Wall clock time and date at job start Fri Apr 10 2020 18:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 115.55937 * 2 1 4 4 C 1.53000 * 117.50306 * 145.68914 * 2 1 3 5 5 C 1.52993 * 117.50144 * 214.31470 * 2 1 3 6 6 H 1.09005 * 117.49621 * 145.01831 * 5 2 1 7 7 C 1.50700 * 117.51807 * 359.97438 * 5 2 1 8 8 O 1.21280 * 120.00117 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99690 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99555 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47161 * 175.79988 * 10 9 7 12 12 N 1.46900 * 112.84893 * 48.52406 * 11 10 9 13 13 C 1.46907 * 110.99563 * 61.42612 * 12 11 10 14 14 C 1.50701 * 109.46637 * 178.41099 * 13 12 11 15 15 O 1.21294 * 120.00217 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99661 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99616 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00334 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99415 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00684 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 59.99684 * 21 19 17 23 23 H 1.48506 * 109.47235 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46851 * 299.99927 * 21 19 17 25 25 C 1.53780 * 113.61030 * 277.22457 * 11 10 9 26 26 C 1.53786 * 87.07878 * 220.01704 * 25 11 10 27 27 C 1.53776 * 113.61440 * 179.72467 * 11 10 9 28 28 H 1.08999 * 109.47131 * 325.69436 * 1 2 3 29 29 H 1.08993 * 109.46986 * 85.70544 * 1 2 3 30 30 H 1.09011 * 109.46509 * 205.70238 * 1 2 3 31 31 H 1.08997 * 117.49581 * 0.02562 * 4 2 1 32 32 H 1.09000 * 117.49924 * 214.98143 * 4 2 1 33 33 H 0.96996 * 120.00295 * 359.97438 * 9 7 5 34 34 H 1.09000 * 109.47085 * 295.79883 * 10 9 7 35 35 H 1.09000 * 109.47043 * 55.80021 * 10 9 7 36 36 H 1.00893 * 111.00065 * 185.38276 * 12 11 10 37 37 H 1.08992 * 109.47296 * 298.40805 * 13 12 11 38 38 H 1.08995 * 109.46954 * 58.41326 * 13 12 11 39 39 H 0.96996 * 120.00068 * 0.02562 * 16 14 13 40 40 H 0.96989 * 120.00326 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.61826 * 334.56017 * 25 11 10 42 42 H 1.08996 * 113.61849 * 105.47018 * 25 11 10 43 43 H 1.09000 * 113.61233 * 270.88672 * 26 25 11 44 44 H 1.08996 * 113.61461 * 139.98053 * 26 25 11 45 45 H 1.08997 * 113.61040 * 254.52718 * 27 11 10 46 46 H 1.08996 * 113.61748 * 25.43466 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 3.1716 -0.8749 -1.2683 7 6 1.3725 -2.1410 -1.4606 8 8 0.1643 -2.0546 -1.4005 9 7 1.9426 -3.1495 -2.1495 10 6 1.1027 -4.1416 -2.8252 11 6 1.9889 -5.1080 -3.6138 12 7 3.1101 -5.6297 -2.8210 13 6 2.6258 -6.3880 -1.6597 14 6 3.8010 -6.9392 -0.8941 15 8 4.9309 -6.7214 -1.2778 16 7 3.5965 -7.6742 0.2170 17 6 4.6657 -8.1752 0.9138 18 1 5.6717 -7.9813 0.5721 19 6 4.4549 -8.9334 2.0589 20 7 3.2308 -9.1698 2.4744 21 14 5.9116 -9.6167 3.0080 22 1 6.7694 -8.4968 3.4719 23 1 5.4220 -10.3848 4.1809 24 1 6.7014 -10.5123 2.1251 25 6 2.4042 -4.5751 -4.9952 26 6 2.1837 -6.0020 -5.5247 27 6 1.2008 -6.1984 -4.3584 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0770 -1.0247 30 1 -0.3633 -0.9261 0.4458 31 1 1.6113 -1.8587 1.2679 32 1 3.1716 -0.8751 1.2682 33 1 2.9089 -3.2184 -2.1979 34 1 0.5290 -4.6975 -2.0837 35 1 0.4201 -3.6353 -3.5078 36 1 3.7242 -6.1928 -3.3900 37 1 2.0466 -5.7300 -1.0120 38 1 1.9958 -7.2099 -1.9995 39 1 2.6930 -7.8487 0.5236 40 1 3.0837 -9.6987 3.2740 41 1 1.7092 -3.8439 -5.4082 42 1 3.4426 -4.2473 -5.0428 43 1 3.0698 -6.6334 -5.4600 44 1 1.7096 -6.0353 -6.5056 45 1 1.2678 -7.1811 -3.8917 46 1 0.1769 -5.9111 -4.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754976461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:06 Heat of formation + Delta-G solvation = -29.487120 kcal Electronic energy + Delta-G solvation = -26068.943342 eV Core-core repulsion = 22380.807805 eV Total energy + Delta-G solvation = -3688.135538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43484 -39.58564 -38.00393 -36.61553 -34.34295 -34.06947 -32.93748 -31.22497 -29.07457 -27.91800 -26.67295 -25.77280 -24.34979 -23.78376 -22.03204 -21.01022 -19.95716 -19.29541 -18.66350 -17.92576 -17.07919 -16.43417 -16.20103 -15.46931 -15.35974 -15.17031 -14.62355 -14.45803 -14.24741 -14.14484 -13.75372 -13.48792 -13.21947 -12.97735 -12.65954 -12.63629 -12.50945 -12.25822 -12.19274 -11.90079 -11.55567 -11.50781 -11.40618 -11.05909 -10.84978 -10.71096 -10.46462 -10.32647 -10.26514 -10.22418 -10.12595 -9.52825 -9.46155 -8.89072 -8.52069 -8.17325 -7.99308 -6.43986 -3.85266 2.60667 3.17995 3.20399 3.24296 3.28345 3.79344 3.86695 3.99610 4.23824 4.44069 4.48965 4.60441 4.65031 4.73199 4.81230 4.84345 5.07782 5.12533 5.22148 5.29544 5.31400 5.55863 5.57799 5.60883 5.64631 5.71816 5.72437 5.76682 5.83167 5.87321 5.92851 5.98488 6.00036 6.06504 6.07904 6.12659 6.25974 6.44692 6.60552 7.14225 7.52393 7.54856 7.71358 8.02730 8.38224 8.57619 9.14683 9.50933 10.01714 10.73495 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010153 B = 0.003992 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.272131 B = 7012.265736 C = 9059.946296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.149 4.149 5 C -0.192 4.192 6 H 0.121 0.879 7 C 0.540 3.460 8 O -0.547 6.547 9 N -0.710 5.710 10 C 0.143 3.857 11 C 0.081 3.919 12 N -0.641 5.641 13 C 0.049 3.951 14 C 0.440 3.560 15 O -0.585 6.585 16 N -0.561 5.561 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.169 4.169 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.413 0.587 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.355 0.645 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.697 12.647 -10.500 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 H 0.126 0.874 4 C -0.186 4.186 5 C -0.213 4.213 6 H 0.139 0.861 7 C 0.327 3.673 8 O -0.425 6.425 9 N -0.362 5.362 10 C 0.019 3.981 11 C -0.012 4.012 12 N -0.273 5.273 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.470 6.470 16 N -0.197 5.197 17 C -0.431 4.431 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.166 4.166 26 C -0.180 4.180 27 C -0.209 4.209 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.759 13.290 -10.183 17.706 hybrid contribution 0.364 -1.529 0.256 1.592 sum -5.395 11.761 -9.928 16.309 Atomic orbital electron populations 1.21346 0.91620 1.01349 1.02355 1.22354 0.96480 0.93456 1.01807 0.87385 1.23085 1.03076 1.01557 0.90895 1.22258 1.01968 1.00995 0.96092 0.86087 1.19664 0.88002 0.81342 0.78290 1.90675 1.14590 1.75442 1.61817 1.45824 1.11477 1.26516 1.52357 1.21239 0.92349 0.88929 0.95597 1.22370 0.91661 0.95086 0.92084 1.60009 1.15203 1.42637 1.09464 1.21678 0.96785 0.96685 0.93159 1.19755 0.89825 0.83998 0.83872 1.90521 1.23977 1.62711 1.69766 1.41848 1.09758 1.45500 1.22619 1.19646 0.88914 1.28744 1.05780 0.87963 1.25263 0.97701 0.97425 0.97415 1.69600 1.19822 1.39716 1.25007 0.85926 0.80661 0.78990 0.78686 1.19853 1.20949 1.19913 1.23061 1.02603 0.96773 0.94137 1.22823 0.99672 0.97310 0.98182 1.23623 0.99388 1.00050 0.97862 0.93537 0.91549 0.91713 0.88135 0.87807 0.75057 0.91817 0.91069 0.82374 0.89557 0.93581 0.77475 0.91765 0.89555 0.90458 0.90006 0.91273 0.90986 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.43 37.16 0.31 -0.96 16 2 C -0.12 -1.29 6.41 -90.62 -0.58 -1.87 16 3 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.15 -1.65 9.88 -26.73 -0.26 -1.92 16 5 C -0.19 -2.20 6.19 -91.78 -0.57 -2.76 16 6 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.54 7.44 7.59 -10.98 -0.08 7.36 16 8 O -0.55 -8.88 13.11 5.56 0.07 -8.81 16 9 N -0.71 -9.05 5.44 -60.29 -0.33 -9.38 16 10 C 0.14 1.76 4.48 -4.04 -0.02 1.74 16 11 C 0.08 0.92 0.79 -130.79 -0.10 0.82 16 12 N -0.64 -9.28 5.33 -100.40 -0.53 -9.81 16 13 C 0.05 0.84 5.74 -4.97 -0.03 0.81 16 14 C 0.44 10.06 7.82 -10.98 -0.09 9.97 16 15 O -0.59 -15.25 15.74 5.55 0.09 -15.16 16 16 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 21 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.13 -1.24 7.37 -25.92 -0.19 -1.43 16 26 C -0.14 -1.34 7.74 -25.91 -0.20 -1.54 16 27 C -0.17 -1.75 7.17 -25.92 -0.19 -1.93 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.84 7.26 -51.93 -0.38 0.46 16 30 H 0.06 0.86 7.02 -51.92 -0.36 0.50 16 31 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.41 5.24 7.95 -40.82 -0.32 4.91 16 34 H 0.06 0.87 7.40 -51.93 -0.38 0.48 16 35 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.36 5.44 7.53 -39.30 -0.30 5.14 16 37 H 0.09 1.45 6.98 -51.93 -0.36 1.09 16 38 H 0.05 0.73 6.83 -51.93 -0.35 0.37 16 39 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.82 6.93 -51.93 -0.36 0.46 16 46 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -30.78 373.47 -8.92 -39.70 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -7.26 Total: 19.34 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.24 Total: 0.37 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.20 Total: -56.93 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.78 -8.92 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754976461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.218 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds