Wall clock time and date at job start Fri Apr 10 2020 18:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47270 * 2 1 4 4 N 1.46901 * 109.47157 * 239.99889 * 2 1 3 5 5 C 1.46894 * 110.99953 * 85.00029 * 4 2 1 6 6 C 1.50700 * 109.47027 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00177 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00198 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00302 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.46960 * 90.00067 * 9 8 6 11 11 H 1.08003 * 120.00543 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00231 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99522 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46929 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46955 * 119.99829 * 14 12 10 17 17 H 1.48498 * 109.47150 * 240.00184 * 14 12 10 18 18 C 1.46504 * 119.99802 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47302 * 90.00074 * 18 8 6 20 20 C 1.47196 * 109.47167 * 180.02562 * 19 18 8 21 21 N 6.96652 * 102.38371 * 316.25716 * 2 1 3 22 22 C 1.53007 * 109.46872 * 119.99817 * 2 1 3 23 23 H 1.08995 * 110.74673 * 60.02954 * 22 2 1 24 24 C 1.55306 * 110.84553 * 183.72387 * 22 2 1 25 25 C 1.54945 * 100.94001 * 152.32265 * 24 22 2 26 26 O 1.43641 * 105.13547 * 323.55482 * 25 24 22 27 27 C 1.43228 * 109.97356 * 24.42912 * 26 25 24 28 28 H 1.08995 * 109.47081 * 305.12757 * 1 2 3 29 29 H 1.09001 * 109.46598 * 65.13339 * 1 2 3 30 30 H 1.08997 * 109.47181 * 185.12789 * 1 2 3 31 31 H 1.00894 * 111.00031 * 321.04398 * 4 2 1 32 32 H 1.09001 * 109.47327 * 299.99860 * 5 4 2 33 33 H 1.08997 * 109.47349 * 60.00057 * 5 4 2 34 34 H 1.09000 * 109.46796 * 209.99621 * 9 8 6 35 35 H 1.08999 * 109.46745 * 330.00124 * 9 8 6 36 36 H 0.97006 * 119.99616 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47082 * 209.99915 * 18 8 6 38 38 H 1.08998 * 109.47344 * 330.00381 * 18 8 6 39 39 H 1.08998 * 109.47061 * 300.00660 * 19 18 8 40 40 H 1.09005 * 109.46798 * 59.99544 * 19 18 8 41 41 H 1.09001 * 111.12448 * 270.24745 * 24 22 2 42 42 H 1.08999 * 111.12639 * 34.40028 * 24 22 2 43 43 H 1.08997 * 110.30950 * 204.63813 * 25 24 22 44 44 H 1.09000 * 110.30968 * 82.47417 * 25 24 22 45 45 H 1.09003 * 109.83357 * 238.77454 * 27 26 25 46 46 H 1.09003 * 109.90896 * 117.84403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5886 -0.5216 -3.5556 7 8 2.8697 -1.6983 -3.4696 8 7 2.7297 0.1206 -4.7321 9 6 3.2222 -0.6026 -5.9071 10 6 2.0570 -1.1942 -6.6576 11 1 1.0503 -1.0466 -6.2954 12 6 2.2761 -1.9248 -7.8062 13 7 3.5020 -2.1049 -8.2470 14 14 0.8318 -2.6587 -8.7362 15 1 -0.4328 -2.3146 -8.0379 16 1 0.8012 -2.1101 -10.1157 17 1 0.9790 -4.1353 -8.7937 18 6 2.3906 1.5421 -4.8359 19 6 3.6270 2.3859 -4.5190 20 6 3.2861 3.8141 -4.6227 21 7 3.0241 4.9159 -4.7047 22 6 2.0400 -0.7213 1.2493 23 1 1.6886 -1.7528 1.2701 24 6 3.5897 -0.6588 1.3297 25 6 3.8085 -0.7441 2.8612 26 8 2.7225 -0.0010 3.4372 27 6 1.6151 0.0299 2.5294 28 1 -0.3633 0.5913 0.8405 29 1 -0.3632 0.4322 -0.9324 30 1 -0.3633 -1.0235 0.0918 31 1 1.4497 -1.4979 -1.4100 32 1 1.0871 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 3.7616 0.0858 -6.5577 35 1 3.8919 -1.4011 -5.5878 36 1 3.6562 -2.6193 -9.0549 37 1 2.0506 1.7616 -5.8480 38 1 1.5976 1.7792 -4.1267 39 1 3.9671 2.1663 -3.5070 40 1 4.4201 2.1487 -5.2282 41 1 4.0441 -1.5084 0.8199 42 1 3.9661 0.2832 0.9309 43 1 4.7623 -0.2920 3.1329 44 1 3.7734 -1.7824 3.1911 45 1 1.3649 1.0626 2.2862 46 1 0.7530 -0.4633 2.9785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337227079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:36 Heat of formation + Delta-G solvation = -58.358854 kcal Electronic energy + Delta-G solvation = -25775.532500 eV Core-core repulsion = 22086.144990 eV Total energy + Delta-G solvation = -3689.387510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.90510 -39.25758 -37.01861 -36.62458 -35.22064 -33.01473 -32.38787 -30.86850 -30.60483 -28.52618 -27.70471 -25.83087 -24.04021 -23.35143 -22.31219 -22.03648 -20.57033 -18.59067 -17.64972 -17.03148 -16.60653 -16.50611 -16.15009 -15.77080 -15.33200 -14.96478 -14.75919 -14.48462 -14.35518 -14.05178 -13.67390 -13.61290 -13.35521 -13.12713 -12.98029 -12.65925 -12.47267 -12.41954 -12.26063 -11.90064 -11.67218 -11.61771 -11.47912 -11.31384 -11.18885 -11.01178 -10.99699 -10.87659 -10.82292 -10.65752 -10.22343 -9.72210 -9.71273 -9.06390 -8.50559 -8.40087 -7.86690 -6.11867 -4.16573 2.70274 2.78620 3.25328 3.27585 3.33976 3.36733 3.49074 3.71838 3.92700 4.24640 4.38370 4.41018 4.57481 4.86332 4.89306 4.94114 4.99745 5.05199 5.07597 5.10541 5.12663 5.23670 5.25240 5.29683 5.36014 5.46275 5.51967 5.55097 5.58414 5.72274 5.74099 5.79656 5.90314 5.97367 6.03681 6.10457 6.74683 6.80946 7.00140 7.31263 7.35948 7.40929 7.54616 7.84311 8.14338 8.24141 8.81633 8.97132 9.49161 10.96225 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003408 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.081409 B = 8213.512016 C = 9495.032029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.665 5.665 5 C 0.038 3.962 6 C 0.506 3.494 7 O -0.519 6.519 8 N -0.599 5.599 9 C 0.245 3.755 10 C -0.528 4.528 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.118 3.882 19 C -0.051 4.051 20 C 0.217 3.783 21 N -0.446 5.446 22 C -0.109 4.109 23 H 0.086 0.914 24 C -0.135 4.135 25 C 0.046 3.954 26 O -0.389 6.389 27 C 0.056 3.944 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.353 0.647 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 5.833 17.369 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.015 4.015 3 H 0.098 0.902 4 N -0.297 5.297 5 C -0.095 4.095 6 C 0.292 3.708 7 O -0.394 6.394 8 N -0.331 5.331 9 C 0.127 3.873 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.101 4.101 21 N -0.123 5.123 22 C -0.128 4.128 23 H 0.104 0.896 24 C -0.172 4.172 25 C -0.031 4.031 26 O -0.308 6.308 27 C -0.021 4.021 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.174 0.826 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.627 6.899 17.475 18.858 hybrid contribution -1.662 -0.799 -1.135 2.165 sum -3.289 6.100 16.340 17.749 Atomic orbital electron populations 1.22585 0.97086 1.02652 1.02405 1.21524 0.92477 0.97667 0.89859 0.90162 1.60186 1.58101 1.09122 1.02304 1.21967 1.00687 0.96125 0.90678 1.20219 0.79210 0.87686 0.83677 1.90700 1.49053 1.15616 1.84037 1.48217 1.65103 1.08453 1.11354 1.19338 0.95258 0.92233 0.80504 1.21443 0.93376 1.33358 1.08551 0.92425 1.24921 0.95850 0.95962 0.97269 1.69931 1.19400 1.40485 1.23323 0.86468 0.82511 0.79097 0.79483 1.19864 1.20978 1.20871 1.21292 0.93914 0.81529 1.04116 1.19913 1.01999 0.81660 1.05669 1.29101 0.93227 0.94951 0.92841 1.81190 1.08902 1.12922 1.09281 1.22680 0.96231 1.00377 0.93544 0.89601 1.23131 0.95075 1.04005 0.95010 1.23461 0.90459 0.96063 0.93078 1.88381 1.24814 1.75159 1.42491 1.23163 0.89602 1.00245 0.89076 0.91916 0.92298 0.92028 0.82643 0.92743 0.88806 0.94772 0.93528 0.92706 0.88789 0.90846 0.87564 0.86438 0.89130 0.90487 0.89955 0.92344 0.91389 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 8.91 37.16 0.33 -1.16 16 2 C 0.10 0.84 1.96 -67.71 -0.13 0.71 16 3 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 4 N -0.67 -7.75 5.62 -107.99 -0.61 -8.36 16 5 C 0.04 0.45 4.52 -4.98 -0.02 0.43 16 6 C 0.51 8.83 7.71 -10.99 -0.08 8.75 16 7 O -0.52 -11.58 15.78 5.56 0.09 -11.49 16 8 N -0.60 -10.48 2.46 -175.06 -0.43 -10.91 16 9 C 0.25 5.68 5.16 -5.19 -0.03 5.65 16 10 C -0.53 -13.84 9.39 -34.44 -0.32 -14.17 16 11 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 14 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 19 C -0.05 -0.51 6.03 -29.52 -0.18 -0.68 16 20 C 0.22 2.53 15.43 -20.78 -0.32 2.21 16 21 N -0.45 -6.39 18.53 42.13 0.78 -5.61 16 22 C -0.11 -0.96 2.74 -88.67 -0.24 -1.20 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 C -0.13 -1.24 6.38 -24.48 -0.16 -1.39 16 25 C 0.05 0.41 7.78 38.18 0.30 0.71 16 26 O -0.39 -4.25 11.36 -35.23 -0.40 -4.65 16 27 C 0.06 0.49 6.58 37.88 0.25 0.74 16 28 H 0.06 0.42 7.43 -51.93 -0.39 0.04 16 29 H 0.06 0.49 7.35 -51.93 -0.38 0.11 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.35 4.55 8.18 -39.29 -0.32 4.23 16 32 H 0.05 0.58 6.62 -51.93 -0.34 0.24 16 33 H 0.09 0.92 7.10 -51.93 -0.37 0.55 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 39 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 40 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.55 7.60 -51.93 -0.39 0.15 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.39 381.55 -7.29 -39.67 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.46 Total: 0.48 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -0.73 Total: 3.65 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.48 Total: -49.34 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.31 Total: -16.14 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.39 -7.29 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337227079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.684 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds