90336 0.93543 1.22257 0.81427 0.99393 1.02314 1.47012 1.09539 1.12992 1.61967 1.21679 1.00096 0.84155 0.96930 1.23356 0.97226 0.97962 1.03719 1.23353 1.02666 1.03716 0.93230 1.21528 0.86035 0.88178 0.76571 1.90712 1.18163 1.79485 1.53317 1.22566 0.88340 0.91567 1.06421 0.91134 0.91890 0.90594 0.93041 0.91301 0.93031 0.93805 0.95011 0.92771 0.89311 0.87671 0.90107 0.90932 0.84899 0.88199 0.87785 0.88049 0.88647 0.85975 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.55 37.15 0.32 -1.39 16 2 C 0.05 0.79 1.07 -68.87 -0.07 0.71 16 3 H 0.06 0.85 4.06 -51.93 -0.21 0.64 16 4 C 0.51 10.49 5.81 -10.98 -0.06 10.43 16 5 O -0.52 -12.98 15.19 5.56 0.08 -12.90 16 6 N -0.60 -12.83 2.86 -182.95 -0.52 -13.35 16 7 C 0.08 1.36 9.82 59.85 0.59 1.95 16 8 C 0.25 6.51 5.20 -5.19 -0.03 6.49 16 9 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 13 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.50 -6.74 4.58 -229.50 -1.05 -7.79 16 18 C 0.04 0.32 5.44 -3.68 -0.02 0.30 16 19 C 0.07 0.57 4.45 -4.32 -0.02 0.55 16 20 N -0.58 -6.51 2.97 -166.99 -0.50 -7.01 16 21 C 0.08 0.76 6.07 -67.92 -0.41 0.35 16 22 C -0.18 -1.28 9.70 -26.73 -0.26 -1.54 16 23 C -0.19 -1.46 10.10 -26.73 -0.27 -1.73 16 24 C 0.49 7.19 6.88 -11.67 -0.08 7.11 16 25 O -0.54 -9.92 16.46 5.56 0.09 -9.83 16 26 C 0.04 0.61 5.57 -5.19 -0.03 0.59 16 27 H 0.07 0.86 7.40 -51.92 -0.38 0.48 16 28 H 0.06 0.53 5.75 -51.93 -0.30 0.23 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.77 7.88 -51.93 -0.41 0.37 16 31 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 32 H 0.05 0.69 5.88 -51.93 -0.31 0.38 16 33 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 34 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.09 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.11 0.75 6.56 -51.93 -0.34 0.41 16 38 H 0.08 0.48 6.69 -51.93 -0.35 0.13 16 39 H 0.07 0.57 6.23 -51.93 -0.32 0.24 16 40 H 0.13 1.57 7.51 -51.93 -0.39 1.18 16 41 H 0.10 0.59 6.55 -51.92 -0.34 0.25 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.69 8.01 -51.93 -0.42 0.28 16 45 H 0.12 2.23 6.27 -51.93 -0.33 1.90 16 46 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -35.67 358.48 -8.50 -44.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.95 Total: 0.25 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.77 Total: 10.22 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -1.33 Total: -54.24 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.18 Total: -22.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.67 -8.50 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331411546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.713 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds