Wall clock time and date at job start Fri Apr 10 2020 18:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47169 * 2 1 4 4 C 1.46759 * 124.34708 * 90.00120 * 3 2 1 5 5 C 1.54484 * 105.47111 * 162.96009 * 4 3 2 6 6 H 1.08996 * 110.97085 * 267.25987 * 5 4 3 7 7 N 1.46504 * 110.96790 * 143.53614 * 5 4 3 8 8 C 1.34774 * 120.00012 * 158.08875 * 7 5 4 9 9 O 1.21586 * 120.00310 * 5.07963 * 8 7 5 10 10 N 1.34779 * 119.99953 * 185.07519 * 8 7 5 11 11 C 1.46932 * 120.63053 * 174.96836 * 10 8 7 12 12 C 1.53193 * 108.77527 * 233.63203 * 11 10 8 13 13 C 1.53038 * 109.31080 * 305.36561 * 12 11 10 14 14 C 1.50698 * 109.46108 * 181.38626 * 13 12 11 15 15 H 1.08003 * 119.99664 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00355 * 180.27096 * 14 13 12 17 17 N 1.31516 * 120.00129 * 359.72636 * 16 14 13 18 18 Si 1.86800 * 120.00415 * 179.72269 * 16 14 13 19 19 H 1.48497 * 109.46929 * 60.00091 * 18 16 14 20 20 H 1.48492 * 109.47507 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47212 * 300.00486 * 18 16 14 22 22 C 1.53037 * 109.53942 * 61.36406 * 13 12 11 23 23 C 1.46921 * 120.63214 * 354.98731 * 10 8 7 24 24 C 1.54626 * 101.79829 * 25.40084 * 5 4 3 25 25 C 1.34424 * 124.35121 * 269.97635 * 3 2 1 26 26 O 1.21284 * 124.93900 * 0.41421 * 25 3 2 27 27 H 1.09002 * 109.46968 * 299.99884 * 1 2 3 28 28 H 1.09004 * 109.47358 * 59.99489 * 1 2 3 29 29 H 1.08993 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46458 * 240.00249 * 2 1 3 31 31 H 1.08991 * 109.47145 * 120.00183 * 2 1 3 32 32 H 1.09004 * 110.24631 * 43.96630 * 4 3 2 33 33 H 1.08996 * 110.32387 * 281.99886 * 4 3 2 34 34 H 0.96996 * 120.00082 * 338.08839 * 7 5 4 35 35 H 1.08996 * 109.58846 * 113.84223 * 11 10 8 36 36 H 1.08997 * 109.58575 * 353.41869 * 11 10 8 37 37 H 1.08995 * 109.49640 * 185.41404 * 12 11 10 38 38 H 1.08998 * 109.52296 * 65.32735 * 12 11 10 39 39 H 1.09004 * 109.46176 * 301.35847 * 13 12 11 40 40 H 0.96997 * 120.00689 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.50040 * 58.59120 * 22 13 12 42 42 H 1.09001 * 109.49863 * 178.68366 * 22 13 12 43 43 H 1.08993 * 109.59266 * 246.15490 * 23 10 8 44 44 H 1.09002 * 109.58767 * 6.58415 * 23 10 8 45 45 H 1.08997 * 110.48853 * 93.89767 * 24 5 4 46 46 H 1.09005 * 110.48622 * 216.54050 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1619 1.2117 5 6 3.1750 3.3437 0.7488 6 1 4.2336 3.1028 0.8457 7 7 2.8476 4.5636 1.4910 8 6 3.7480 5.5629 1.5759 9 8 4.7945 5.4922 0.9609 10 7 3.4883 6.6407 2.3423 11 6 4.5033 7.6860 2.5327 12 6 4.7079 7.9067 4.0348 13 6 3.3592 8.2135 4.6896 14 6 3.5613 8.4648 6.1617 15 1 4.5523 8.4107 6.5876 16 6 2.4805 8.7577 6.9659 17 7 1.2736 8.8232 6.4474 18 14 2.7300 9.0616 8.7920 19 1 3.6418 10.2183 8.9812 20 1 1.4207 9.3535 9.4288 21 1 3.3260 7.8540 9.4179 22 6 2.4158 7.0233 4.5004 23 6 2.1852 6.7926 3.0036 24 6 2.7712 3.4755 -0.7380 25 6 2.2716 2.0962 -1.1098 26 8 2.1223 1.6941 -2.2442 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.8321 1.5529 1.9384 33 1 1.3645 2.5311 1.6442 34 1 1.9829 4.6522 1.9214 35 1 4.1645 8.6129 2.0700 36 1 5.4425 7.3704 2.0785 37 1 5.3868 8.7451 4.1901 38 1 5.1325 7.0072 4.4806 39 1 2.9236 9.0989 4.2265 40 1 0.5131 9.0289 7.0132 41 1 2.8617 6.1319 4.9415 42 1 1.4634 7.2331 4.9871 43 1 1.6574 7.6467 2.5793 44 1 1.5949 5.8876 2.8601 45 1 1.9768 4.2128 -0.8537 46 1 3.6351 3.7455 -1.3455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334717215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:17 Heat of formation + Delta-G solvation = -79.839528 kcal Electronic energy + Delta-G solvation = -26140.617858 eV Core-core repulsion = 22450.298876 eV Total energy + Delta-G solvation = -3690.318982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86678 -40.99932 -38.62213 -37.66958 -35.93516 -35.30538 -33.73091 -32.56183 -31.57459 -29.98652 -28.59422 -27.73919 -24.90577 -24.34317 -23.89875 -22.79501 -21.69188 -20.74302 -20.18011 -19.14692 -18.25636 -18.00932 -17.53847 -16.90727 -16.56901 -16.36574 -16.34369 -15.36745 -15.20444 -15.05333 -14.83718 -14.70604 -14.58611 -14.41109 -14.32608 -14.07874 -13.91348 -13.30178 -13.19072 -13.08686 -12.96223 -12.79061 -12.72504 -12.45814 -12.29035 -12.11196 -12.01290 -11.91971 -11.45119 -11.25605 -11.07232 -10.96446 -10.73762 -10.35945 -10.21239 -9.81527 -9.37715 -8.04538 -6.17124 1.44707 1.44872 1.46180 1.52648 1.57073 2.00211 2.15484 2.46854 2.85695 3.22072 3.33432 3.48505 3.78595 3.97048 4.13463 4.17608 4.26533 4.27197 4.40150 4.48982 4.52937 4.54365 4.58161 4.63170 4.75441 4.77637 4.83565 4.84499 4.93695 4.97303 5.04211 5.25827 5.28240 5.28980 5.46620 5.48780 5.52423 5.55690 5.69325 6.00242 6.03711 6.07162 6.19979 6.44055 6.92162 6.97907 7.04796 7.50392 7.56718 8.98217 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.002914 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.317229 B = 9605.615254 C =10482.213666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.611 5.611 4 C 0.103 3.897 5 C 0.161 3.839 6 H 0.101 0.899 7 N -0.724 5.724 8 C 0.708 3.292 9 O -0.630 6.630 10 N -0.620 5.620 11 C 0.136 3.864 12 C -0.114 4.114 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.046 0.954 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.945 3.055 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.275 1.275 22 C -0.114 4.114 23 C 0.121 3.879 24 C -0.164 4.164 25 C 0.517 3.483 26 O -0.578 6.578 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.002 0.998 40 H 0.261 0.739 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 -14.987 -8.253 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 N -0.345 5.345 4 C -0.020 4.020 5 C 0.054 3.946 6 H 0.119 0.881 7 N -0.383 5.383 8 C 0.409 3.591 9 O -0.512 6.512 10 N -0.356 5.356 11 C 0.013 3.987 12 C -0.152 4.152 13 C 0.027 3.973 14 C -0.572 4.572 15 H 0.064 0.936 16 C -0.179 4.179 17 N -0.550 5.550 18 Si 0.771 3.229 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.153 4.153 23 C -0.002 4.002 24 C -0.205 4.205 25 C 0.306 3.694 26 O -0.458 6.458 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.251 0.749 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.301 -15.303 -9.175 17.990 hybrid contribution -0.339 0.644 1.210 1.412 sum -2.639 -14.658 -7.965 16.890 Atomic orbital electron populations 1.22123 0.95104 1.03328 1.01780 1.21583 0.94911 0.79901 1.04149 1.48430 1.64903 1.14489 1.06666 1.22427 1.00603 0.91855 0.87086 1.21491 1.00705 0.83585 0.88846 0.88105 1.45012 1.18959 1.16116 1.58212 1.15895 0.83344 0.80247 0.79577 1.90860 1.28015 1.81061 1.51244 1.47393 1.16624 1.21519 1.50044 1.21442 0.91473 0.89535 0.96230 1.21869 0.99105 1.00245 0.93983 1.18598 0.91473 0.93611 0.93651 1.21529 0.93232 1.47438 0.95023 0.93600 1.25577 0.95192 0.95208 1.01937 1.69923 0.98912 1.49616 1.36528 0.85820 0.77151 0.78554 0.81325 1.20267 1.20953 1.19996 1.21772 1.02496 0.97703 0.93283 1.21789 0.83124 1.01873 0.93400 1.22816 1.03847 0.95129 0.98732 1.21080 0.76140 0.87947 0.84261 1.90691 1.55916 1.76179 1.23004 0.91366 0.94610 0.89700 0.91251 0.87110 0.86758 0.88229 0.74899 0.91614 0.90145 0.92009 0.93815 0.98000 0.92966 0.94999 0.90260 0.91763 0.88638 0.86885 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.12 1.44 6.65 86.38 0.57 2.01 16 3 N -0.61 -9.81 2.93 -817.92 -2.40 -12.20 16 4 C 0.10 1.19 7.07 86.83 0.61 1.80 16 5 C 0.16 2.89 3.44 46.05 0.16 3.04 16 6 H 0.10 2.10 7.71 -2.39 -0.02 2.08 16 7 N -0.72 -15.08 5.08 -452.76 -2.30 -17.38 16 8 C 0.71 21.42 8.29 179.05 1.49 22.91 16 9 O -0.63 -23.29 15.52 -3.99 -0.06 -23.35 16 10 N -0.62 -19.62 2.97 -836.91 -2.49 -22.10 16 11 C 0.14 4.63 6.42 86.36 0.55 5.18 16 12 C -0.11 -4.41 5.30 30.67 0.16 -4.25 16 13 C 0.05 2.06 2.07 -11.52 -0.02 2.03 16 14 C -0.53 -27.67 8.56 25.60 0.22 -27.46 16 15 H 0.05 2.39 7.74 -2.91 -0.02 2.36 16 16 C 0.02 1.03 5.30 84.65 0.45 1.48 16 17 N -0.91 -48.24 11.30 21.45 0.24 -48.00 16 18 Si 0.94 41.40 29.54 68.60 2.03 43.43 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.11 -4.58 5.15 30.67 0.16 -4.42 16 23 C 0.12 3.64 6.43 86.36 0.56 4.20 16 24 C -0.16 -3.37 6.60 30.60 0.20 -3.17 16 25 C 0.52 12.01 8.02 87.91 0.71 12.71 16 26 O -0.58 -18.38 17.59 -3.04 -0.05 -18.44 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.08 7.93 -2.39 -0.02 1.06 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.10 0.82 7.78 -2.39 -0.02 0.80 16 34 H 0.41 6.66 5.85 -92.71 -0.54 6.11 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.74 7.03 -2.39 -0.02 2.73 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 41 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 3.63 6.02 -2.39 -0.01 3.61 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 44 H 0.10 2.12 5.57 -2.39 -0.01 2.10 16 45 H 0.11 2.21 8.08 -2.39 -0.02 2.19 16 46 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -68.26 365.52 1.95 -66.31 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.43 Total: 16.81 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 6.55 Total: 14.91 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -6.94 Total: -99.68 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.12 Total: -41.78 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -68.26 1.95 -66.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334717215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.526 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds