Wall clock time and date at job start Fri Apr 10 2020 18:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47169 * 2 1 4 4 C 1.46759 * 124.34708 * 90.00120 * 3 2 1 5 5 C 1.54484 * 105.47111 * 162.96009 * 4 3 2 6 6 H 1.08996 * 110.97085 * 267.25987 * 5 4 3 7 7 N 1.46504 * 110.96790 * 143.53614 * 5 4 3 8 8 C 1.34774 * 120.00012 * 158.08875 * 7 5 4 9 9 O 1.21586 * 120.00310 * 5.07963 * 8 7 5 10 10 N 1.34779 * 119.99953 * 185.07519 * 8 7 5 11 11 C 1.46932 * 120.63053 * 174.96836 * 10 8 7 12 12 C 1.53193 * 108.77527 * 233.63203 * 11 10 8 13 13 C 1.53038 * 109.31080 * 305.36561 * 12 11 10 14 14 C 1.50698 * 109.46108 * 181.38626 * 13 12 11 15 15 H 1.08003 * 119.99664 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00355 * 180.27096 * 14 13 12 17 17 N 1.31516 * 120.00129 * 359.72636 * 16 14 13 18 18 Si 1.86800 * 120.00415 * 179.72269 * 16 14 13 19 19 H 1.48497 * 109.46929 * 60.00091 * 18 16 14 20 20 H 1.48492 * 109.47507 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47212 * 300.00486 * 18 16 14 22 22 C 1.53037 * 109.53942 * 61.36406 * 13 12 11 23 23 C 1.46921 * 120.63214 * 354.98731 * 10 8 7 24 24 C 1.54626 * 101.79829 * 25.40084 * 5 4 3 25 25 C 1.34424 * 124.35121 * 269.97635 * 3 2 1 26 26 O 1.21284 * 124.93900 * 0.41421 * 25 3 2 27 27 H 1.09002 * 109.46968 * 299.99884 * 1 2 3 28 28 H 1.09004 * 109.47358 * 59.99489 * 1 2 3 29 29 H 1.08993 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46458 * 240.00249 * 2 1 3 31 31 H 1.08991 * 109.47145 * 120.00183 * 2 1 3 32 32 H 1.09004 * 110.24631 * 43.96630 * 4 3 2 33 33 H 1.08996 * 110.32387 * 281.99886 * 4 3 2 34 34 H 0.96996 * 120.00082 * 338.08839 * 7 5 4 35 35 H 1.08996 * 109.58846 * 113.84223 * 11 10 8 36 36 H 1.08997 * 109.58575 * 353.41869 * 11 10 8 37 37 H 1.08995 * 109.49640 * 185.41404 * 12 11 10 38 38 H 1.08998 * 109.52296 * 65.32735 * 12 11 10 39 39 H 1.09004 * 109.46176 * 301.35847 * 13 12 11 40 40 H 0.96997 * 120.00689 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50040 * 58.59120 * 22 13 12 42 42 H 1.09001 * 109.49863 * 178.68366 * 22 13 12 43 43 H 1.08993 * 109.59266 * 246.15490 * 23 10 8 44 44 H 1.09002 * 109.58767 * 6.58415 * 23 10 8 45 45 H 1.08997 * 110.48853 * 93.89767 * 24 5 4 46 46 H 1.09005 * 110.48622 * 216.54050 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1750 3.3437 0.7488 6 1 4.2336 3.1028 0.8457 7 7 2.8476 4.5636 1.4910 8 6 3.7480 5.5629 1.5759 9 8 4.7945 5.4922 0.9609 10 7 3.4883 6.6407 2.3423 11 6 4.5033 7.6860 2.5327 12 6 4.7079 7.9067 4.0348 13 6 3.3592 8.2135 4.6896 14 6 3.5613 8.4648 6.1617 15 1 4.5523 8.4107 6.5876 16 6 2.4805 8.7577 6.9659 17 7 1.2736 8.8232 6.4474 18 14 2.7300 9.0616 8.7920 19 1 3.6418 10.2183 8.9812 20 1 1.4207 9.3535 9.4288 21 1 3.3260 7.8540 9.4179 22 6 2.4158 7.0233 4.5004 23 6 2.1852 6.7926 3.0036 24 6 2.7712 3.4755 -0.7380 25 6 2.2716 2.0962 -1.1098 26 8 2.1223 1.6941 -2.2442 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.8321 1.5529 1.9384 33 1 1.3645 2.5311 1.6442 34 1 1.9829 4.6522 1.9214 35 1 4.1645 8.6129 2.0700 36 1 5.4425 7.3704 2.0785 37 1 5.3868 8.7451 4.1901 38 1 5.1325 7.0072 4.4806 39 1 2.9236 9.0989 4.2265 40 1 0.5131 9.0289 7.0132 41 1 2.8617 6.1319 4.9415 42 1 1.4634 7.2331 4.9871 43 1 1.6574 7.6467 2.5793 44 1 1.5949 5.8876 2.8601 45 1 1.9768 4.2128 -0.8537 46 1 3.6351 3.7455 -1.3455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334717215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:18 Heat of formation + Delta-G solvation = -60.721377 kcal Electronic energy + Delta-G solvation = -26139.788832 eV Core-core repulsion = 22450.298876 eV Total energy + Delta-G solvation = -3689.489957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90766 -39.80519 -37.26913 -36.56295 -35.00310 -33.62799 -32.62382 -31.05922 -30.09557 -29.15870 -27.68820 -26.11167 -23.82950 -23.16637 -22.50021 -21.73214 -20.38870 -19.71865 -18.93600 -17.81898 -17.08823 -16.71433 -16.28724 -15.95238 -15.40462 -15.12061 -14.65083 -14.36306 -14.12278 -13.94883 -13.80298 -13.77318 -13.40255 -13.18038 -12.79340 -12.68639 -12.65740 -12.47912 -12.29061 -11.95046 -11.67961 -11.46318 -11.42559 -11.30926 -10.96802 -10.70999 -10.44021 -10.25387 -10.14140 -9.84459 -9.61742 -9.23902 -9.11162 -9.06302 -8.99534 -8.42514 -7.98982 -6.08139 -4.14245 2.36973 2.53773 2.91326 3.26046 3.31071 3.34104 3.40533 3.98019 4.15925 4.28961 4.36646 4.62529 4.68769 4.76741 4.87288 5.02409 5.14449 5.21031 5.25877 5.36394 5.45501 5.50289 5.59786 5.71435 5.76260 5.82669 5.88941 6.01791 6.12491 6.19790 6.22234 6.40914 6.46491 6.61835 6.77027 6.80480 6.93184 7.06678 7.14884 7.34821 7.61501 7.86774 7.92254 7.97895 8.18388 8.35227 8.81287 8.89053 9.51091 10.97212 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.002914 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.317229 B = 9605.615254 C =10482.213666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.619 5.619 4 C 0.097 3.903 5 C 0.159 3.841 6 H 0.111 0.889 7 N -0.742 5.742 8 C 0.708 3.292 9 O -0.600 6.600 10 N -0.616 5.616 11 C 0.130 3.870 12 C -0.124 4.124 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.124 4.124 23 C 0.110 3.890 24 C -0.169 4.169 25 C 0.522 3.478 26 O -0.532 6.532 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.039 0.961 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.108 0.892 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -13.628 -9.096 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.027 4.027 5 C 0.052 3.948 6 H 0.129 0.871 7 N -0.401 5.401 8 C 0.410 3.590 9 O -0.479 6.479 10 N -0.352 5.352 11 C 0.007 3.993 12 C -0.163 4.163 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.162 4.162 23 C -0.013 4.013 24 C -0.210 4.210 25 C 0.310 3.690 26 O -0.408 6.408 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.599 -13.913 -10.054 17.240 hybrid contribution -0.563 0.226 1.451 1.573 sum -2.162 -13.687 -8.603 16.310 Atomic orbital electron populations 1.22167 0.95685 1.02424 1.02598 1.21367 0.94464 0.80908 1.03268 1.48323 1.66256 1.13909 1.06974 1.22313 0.99878 0.92871 0.87632 1.21458 1.00501 0.83418 0.89430 0.87131 1.45186 1.19330 1.16730 1.58838 1.15788 0.83209 0.79994 0.80007 1.90873 1.26468 1.80507 1.50081 1.47432 1.16726 1.21333 1.49714 1.21594 0.90899 0.88742 0.98035 1.22031 1.00881 1.00706 0.92654 1.18612 0.89503 0.93637 0.95154 1.21177 0.93522 1.47171 0.93153 0.92750 1.24950 0.95281 0.95210 0.98487 1.69815 0.98557 1.49263 1.35519 0.86679 0.77262 0.78769 0.85416 1.20289 1.21328 1.20359 1.22024 1.04649 0.99248 0.90316 1.21918 0.82942 0.99782 0.96649 1.22900 1.04247 0.95429 0.98437 1.20939 0.76329 0.87441 0.84292 1.90717 1.53687 1.75273 1.21144 0.92261 0.92219 0.91365 0.89930 0.90172 0.89241 0.90413 0.76275 0.92366 0.90248 0.92071 0.92971 0.95446 0.92924 0.94236 0.87810 0.91860 0.92562 0.87385 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.12 0.90 6.65 -4.04 -0.03 0.88 16 3 N -0.62 -5.67 2.93 -172.39 -0.51 -6.18 16 4 C 0.10 0.74 7.07 -3.12 -0.02 0.71 16 5 C 0.16 1.62 3.44 -66.29 -0.23 1.39 16 6 H 0.11 1.25 7.71 -51.93 -0.40 0.85 16 7 N -0.74 -8.77 5.08 -57.08 -0.29 -9.06 16 8 C 0.71 11.42 8.29 -86.92 -0.72 10.70 16 9 O -0.60 -11.45 15.52 5.29 0.08 -11.36 16 10 N -0.62 -10.28 2.97 -178.50 -0.53 -10.81 16 11 C 0.13 2.26 6.42 -3.71 -0.02 2.24 16 12 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 13 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 14 C -0.51 -13.16 8.56 -34.44 -0.29 -13.45 16 15 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -23.60 11.30 55.43 0.63 -22.98 16 18 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 C -0.12 -2.53 5.15 -26.61 -0.14 -2.67 16 23 C 0.11 1.77 6.43 -3.71 -0.02 1.74 16 24 C -0.17 -1.82 6.60 -26.72 -0.18 -2.00 16 25 C 0.52 6.26 8.02 -10.83 -0.09 6.17 16 26 O -0.53 -8.34 17.59 5.55 0.10 -8.24 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.51 7.78 -51.93 -0.40 0.10 16 34 H 0.40 4.02 5.85 -40.82 -0.24 3.78 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.39 7.03 -51.93 -0.37 1.02 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 2.39 6.02 -51.93 -0.31 2.07 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.72 5.57 -51.93 -0.29 0.44 16 45 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 46 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -31.00 365.52 -9.27 -40.27 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.46 Total: 2.82 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.79 Total: 4.79 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.70 Total: -49.03 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.18 Total: -19.61 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.00 -9.27 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334717215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.451 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds