Wall clock time and date at job start Fri Apr 10 2020 18:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47270 * 2 1 4 4 N 1.46901 * 109.47157 * 239.99889 * 2 1 3 5 5 C 1.46894 * 110.99953 * 85.00029 * 4 2 1 6 6 C 1.50700 * 109.47027 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00177 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00198 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00302 * 179.97438 * 8 6 5 10 10 C 1.50693 * 109.46960 * 90.00067 * 9 8 6 11 11 H 1.08003 * 120.00543 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00231 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99522 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00358 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46929 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46955 * 119.99829 * 14 12 10 17 17 H 1.48498 * 109.47150 * 240.00184 * 14 12 10 18 18 C 1.46504 * 119.99802 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47302 * 90.00074 * 18 8 6 20 20 C 1.47196 * 109.47167 * 180.02562 * 19 18 8 21 21 N 6.96652 * 102.38371 * 316.25716 * 2 1 3 22 22 C 1.53007 * 109.46872 * 119.99817 * 2 1 3 23 23 H 1.08995 * 110.74673 * 60.02954 * 22 2 1 24 24 C 1.55306 * 110.84553 * 183.72387 * 22 2 1 25 25 C 1.54945 * 100.94001 * 152.32265 * 24 22 2 26 26 O 1.43641 * 105.13547 * 323.55482 * 25 24 22 27 27 C 1.43228 * 109.97356 * 24.42912 * 26 25 24 28 28 H 1.08995 * 109.47081 * 305.12757 * 1 2 3 29 29 H 1.09001 * 109.46598 * 65.13339 * 1 2 3 30 30 H 1.08997 * 109.47181 * 185.12789 * 1 2 3 31 31 H 1.00894 * 111.00031 * 321.04398 * 4 2 1 32 32 H 1.09001 * 109.47327 * 299.99860 * 5 4 2 33 33 H 1.08997 * 109.47349 * 60.00057 * 5 4 2 34 34 H 1.09000 * 109.46796 * 209.99621 * 9 8 6 35 35 H 1.08999 * 109.46745 * 330.00124 * 9 8 6 36 36 H 0.97006 * 119.99616 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47082 * 209.99915 * 18 8 6 38 38 H 1.08998 * 109.47344 * 330.00381 * 18 8 6 39 39 H 1.08998 * 109.47061 * 300.00660 * 19 18 8 40 40 H 1.09005 * 109.46798 * 59.99544 * 19 18 8 41 41 H 1.09001 * 111.12448 * 270.24745 * 24 22 2 42 42 H 1.08999 * 111.12639 * 34.40028 * 24 22 2 43 43 H 1.08997 * 110.30950 * 204.63813 * 25 24 22 44 44 H 1.09000 * 110.30968 * 82.47417 * 25 24 22 45 45 H 1.09003 * 109.83357 * 238.77454 * 27 26 25 46 46 H 1.09003 * 109.90896 * 117.84403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5886 -0.5216 -3.5556 7 8 2.8697 -1.6983 -3.4696 8 7 2.7297 0.1206 -4.7321 9 6 3.2222 -0.6026 -5.9071 10 6 2.0570 -1.1942 -6.6576 11 1 1.0503 -1.0466 -6.2954 12 6 2.2761 -1.9248 -7.8062 13 7 3.5020 -2.1049 -8.2470 14 14 0.8318 -2.6587 -8.7362 15 1 -0.4328 -2.3146 -8.0379 16 1 0.8012 -2.1101 -10.1157 17 1 0.9790 -4.1353 -8.7937 18 6 2.3906 1.5421 -4.8359 19 6 3.6270 2.3859 -4.5190 20 6 3.2861 3.8141 -4.6227 21 7 3.0241 4.9159 -4.7047 22 6 2.0400 -0.7213 1.2493 23 1 1.6886 -1.7528 1.2701 24 6 3.5897 -0.6588 1.3297 25 6 3.8085 -0.7441 2.8612 26 8 2.7225 -0.0010 3.4372 27 6 1.6151 0.0299 2.5294 28 1 -0.3633 0.5913 0.8405 29 1 -0.3632 0.4322 -0.9324 30 1 -0.3633 -1.0235 0.0918 31 1 1.4497 -1.4979 -1.4100 32 1 1.0871 0.6162 -2.5525 33 1 2.7589 1.0461 -2.1182 34 1 3.7616 0.0858 -6.5577 35 1 3.8919 -1.4011 -5.5878 36 1 3.6562 -2.6193 -9.0549 37 1 2.0506 1.7616 -5.8480 38 1 1.5976 1.7792 -4.1267 39 1 3.9671 2.1663 -3.5070 40 1 4.4201 2.1487 -5.2282 41 1 4.0441 -1.5084 0.8199 42 1 3.9661 0.2832 0.9309 43 1 4.7623 -0.2920 3.1329 44 1 3.7734 -1.7824 3.1911 45 1 1.3649 1.0626 2.2862 46 1 0.7530 -0.4633 2.9785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337227079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:35 Heat of formation + Delta-G solvation = -80.557001 kcal Electronic energy + Delta-G solvation = -25776.495084 eV Core-core repulsion = 22086.144990 eV Total energy + Delta-G solvation = -3690.350094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87109 -40.35825 -38.03255 -37.54583 -36.58670 -34.86210 -33.32953 -32.12604 -31.35343 -29.68502 -28.83476 -27.05821 -25.28386 -24.52091 -23.48523 -22.78614 -21.30566 -19.88301 -18.79458 -18.31981 -18.00881 -17.48698 -17.27751 -16.77632 -16.51667 -16.25138 -15.76727 -15.59263 -15.28586 -15.18139 -14.66250 -14.53378 -14.41860 -14.12233 -13.99431 -13.81547 -13.59562 -13.50943 -13.41264 -13.12369 -12.95727 -12.78485 -12.65651 -12.51774 -12.37801 -12.17531 -12.15505 -11.92115 -11.81991 -11.68113 -11.62419 -11.51347 -10.58158 -10.49687 -10.41526 -9.43035 -9.26083 -8.16773 -6.28963 1.39599 1.42241 1.52239 1.71101 1.85822 1.96753 2.26759 2.44989 3.01112 3.05902 3.14972 3.28194 3.71886 3.81715 3.85738 4.06922 4.13814 4.16981 4.27275 4.34066 4.39110 4.39991 4.46002 4.50229 4.59994 4.66966 4.83324 4.86492 4.89117 4.90835 5.03999 5.07811 5.08091 5.13921 5.23440 5.28623 5.36839 5.41304 5.63512 5.89307 6.05700 6.12885 6.15128 6.39202 6.62173 6.79271 6.86738 7.36954 7.59360 8.89929 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.012430 B = 0.003408 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.081409 B = 8213.512016 C = 9495.032029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.100 3.900 3 H 0.093 0.907 4 N -0.679 5.679 5 C 0.052 3.948 6 C 0.500 3.500 7 O -0.577 6.577 8 N -0.600 5.600 9 C 0.261 3.739 10 C -0.537 4.537 11 H 0.054 0.946 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.958 3.042 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.285 1.285 18 C 0.114 3.886 19 C -0.038 4.038 20 C 0.246 3.754 21 N -0.490 5.490 22 C -0.106 4.106 23 H 0.079 0.921 24 C -0.133 4.133 25 C 0.044 3.956 26 O -0.410 6.410 27 C 0.056 3.944 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.344 0.656 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.032 0.968 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 7.306 18.535 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.009 4.009 3 H 0.111 0.889 4 N -0.310 5.310 5 C -0.080 4.080 6 C 0.289 3.711 7 O -0.456 6.456 8 N -0.331 5.331 9 C 0.139 3.861 10 C -0.576 4.576 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.566 5.566 14 Si 0.783 3.217 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.212 1.212 18 C -0.010 4.010 19 C -0.079 4.079 20 C -0.071 4.071 21 N -0.168 5.168 22 C -0.125 4.125 23 H 0.098 0.902 24 C -0.170 4.170 25 C -0.031 4.031 26 O -0.330 6.330 27 C -0.021 4.021 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.095 0.905 33 H 0.144 0.856 34 H 0.050 0.950 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.906 8.432 18.661 20.683 hybrid contribution -1.243 -1.283 -1.462 2.308 sum -4.149 7.149 17.199 19.083 Atomic orbital electron populations 1.22542 0.96130 1.02695 1.02987 1.21541 0.93168 0.97800 0.88400 0.88891 1.60183 1.58670 1.09206 1.02981 1.21933 1.02167 0.95836 0.88074 1.21228 0.77849 0.87272 0.84764 1.90674 1.51479 1.18436 1.85041 1.48088 1.64800 1.10255 1.09974 1.18766 0.93717 0.91463 0.82126 1.21784 0.93977 1.33164 1.08692 0.92810 1.25732 0.98201 0.96564 0.98421 1.70036 1.21229 1.41457 1.23899 0.85513 0.79685 0.77930 0.78543 1.19157 1.20016 1.21166 1.21505 0.96031 0.78825 1.04676 1.19842 1.00594 0.79983 1.07512 1.29135 0.91892 0.94737 0.91348 1.81236 1.10254 1.14329 1.10959 1.22633 0.95859 1.00180 0.93817 0.90250 1.23079 0.95398 1.03496 0.95047 1.23528 0.90534 0.96246 0.92836 1.88356 1.25654 1.75501 1.43514 1.23245 0.89263 1.00952 0.88590 0.90436 0.92363 0.92517 0.83727 0.90461 0.85615 0.94991 0.97929 0.92640 0.89997 0.87541 0.84528 0.86354 0.90315 0.90354 0.89034 0.92082 0.90268 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.91 71.98 0.64 -1.75 16 2 C 0.10 1.50 1.96 44.92 0.09 1.59 16 3 H 0.09 1.20 7.79 -2.39 -0.02 1.18 16 4 N -0.68 -14.56 5.62 -495.57 -2.79 -17.35 16 5 C 0.05 1.08 4.52 85.56 0.39 1.47 16 6 C 0.50 17.01 7.71 87.66 0.68 17.69 16 7 O -0.58 -26.34 15.78 -3.04 -0.05 -26.39 16 8 N -0.60 -20.50 2.46 -826.14 -2.03 -22.53 16 9 C 0.26 12.33 5.16 85.63 0.44 12.78 16 10 C -0.54 -28.51 9.39 25.60 0.24 -28.27 16 11 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 12 C 0.01 0.54 5.46 84.66 0.46 1.00 16 13 N -0.93 -53.34 13.29 21.45 0.28 -53.05 16 14 Si 0.96 43.13 29.54 68.60 2.03 45.15 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 18 C 0.11 2.61 5.17 86.38 0.45 3.05 16 19 C -0.04 -0.65 6.03 28.79 0.17 -0.47 16 20 C 0.25 5.08 15.43 89.45 1.38 6.46 16 21 N -0.49 -13.10 18.53 20.00 0.37 -12.73 16 22 C -0.11 -1.67 2.74 -9.53 -0.03 -1.69 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 C -0.13 -2.26 6.38 32.05 0.20 -2.06 16 25 C 0.04 0.75 7.78 72.65 0.56 1.31 16 26 O -0.41 -8.28 11.36 -148.98 -1.69 -9.97 16 27 C 0.06 0.86 6.58 72.45 0.48 1.33 16 28 H 0.08 0.79 7.43 -2.39 -0.02 0.77 16 29 H 0.06 0.78 7.35 -2.39 -0.02 0.76 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.34 8.58 8.18 -89.70 -0.73 7.84 16 32 H 0.08 1.32 6.62 -2.39 -0.02 1.31 16 33 H 0.13 1.85 7.10 -2.39 -0.02 1.84 16 34 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 35 H 0.00 0.14 7.42 -2.39 -0.02 0.13 16 36 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 37 H 0.08 2.11 8.07 -2.39 -0.02 2.09 16 38 H 0.11 1.76 6.44 -2.39 -0.02 1.75 16 39 H 0.14 1.58 7.22 -2.39 -0.02 1.56 16 40 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.03 7.60 -2.39 -0.02 1.01 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -72.83 381.55 2.53 -70.30 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.24 Total: 14.12 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.16 Total: 12.45 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.16 Total: -105.67 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.74 Total: -36.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.83 2.53 -70.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337227079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.254 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds