Wall clock time and date at job start Fri Apr 10 2020 18:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47177 * 2 1 4 4 C 1.46766 * 124.34841 * 269.99651 * 3 2 1 5 5 C 1.54475 * 105.46990 * 196.99419 * 4 3 2 6 6 H 1.08997 * 110.96860 * 92.71005 * 5 4 3 7 7 N 1.46501 * 110.96691 * 216.46443 * 5 4 3 8 8 C 1.34774 * 120.00147 * 198.83470 * 7 5 4 9 9 O 1.21593 * 120.00073 * 355.01451 * 8 7 5 10 10 N 1.34780 * 120.00283 * 175.01797 * 8 7 5 11 11 C 1.46926 * 120.62778 * 4.94172 * 10 8 7 12 12 C 1.53624 * 108.54365 * 126.37077 * 11 10 8 13 13 C 1.53039 * 109.24085 * 54.85326 * 12 11 10 14 14 C 1.50703 * 109.45798 * 178.48832 * 13 12 11 15 15 H 1.08002 * 119.99559 * 120.06744 * 14 13 12 16 16 C 1.37872 * 120.00234 * 300.06728 * 14 13 12 17 17 N 1.31513 * 120.00226 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47074 * 60.00330 * 18 16 14 20 20 H 1.48500 * 109.47296 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47249 * 300.00362 * 18 16 14 22 22 C 1.53032 * 109.54128 * 298.51173 * 13 12 11 23 23 C 1.46926 * 120.63397 * 185.22054 * 10 8 7 24 24 C 1.54622 * 101.76837 * 334.58590 * 5 4 3 25 25 C 1.34419 * 124.34830 * 89.97465 * 3 2 1 26 26 O 1.21280 * 124.94264 * 359.64689 * 25 3 2 27 27 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47054 * 300.00326 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.00177 * 1 2 3 30 30 H 1.09003 * 109.47054 * 239.99674 * 2 1 3 31 31 H 1.09000 * 109.47252 * 119.99823 * 2 1 3 32 32 H 1.08996 * 110.24186 * 315.99727 * 4 3 2 33 33 H 1.09001 * 110.24102 * 77.90510 * 4 3 2 34 34 H 0.97008 * 119.99957 * 18.83797 * 7 5 4 35 35 H 1.09005 * 109.58453 * 246.20252 * 11 10 8 36 36 H 1.08999 * 109.58771 * 6.62442 * 11 10 8 37 37 H 1.08994 * 109.62987 * 294.86456 * 12 11 10 38 38 H 1.08996 * 109.43185 * 174.72426 * 12 11 10 39 39 H 1.09003 * 109.44926 * 58.52569 * 13 12 11 40 40 H 0.96995 * 120.00113 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49777 * 301.41517 * 22 13 12 42 42 H 1.08996 * 109.52994 * 181.33072 * 22 13 12 43 43 H 1.09000 * 109.58513 * 353.37558 * 23 10 8 44 44 H 1.09006 * 109.58138 * 113.65118 * 23 10 8 45 45 H 1.09008 * 110.48420 * 266.12030 * 24 5 4 46 46 H 1.09002 * 110.48882 * 143.48181 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1740 3.3444 -0.7486 6 1 4.2328 3.1039 -0.8444 7 7 2.8462 4.5639 -1.4911 8 6 3.7210 5.5887 -1.5238 9 8 4.7412 5.5384 -0.8642 10 7 3.4650 6.6693 -2.2876 11 6 2.1888 6.7934 -3.0051 12 6 1.5497 8.1406 -2.6356 13 6 2.5448 9.2670 -2.9241 14 6 1.9093 10.5940 -2.5982 15 1 2.3538 11.2370 -1.8530 16 6 0.7605 10.9872 -3.2514 17 7 0.2190 10.2040 -4.1586 18 14 -0.0275 12.6318 -2.8469 19 1 0.9371 13.7254 -3.1279 20 1 -1.2427 12.8168 -3.6802 21 1 -0.4037 12.6606 -1.4106 22 6 3.7967 9.0765 -2.0650 23 6 4.4591 7.7426 -2.4235 24 6 2.7687 3.4757 0.7378 25 6 2.2707 2.0965 1.1098 26 8 2.1215 1.6943 2.2442 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.8328 1.5531 -1.9381 33 1 1.3636 2.5291 -1.6441 34 1 1.9994 4.6340 -1.9593 35 1 2.3683 6.7535 -4.0795 36 1 1.5247 5.9799 -2.7130 37 1 1.2919 8.1454 -1.5766 38 1 0.6487 8.2899 -3.2305 39 1 2.8212 9.2459 -3.9783 40 1 -0.5894 10.4805 -4.6178 41 1 3.5177 9.0725 -1.0113 42 1 4.4953 9.8917 -2.2532 43 1 5.2935 7.5555 -1.7475 44 1 4.8218 7.7767 -3.4509 45 1 1.9734 4.2123 0.8527 46 1 3.6316 3.7466 1.3461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334717216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:21 Heat of formation + Delta-G solvation = -60.595858 kcal Electronic energy + Delta-G solvation = -26165.210688 eV Core-core repulsion = 22475.726175 eV Total energy + Delta-G solvation = -3689.484514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90417 -39.79326 -37.25509 -36.54698 -34.99537 -33.62409 -32.61953 -31.04888 -30.06349 -29.14179 -27.69877 -26.09656 -23.82537 -23.16578 -22.50090 -21.72739 -20.37639 -19.69205 -18.97767 -17.76918 -17.07255 -16.72378 -16.27869 -15.95763 -15.42440 -15.07233 -14.64251 -14.44384 -14.06929 -13.95355 -13.80220 -13.67184 -13.43362 -13.15880 -12.86646 -12.68152 -12.64305 -12.41448 -12.29235 -11.94879 -11.66514 -11.44038 -11.42050 -11.31677 -10.95558 -10.69872 -10.43571 -10.22808 -10.12755 -9.83198 -9.60641 -9.20234 -9.13490 -9.06427 -8.98133 -8.41331 -7.98264 -6.06996 -4.12853 2.39019 2.53861 2.91451 3.27608 3.32275 3.35668 3.40768 3.98326 4.14896 4.29535 4.38119 4.62385 4.68073 4.77049 4.87438 5.01538 5.11107 5.22276 5.27378 5.35455 5.45768 5.50659 5.60663 5.75408 5.77800 5.83019 5.89400 6.01153 6.13217 6.19391 6.22679 6.41717 6.46535 6.63313 6.77660 6.80807 6.94824 7.08774 7.15839 7.35550 7.62855 7.88058 7.93847 7.98999 8.18651 8.36687 8.81783 8.90408 9.52472 10.98433 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.002935 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.340865 B = 9538.764982 C =10136.972584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.160 3.840 6 H 0.109 0.891 7 N -0.742 5.742 8 C 0.708 3.292 9 O -0.599 6.599 10 N -0.616 5.616 11 C 0.109 3.891 12 C -0.123 4.123 13 C 0.050 3.950 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.124 4.124 23 C 0.129 3.871 24 C -0.169 4.169 25 C 0.523 3.477 26 O -0.531 6.531 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.104 0.896 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.109 0.891 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 -18.382 1.165 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.053 3.947 6 H 0.127 0.873 7 N -0.402 5.402 8 C 0.410 3.590 9 O -0.479 6.479 10 N -0.352 5.352 11 C -0.013 4.013 12 C -0.162 4.162 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C 0.007 3.993 24 C -0.211 4.211 25 C 0.310 3.690 26 O -0.407 6.407 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.131 -18.698 2.085 18.934 hybrid contribution -1.158 0.992 -0.172 1.535 sum 0.973 -17.706 1.913 17.835 Atomic orbital electron populations 1.22170 0.95686 1.02402 1.02648 1.21362 0.94466 0.80918 1.03216 1.48326 1.66412 1.13895 1.06957 1.22286 0.99815 0.92796 0.87665 1.21442 1.00260 0.83372 0.89641 0.87313 1.45196 1.22008 1.15478 1.57471 1.15792 0.82969 0.80044 0.80236 1.90876 1.28278 1.81176 1.47523 1.47434 1.19058 1.19489 1.49233 1.22008 0.83303 1.00028 0.95968 1.22098 1.02305 0.91354 1.00446 1.18612 0.89849 0.93587 0.94830 1.21182 1.09449 1.02605 1.21766 0.92741 1.24948 0.97019 0.97042 0.94919 1.69814 1.21104 1.36624 1.25652 0.86679 0.78705 0.84409 0.78340 1.20287 1.21328 1.20340 1.22021 0.99404 0.94020 1.00829 1.21594 0.90520 0.86462 1.00739 1.22898 1.04409 0.95402 0.98373 1.20939 0.76287 0.87437 0.84287 1.90719 1.53562 1.75262 1.21140 0.91380 0.92160 0.92291 0.90238 0.89929 0.89343 0.90452 0.76302 0.91852 0.92568 0.94222 0.87840 0.95455 0.92941 0.92915 0.92114 0.90208 0.92370 0.87242 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.16 0.38 -0.80 16 2 C 0.12 0.89 6.65 -4.04 -0.03 0.87 16 3 N -0.62 -5.67 2.93 -172.41 -0.51 -6.17 16 4 C 0.10 0.71 7.07 -3.12 -0.02 0.69 16 5 C 0.16 1.61 3.39 -66.30 -0.22 1.38 16 6 H 0.11 1.18 7.80 -51.93 -0.41 0.77 16 7 N -0.74 -8.71 5.09 -57.08 -0.29 -9.00 16 8 C 0.71 11.41 8.29 -86.92 -0.72 10.69 16 9 O -0.60 -11.47 15.56 5.28 0.08 -11.39 16 10 N -0.62 -10.28 2.97 -178.23 -0.53 -10.81 16 11 C 0.11 1.77 6.42 -3.49 -0.02 1.74 16 12 C -0.12 -2.57 5.17 -26.39 -0.14 -2.70 16 13 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 14 C -0.51 -13.31 8.56 -34.44 -0.29 -13.60 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -23.78 11.30 55.43 0.63 -23.15 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.12 -2.46 5.30 -26.62 -0.14 -2.60 16 23 C 0.13 2.26 6.44 -3.71 -0.02 2.23 16 24 C -0.17 -1.94 6.59 -26.75 -0.18 -2.11 16 25 C 0.52 6.44 8.02 -10.86 -0.09 6.36 16 26 O -0.53 -8.55 17.59 5.56 0.10 -8.46 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.48 7.77 -51.93 -0.40 0.07 16 34 H 0.40 3.96 5.85 -40.82 -0.24 3.72 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 2.41 6.03 -51.93 -0.31 2.10 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.11 1.28 8.08 -51.92 -0.42 0.86 16 46 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -31.41 365.66 -9.27 -40.68 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.46 Total: 2.69 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.78 Total: 4.60 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.70 Total: -49.13 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.18 Total: -19.85 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.41 -9.27 -40.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334717216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.911 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds