Wall clock time and date at job start Fri Apr 10 2020 18:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47177 * 2 1 4 4 C 1.46766 * 124.34841 * 269.99651 * 3 2 1 5 5 C 1.54475 * 105.46990 * 196.99419 * 4 3 2 6 6 H 1.08997 * 110.96860 * 92.71005 * 5 4 3 7 7 N 1.46501 * 110.96691 * 216.46443 * 5 4 3 8 8 C 1.34774 * 120.00147 * 198.83470 * 7 5 4 9 9 O 1.21593 * 120.00073 * 355.01451 * 8 7 5 10 10 N 1.34780 * 120.00283 * 175.01797 * 8 7 5 11 11 C 1.46926 * 120.62778 * 4.94172 * 10 8 7 12 12 C 1.53624 * 108.54365 * 126.37077 * 11 10 8 13 13 C 1.53039 * 109.24085 * 54.85326 * 12 11 10 14 14 C 1.50703 * 109.45798 * 178.48832 * 13 12 11 15 15 H 1.08002 * 119.99559 * 120.06744 * 14 13 12 16 16 C 1.37872 * 120.00234 * 300.06728 * 14 13 12 17 17 N 1.31513 * 120.00226 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47074 * 60.00330 * 18 16 14 20 20 H 1.48500 * 109.47296 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47249 * 300.00362 * 18 16 14 22 22 C 1.53032 * 109.54128 * 298.51173 * 13 12 11 23 23 C 1.46926 * 120.63397 * 185.22054 * 10 8 7 24 24 C 1.54622 * 101.76837 * 334.58590 * 5 4 3 25 25 C 1.34419 * 124.34830 * 89.97465 * 3 2 1 26 26 O 1.21280 * 124.94264 * 359.64689 * 25 3 2 27 27 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47054 * 300.00326 * 1 2 3 29 29 H 1.09000 * 109.47252 * 60.00177 * 1 2 3 30 30 H 1.09003 * 109.47054 * 239.99674 * 2 1 3 31 31 H 1.09000 * 109.47252 * 119.99823 * 2 1 3 32 32 H 1.08996 * 110.24186 * 315.99727 * 4 3 2 33 33 H 1.09001 * 110.24102 * 77.90510 * 4 3 2 34 34 H 0.97008 * 119.99957 * 18.83797 * 7 5 4 35 35 H 1.09005 * 109.58453 * 246.20252 * 11 10 8 36 36 H 1.08999 * 109.58771 * 6.62442 * 11 10 8 37 37 H 1.08994 * 109.62987 * 294.86456 * 12 11 10 38 38 H 1.08996 * 109.43185 * 174.72426 * 12 11 10 39 39 H 1.09003 * 109.44926 * 58.52569 * 13 12 11 40 40 H 0.96995 * 120.00113 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.49777 * 301.41517 * 22 13 12 42 42 H 1.08996 * 109.52994 * 181.33072 * 22 13 12 43 43 H 1.09000 * 109.58513 * 353.37558 * 23 10 8 44 44 H 1.09006 * 109.58138 * 113.65118 * 23 10 8 45 45 H 1.09008 * 110.48420 * 266.12030 * 24 5 4 46 46 H 1.09002 * 110.48882 * 143.48181 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 -1.2117 5 6 3.1740 3.3444 -0.7486 6 1 4.2328 3.1039 -0.8444 7 7 2.8462 4.5639 -1.4911 8 6 3.7210 5.5887 -1.5238 9 8 4.7412 5.5384 -0.8642 10 7 3.4650 6.6693 -2.2876 11 6 2.1888 6.7934 -3.0051 12 6 1.5497 8.1406 -2.6356 13 6 2.5448 9.2670 -2.9241 14 6 1.9093 10.5940 -2.5982 15 1 2.3538 11.2370 -1.8530 16 6 0.7605 10.9872 -3.2514 17 7 0.2190 10.2040 -4.1586 18 14 -0.0275 12.6318 -2.8469 19 1 0.9371 13.7254 -3.1279 20 1 -1.2427 12.8168 -3.6802 21 1 -0.4037 12.6606 -1.4106 22 6 3.7967 9.0765 -2.0650 23 6 4.4591 7.7426 -2.4235 24 6 2.7687 3.4757 0.7378 25 6 2.2707 2.0965 1.1098 26 8 2.1215 1.6943 2.2442 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.8328 1.5531 -1.9381 33 1 1.3636 2.5291 -1.6441 34 1 1.9994 4.6340 -1.9593 35 1 2.3683 6.7535 -4.0795 36 1 1.5247 5.9799 -2.7130 37 1 1.2919 8.1454 -1.5766 38 1 0.6487 8.2899 -3.2305 39 1 2.8212 9.2459 -3.9783 40 1 -0.5894 10.4805 -4.6178 41 1 3.5177 9.0725 -1.0113 42 1 4.4953 9.8917 -2.2532 43 1 5.2935 7.5555 -1.7475 44 1 4.8218 7.7767 -3.4509 45 1 1.9734 4.2123 0.8527 46 1 3.6316 3.7466 1.3461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334717216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:20 Heat of formation + Delta-G solvation = -80.334464 kcal Electronic energy + Delta-G solvation = -26166.066619 eV Core-core repulsion = 22475.726175 eV Total energy + Delta-G solvation = -3690.340444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86837 -40.99463 -38.61613 -37.67130 -35.92959 -35.31479 -33.73745 -32.56246 -31.55537 -29.98542 -28.60326 -27.73947 -24.90727 -24.34678 -23.91223 -22.79929 -21.67277 -20.74664 -20.22518 -19.10619 -18.25994 -17.99443 -17.56868 -16.91278 -16.58336 -16.46190 -16.23173 -15.45972 -15.18103 -14.93816 -14.84250 -14.73180 -14.56212 -14.45646 -14.35942 -14.15155 -13.84441 -13.29874 -13.19084 -13.09110 -12.96183 -12.79887 -12.73479 -12.46027 -12.30132 -12.11306 -12.00618 -11.94802 -11.45630 -11.26558 -11.07562 -10.96440 -10.74960 -10.37077 -10.21901 -9.81276 -9.37224 -8.06071 -6.18296 1.43157 1.43730 1.44422 1.51010 1.58495 1.98705 2.16336 2.45486 2.86621 3.20478 3.32861 3.49188 3.78738 3.97102 4.13723 4.17305 4.26776 4.27488 4.39810 4.49468 4.52099 4.54143 4.58661 4.63147 4.74280 4.77403 4.83679 4.84415 4.93209 4.97553 5.04406 5.24763 5.26903 5.29169 5.47063 5.47563 5.52949 5.56276 5.68329 5.99520 6.02740 6.07355 6.18032 6.43224 6.90631 6.98237 7.04367 7.48995 7.57391 8.96711 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019849 B = 0.002935 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.340865 B = 9538.764982 C =10136.972584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.611 5.611 4 C 0.105 3.895 5 C 0.162 3.838 6 H 0.105 0.895 7 N -0.724 5.724 8 C 0.707 3.293 9 O -0.631 6.631 10 N -0.620 5.620 11 C 0.121 3.879 12 C -0.115 4.115 13 C 0.046 3.954 14 C -0.536 4.536 15 H 0.044 0.956 16 C 0.020 3.980 17 N -0.909 5.909 18 Si 0.944 3.056 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.278 1.278 22 C -0.115 4.115 23 C 0.136 3.864 24 C -0.168 4.168 25 C 0.517 3.483 26 O -0.579 6.579 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.080 0.920 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -20.052 -0.307 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.345 5.345 4 C -0.018 4.018 5 C 0.056 3.944 6 H 0.123 0.877 7 N -0.383 5.383 8 C 0.409 3.591 9 O -0.512 6.512 10 N -0.356 5.356 11 C -0.001 4.001 12 C -0.154 4.154 13 C 0.028 3.972 14 C -0.574 4.574 15 H 0.062 0.938 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.771 3.229 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.203 1.203 22 C -0.153 4.153 23 C 0.013 3.987 24 C -0.210 4.210 25 C 0.306 3.694 26 O -0.459 6.459 27 H 0.104 0.896 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.133 0.867 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.118 0.882 34 H 0.251 0.749 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.608 -20.400 0.565 20.471 hybrid contribution -1.004 1.520 0.286 1.844 sum 0.604 -18.880 0.851 18.909 Atomic orbital electron populations 1.22133 0.95246 1.03330 1.01722 1.21592 0.94788 0.79809 1.04265 1.48435 1.64887 1.14516 1.06638 1.22442 1.00601 0.91685 0.87041 1.21503 1.00847 0.83638 0.88455 0.87743 1.45016 1.21562 1.14854 1.56855 1.15911 0.83130 0.80473 0.79634 1.90863 1.29908 1.81820 1.48636 1.47399 1.18965 1.19655 1.49585 1.21878 0.83361 0.98457 0.96411 1.21861 1.01128 0.93527 0.98915 1.18590 0.91413 0.93251 0.93955 1.21537 1.10000 1.04140 1.21714 0.93800 1.25563 0.97508 0.99808 0.94991 1.69913 1.21247 1.37639 1.26041 0.85836 0.77966 0.81130 0.78017 1.20102 1.20769 1.20323 1.21870 0.98379 0.95894 0.99207 1.21447 0.90439 0.85325 1.01466 1.22823 1.03621 0.95123 0.99384 1.21035 0.76170 0.87872 0.84352 1.90688 1.55898 1.76187 1.23128 0.89628 0.94912 0.91256 0.86702 0.91376 0.86058 0.88242 0.74879 0.91031 0.88758 0.95723 0.90213 0.97539 0.92925 0.94394 0.91971 0.90225 0.90988 0.87610 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.12 1.39 6.65 86.38 0.57 1.97 16 3 N -0.61 -9.70 2.93 -817.99 -2.40 -12.09 16 4 C 0.11 1.08 7.07 86.83 0.61 1.70 16 5 C 0.16 2.86 3.39 46.05 0.16 3.02 16 6 H 0.10 2.03 7.80 -2.39 -0.02 2.01 16 7 N -0.72 -14.89 5.09 -452.78 -2.31 -17.20 16 8 C 0.71 21.41 8.29 179.05 1.48 22.90 16 9 O -0.63 -23.46 15.56 -4.01 -0.06 -23.53 16 10 N -0.62 -19.59 2.97 -836.04 -2.48 -22.07 16 11 C 0.12 3.64 6.42 86.51 0.56 4.20 16 12 C -0.12 -4.77 5.17 30.82 0.16 -4.61 16 13 C 0.05 2.14 2.06 -11.52 -0.02 2.12 16 14 C -0.54 -28.30 8.56 25.60 0.22 -28.08 16 15 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 16 C 0.02 1.08 5.30 84.65 0.45 1.52 16 17 N -0.91 -48.54 11.30 21.45 0.24 -48.30 16 18 Si 0.94 42.15 29.54 68.60 2.03 44.18 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.12 -4.58 5.30 30.67 0.16 -4.41 16 23 C 0.14 4.62 6.44 86.36 0.56 5.17 16 24 C -0.17 -3.75 6.59 30.58 0.20 -3.55 16 25 C 0.52 12.52 8.02 87.90 0.71 13.23 16 26 O -0.58 -19.17 17.59 -3.03 -0.05 -19.23 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.05 7.93 -2.39 -0.02 1.03 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.70 7.77 -2.39 -0.02 0.68 16 34 H 0.41 6.50 5.85 -92.70 -0.54 5.96 16 35 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.09 2.10 5.64 -2.39 -0.01 2.09 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 3.71 6.03 -2.39 -0.01 3.70 16 39 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.73 7.00 -2.39 -0.02 2.71 16 44 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 45 H 0.11 2.43 8.08 -2.38 -0.02 2.41 16 46 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -70.30 365.66 1.95 -68.35 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.43 Total: 15.89 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.55 Total: 13.99 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -6.94 Total: -99.66 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.12 Total: -42.75 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -70.30 1.95 -68.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334717216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.984 kcal (2) G-P(sol) polarization free energy of solvation -70.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds