Wall clock time and date at job start Fri Apr 10 2020 18:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47759 * 2 1 4 4 C 1.50706 * 109.47377 * 119.99958 * 2 1 3 5 5 O 1.21283 * 119.99750 * 96.66353 * 4 2 1 6 6 N 1.34773 * 120.00170 * 276.66912 * 4 2 1 7 7 C 1.46509 * 119.99997 * 359.97438 * 6 4 2 8 8 C 1.46494 * 120.00345 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.47192 * 270.00070 * 8 6 4 10 10 H 1.08005 * 119.99646 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00201 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99937 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00254 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46912 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47328 * 120.00003 * 13 11 9 16 16 H 1.48491 * 109.47469 * 240.00497 * 13 11 9 17 17 N 1.46901 * 109.47234 * 240.00161 * 2 1 3 18 18 C 1.47185 * 111.00049 * 54.25466 * 17 2 1 19 19 C 1.52983 * 108.72790 * 54.37201 * 18 17 2 20 20 N 1.46003 * 110.04362 * 50.29183 * 19 18 17 21 21 C 1.46506 * 118.53792 * 161.86435 * 20 19 18 22 22 C 1.53000 * 117.49858 * 6.89084 * 21 20 19 23 23 C 1.52999 * 60.00197 * 252.51717 * 22 21 20 24 24 C 1.33716 * 122.93053 * 341.83696 * 20 19 18 25 25 O 1.21282 * 118.62752 * 181.68813 * 24 20 19 26 26 C 1.46903 * 111.00126 * 177.14965 * 17 2 1 27 27 H 1.09009 * 109.47179 * 300.00053 * 1 2 3 28 28 H 1.09000 * 109.47400 * 59.99498 * 1 2 3 29 29 H 1.08996 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46794 * 90.00059 * 7 6 4 31 31 H 1.08995 * 109.46947 * 210.00135 * 7 6 4 32 32 H 1.09000 * 109.46952 * 330.00014 * 7 6 4 33 33 H 1.09006 * 109.46748 * 29.99801 * 8 6 4 34 34 H 1.08998 * 109.47672 * 149.99690 * 8 6 4 35 35 H 0.96994 * 120.00054 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.59576 * 174.14060 * 18 17 2 37 37 H 1.08999 * 109.59874 * 294.59881 * 18 17 2 38 38 H 1.09004 * 109.37917 * 170.46850 * 19 18 17 39 39 H 1.09004 * 109.37523 * 290.22666 * 19 18 17 40 40 H 1.08994 * 115.55110 * 152.60501 * 21 20 19 41 41 H 1.09007 * 117.49764 * 0.02562 * 22 21 20 42 42 H 1.08997 * 117.49688 * 145.01776 * 22 21 20 43 43 H 1.09004 * 117.49680 * 252.51225 * 23 22 21 44 44 H 1.08996 * 117.50093 * 107.49325 * 23 22 21 45 45 H 1.09003 * 109.38836 * 47.08644 * 26 17 2 46 46 H 1.09001 * 109.38587 * 166.77594 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3494 -1.8794 1.1688 6 7 2.1292 -0.0467 2.3995 7 6 1.7466 1.3656 2.4739 8 6 2.6170 -0.7374 3.5957 9 6 1.4536 -1.3519 4.3306 10 1 0.4510 -1.2388 3.9452 11 6 1.6691 -2.0584 5.4948 12 7 2.8899 -2.1956 5.9643 13 14 0.2270 -2.8194 6.4061 14 1 -1.0320 -2.5225 5.6764 15 1 0.4148 -4.2901 6.4899 16 1 0.1514 -2.2512 7.7759 17 7 2.0196 -0.6925 -1.1995 18 6 1.4386 -0.1090 -2.4195 19 6 1.7167 1.3953 -2.4251 20 7 3.1333 1.6433 -2.1737 21 6 3.6885 2.9518 -2.5285 22 6 2.7096 4.0324 -2.9924 23 6 3.6438 3.3622 -4.0019 24 6 3.9466 0.7296 -1.6336 25 8 5.1041 1.0296 -1.4304 26 6 3.4865 -0.6533 -1.2680 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.6893 1.4426 2.7272 31 1 2.3410 1.8631 3.2402 32 1 1.9249 1.8416 1.5097 33 1 3.3165 -1.5206 3.3032 34 1 3.1221 -0.0239 4.2468 35 1 3.0415 -2.6923 6.7835 36 1 1.8941 -0.5682 -3.2970 37 1 0.3625 -0.2819 -2.4308 38 1 1.4435 1.8100 -3.3954 39 1 1.1235 1.8756 -1.6468 40 1 4.5507 3.2711 -1.9431 41 1 1.6525 3.7698 -3.0332 42 1 2.9276 5.0628 -2.7119 43 1 4.4765 3.9518 -4.3856 44 1 3.2014 2.6586 -4.7071 45 1 3.9016 -0.9281 -0.2982 46 1 3.8325 -1.3608 -2.0215 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331411546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:07 Heat of formation + Delta-G solvation = -35.586725 kcal Electronic energy + Delta-G solvation = -27369.812559 eV Core-core repulsion = 23681.412523 eV Total energy + Delta-G solvation = -3688.400036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33924 -40.66242 -38.54814 -38.27543 -36.58853 -34.84571 -34.31296 -32.43727 -31.05620 -29.69413 -27.45012 -27.03024 -26.06228 -24.82087 -23.60768 -23.13862 -22.35998 -20.52410 -19.02060 -18.70175 -18.54663 -18.26511 -17.70391 -17.27207 -16.78291 -16.40624 -16.26864 -15.90663 -15.76681 -15.47525 -15.06020 -14.76434 -14.20167 -14.10790 -13.95099 -13.80884 -13.53741 -13.42606 -13.30037 -13.11591 -13.02920 -12.79602 -12.62923 -12.59883 -12.48816 -12.37280 -12.22260 -12.16064 -11.87689 -11.69429 -11.59709 -11.38618 -10.65861 -10.50228 -9.63107 -9.45241 -9.34009 -8.22696 -6.38024 1.32657 1.36545 1.39445 1.51310 1.66579 1.80288 2.17739 2.40406 2.76739 2.88629 3.06776 3.35051 3.54820 3.69850 3.74243 3.86978 3.91800 3.97447 4.02716 4.12246 4.28577 4.34517 4.37545 4.53669 4.57005 4.64207 4.72403 4.73821 4.76430 4.82966 4.88478 4.94395 4.97452 5.03158 5.18341 5.19005 5.26890 5.38363 5.53885 5.61833 5.79179 5.86934 6.04073 6.23664 6.68736 6.75852 6.93183 7.27748 7.47270 8.85026 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.003612 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.012257 B = 7749.599516 C = 7885.617117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 H 0.076 0.924 4 C 0.496 3.504 5 O -0.577 6.577 6 N -0.611 5.611 7 C 0.081 3.919 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.057 0.943 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.270 1.270 17 N -0.515 5.515 18 C 0.035 3.965 19 C 0.064 3.936 20 N -0.570 5.570 21 C 0.036 3.964 22 C -0.155 4.155 23 C -0.181 4.181 24 C 0.487 3.513 25 O -0.593 6.593 26 C 0.048 3.952 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.085 0.915 33 H -0.007 1.007 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 14.910 -22.291 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.039 4.039 3 H 0.094 0.906 4 C 0.284 3.716 5 O -0.456 6.456 6 N -0.343 5.343 7 C -0.061 4.061 8 C 0.139 3.861 9 C -0.576 4.576 10 H 0.075 0.925 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.796 3.204 14 H -0.187 1.187 15 H -0.209 1.209 16 H -0.195 1.195 17 N -0.239 5.239 18 C -0.092 4.092 19 C -0.058 4.058 20 N -0.301 5.301 21 C -0.068 4.068 22 C -0.192 4.192 23 C -0.219 4.219 24 C 0.275 3.725 25 O -0.473 6.473 26 C -0.084 4.084 27 H 0.090 0.910 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.012 0.988 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.093 0.907 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.767 13.873 -22.010 27.151 hybrid contribution 0.598 -0.022 1.156 1.302 sum -7.169 13.851 -20.854 26.041 Atomic orbital electron populations 1.21868 0.89056 1.03658 1.04845 1.21738 0.99305 0.95430 0.87442 0.90630 1.21160 0.78123 0.87118 0.85224 1.90644 1.50783 1.18430 1.85717 1.48185 1.63938 1.12522 1.09678 1.21928 1.01433 0.79843 1.02940 1.18757 0.94199 0.91463 0.81678 1.21697 0.93887 1.34056 1.07999 0.92462 1.25934 0.98922 0.96391 0.98241 1.70078 1.22072 1.42312 1.22664 0.85302 0.78926 0.77833 0.78341 1.18664 1.20868 1.19478 1.62203 1.04350 1.54966 1.02400 1.22943 1.04043 0.90802 0.91416 1.22570 0.79323 0.99007 1.04900 1.47009 1.10468 1.12514 1.60076 1.21726 1.01452 0.84731 0.98917 1.23488 0.97599 0.97263 1.00853 1.23422 1.03178 1.03565 0.91777 1.21438 0.85716 0.88587 0.76806 1.90681 1.20399 1.80356 1.55909 1.22331 0.89559 0.92290 1.04184 0.90991 0.86818 0.92455 0.91211 0.91424 0.89706 0.98845 0.96281 0.92443 0.88106 0.84741 0.86373 0.89389 0.87901 0.86000 0.86696 0.87710 0.87611 0.90719 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.55 71.98 0.62 -2.21 16 2 C 0.07 2.00 1.07 44.17 0.05 2.05 16 3 H 0.08 1.89 4.06 -2.38 -0.01 1.88 16 4 C 0.50 21.22 5.81 87.66 0.51 21.73 16 5 O -0.58 -30.79 15.19 -3.04 -0.05 -30.83 16 6 N -0.61 -27.03 2.86 -851.11 -2.43 -29.46 16 7 C 0.08 2.54 9.82 127.77 1.25 3.79 16 8 C 0.26 14.67 5.20 85.64 0.45 15.11 16 9 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 10 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 13 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 14 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 N -0.51 -13.26 4.58 -880.01 -4.03 -17.29 16 18 C 0.03 0.47 5.44 86.24 0.47 0.94 16 19 C 0.06 0.72 4.45 86.47 0.38 1.11 16 20 N -0.57 -11.53 2.97 -801.23 -2.38 -13.91 16 21 C 0.04 0.66 6.07 44.99 0.27 0.93 16 22 C -0.15 -1.46 9.70 30.59 0.30 -1.16 16 23 C -0.18 -2.17 10.10 30.60 0.31 -1.86 16 24 C 0.49 14.55 6.88 87.68 0.60 15.15 16 25 O -0.59 -23.16 16.46 -3.04 -0.05 -23.21 16 26 C 0.05 1.46 5.57 85.42 0.48 1.94 16 27 H 0.07 1.50 7.40 -2.38 -0.02 1.48 16 28 H 0.11 1.19 5.75 -2.39 -0.01 1.18 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 31 H 0.07 2.13 7.89 -2.39 -0.02 2.11 16 32 H 0.08 2.07 5.88 -2.39 -0.01 2.06 16 33 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 34 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.10 1.20 8.08 -2.38 -0.02 1.18 16 37 H 0.13 1.11 6.56 -2.39 -0.02 1.09 16 38 H 0.12 0.58 6.69 -2.38 -0.02 0.56 16 39 H 0.09 0.81 6.23 -2.39 -0.01 0.79 16 40 H 0.10 2.50 7.51 -2.39 -0.02 2.48 16 41 H 0.12 0.65 6.55 -2.38 -0.02 0.64 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 1.08 8.01 -2.39 -0.02 1.06 16 45 H 0.07 3.02 6.27 -2.39 -0.01 3.00 16 46 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -86.43 358.48 0.75 -85.69 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.99 Total: 12.25 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 6.39 Total: 26.86 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -8.56 Total: -118.21 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -86.43 0.75 -85.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331411546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.099 kcal (2) G-P(sol) polarization free energy of solvation -86.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds