Wall clock time and date at job start Fri Apr 10 2020 18:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 115.55937 * 2 1 4 4 C 1.53000 * 117.50306 * 145.68914 * 2 1 3 5 5 C 1.52993 * 117.50144 * 214.31470 * 2 1 3 6 6 H 1.09005 * 117.49621 * 145.01831 * 5 2 1 7 7 C 1.50700 * 117.51807 * 359.97438 * 5 2 1 8 8 O 1.21280 * 120.00117 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99690 * 179.97438 * 7 5 2 10 10 C 1.46504 * 119.99555 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47161 * 175.79988 * 10 9 7 12 12 N 1.46900 * 112.84893 * 48.52406 * 11 10 9 13 13 C 1.46907 * 110.99563 * 61.42612 * 12 11 10 14 14 C 1.50701 * 109.46637 * 178.41099 * 13 12 11 15 15 O 1.21294 * 120.00217 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99661 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99616 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00334 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99415 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00684 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47264 * 59.99684 * 21 19 17 23 23 H 1.48506 * 109.47235 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46851 * 299.99927 * 21 19 17 25 25 C 1.53780 * 113.61030 * 277.22457 * 11 10 9 26 26 C 1.53786 * 87.07878 * 220.01704 * 25 11 10 27 27 C 1.53776 * 113.61440 * 179.72467 * 11 10 9 28 28 H 1.08999 * 109.47131 * 325.69436 * 1 2 3 29 29 H 1.08993 * 109.46986 * 85.70544 * 1 2 3 30 30 H 1.09011 * 109.46509 * 205.70238 * 1 2 3 31 31 H 1.08997 * 117.49581 * 0.02562 * 4 2 1 32 32 H 1.09000 * 117.49924 * 214.98143 * 4 2 1 33 33 H 0.96996 * 120.00295 * 359.97438 * 9 7 5 34 34 H 1.09000 * 109.47085 * 295.79883 * 10 9 7 35 35 H 1.09000 * 109.47043 * 55.80021 * 10 9 7 36 36 H 1.00893 * 111.00065 * 185.38276 * 12 11 10 37 37 H 1.08992 * 109.47296 * 298.40805 * 13 12 11 38 38 H 1.08995 * 109.46954 * 58.41326 * 13 12 11 39 39 H 0.96996 * 120.00068 * 0.02562 * 16 14 13 40 40 H 0.96989 * 120.00326 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.61826 * 334.56017 * 25 11 10 42 42 H 1.08996 * 113.61849 * 105.47018 * 25 11 10 43 43 H 1.09000 * 113.61233 * 270.88672 * 26 25 11 44 44 H 1.08996 * 113.61461 * 139.98053 * 26 25 11 45 45 H 1.08997 * 113.61040 * 254.52718 * 27 11 10 46 46 H 1.08996 * 113.61748 * 25.43466 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 3.1716 -0.8749 -1.2683 7 6 1.3725 -2.1410 -1.4606 8 8 0.1643 -2.0546 -1.4005 9 7 1.9426 -3.1495 -2.1495 10 6 1.1027 -4.1416 -2.8252 11 6 1.9889 -5.1080 -3.6138 12 7 3.1101 -5.6297 -2.8210 13 6 2.6258 -6.3880 -1.6597 14 6 3.8010 -6.9392 -0.8941 15 8 4.9309 -6.7214 -1.2778 16 7 3.5965 -7.6742 0.2170 17 6 4.6657 -8.1752 0.9138 18 1 5.6717 -7.9813 0.5721 19 6 4.4549 -8.9334 2.0589 20 7 3.2308 -9.1698 2.4744 21 14 5.9116 -9.6167 3.0080 22 1 6.7694 -8.4968 3.4719 23 1 5.4220 -10.3848 4.1809 24 1 6.7014 -10.5123 2.1251 25 6 2.4042 -4.5751 -4.9952 26 6 2.1837 -6.0020 -5.5247 27 6 1.2008 -6.1984 -4.3584 28 1 -0.3633 0.8489 0.5792 29 1 -0.3633 0.0770 -1.0247 30 1 -0.3633 -0.9261 0.4458 31 1 1.6113 -1.8587 1.2679 32 1 3.1716 -0.8751 1.2682 33 1 2.9089 -3.2184 -2.1979 34 1 0.5290 -4.6975 -2.0837 35 1 0.4201 -3.6353 -3.5078 36 1 3.7242 -6.1928 -3.3900 37 1 2.0466 -5.7300 -1.0120 38 1 1.9958 -7.2099 -1.9995 39 1 2.6930 -7.8487 0.5236 40 1 3.0837 -9.6987 3.2740 41 1 1.7092 -3.8439 -5.4082 42 1 3.4426 -4.2473 -5.0428 43 1 3.0698 -6.6334 -5.4600 44 1 1.7096 -6.0353 -6.5056 45 1 1.2678 -7.1811 -3.8917 46 1 0.1769 -5.9111 -4.5973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754976461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:05 Heat of formation + Delta-G solvation = -51.153134 kcal Electronic energy + Delta-G solvation = -26069.882851 eV Core-core repulsion = 22380.807805 eV Total energy + Delta-G solvation = -3689.075046 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46262 -40.64583 -39.77606 -37.55896 -36.03742 -35.37931 -34.28263 -33.23181 -30.04738 -28.94575 -28.17746 -26.72417 -25.89662 -24.90341 -22.94488 -21.91389 -21.09908 -20.96934 -19.92795 -19.64597 -18.06236 -17.86436 -17.28379 -16.85019 -16.49758 -16.37698 -16.14136 -15.87138 -15.63513 -15.51526 -14.88968 -14.74787 -14.33844 -14.11064 -13.97603 -13.80303 -13.55728 -13.51800 -13.28954 -13.14699 -13.06252 -12.90964 -12.50061 -12.43520 -12.36598 -12.13593 -11.70290 -11.58390 -11.50091 -11.19569 -11.15993 -11.03033 -10.51717 -10.36286 -10.02933 -9.95544 -9.40252 -8.47158 -5.96373 1.39306 1.41484 1.52389 1.56380 2.03047 2.20295 2.29118 2.82111 2.90097 3.19884 3.42655 3.55161 3.64432 3.72738 3.76965 3.90248 3.92388 3.96352 4.21785 4.25151 4.35838 4.44522 4.48480 4.50186 4.64926 4.69581 4.81307 4.83833 4.84915 4.90395 4.99118 5.05497 5.06066 5.12989 5.17586 5.19174 5.33155 5.40131 5.48842 5.60620 5.88493 6.07251 6.35047 6.57629 6.66017 7.10993 7.32552 7.54153 8.08272 8.69998 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010153 B = 0.003992 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.272131 B = 7012.265736 C = 9059.946296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.114 4.114 3 H 0.137 0.863 4 C -0.153 4.153 5 C -0.200 4.200 6 H 0.143 0.857 7 C 0.533 3.467 8 O -0.577 6.577 9 N -0.706 5.706 10 C 0.144 3.856 11 C 0.079 3.921 12 N -0.644 5.644 13 C 0.069 3.931 14 C 0.441 3.559 15 O -0.618 6.618 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.082 0.918 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.272 1.272 24 H -0.271 1.271 25 C -0.117 4.117 26 C -0.137 4.137 27 C -0.166 4.166 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.414 0.586 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.352 0.648 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.277 0.723 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.474 13.464 -11.202 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.133 4.133 3 H 0.155 0.845 4 C -0.190 4.190 5 C -0.221 4.221 6 H 0.161 0.839 7 C 0.320 3.680 8 O -0.458 6.458 9 N -0.357 5.357 10 C 0.020 3.980 11 C -0.013 4.013 12 N -0.276 5.276 13 C -0.064 4.064 14 C 0.228 3.772 15 O -0.504 6.504 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.100 0.900 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.155 4.155 26 C -0.174 4.174 27 C -0.206 4.206 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.251 0.749 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.173 0.827 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.227 0.773 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.549 14.107 -10.905 18.674 hybrid contribution 0.249 -1.755 0.424 1.823 sum -5.300 12.351 -10.481 17.044 Atomic orbital electron populations 1.21277 0.92665 1.00873 1.01566 1.22487 0.95715 0.94422 1.00648 0.84529 1.23112 1.03711 1.01544 0.90669 1.22373 1.02638 1.00920 0.96141 0.83923 1.20135 0.87937 0.81763 0.78116 1.90663 1.15935 1.76247 1.62922 1.45853 1.11505 1.26304 1.52026 1.21265 0.92479 0.88898 0.95362 1.22433 0.91006 0.95511 0.92399 1.59968 1.16498 1.41896 1.09267 1.21419 0.94088 0.97273 0.93574 1.20712 0.91004 0.82412 0.83082 1.90491 1.25997 1.63489 1.70415 1.41932 1.09285 1.46331 1.23408 1.19647 0.88854 1.30590 1.07237 0.90034 1.26046 1.00388 0.97086 0.97680 1.69671 1.21271 1.39901 1.25387 0.84997 0.77525 0.78340 0.77541 1.19599 1.19668 1.19567 1.23043 1.02838 0.97326 0.92305 1.22795 0.99146 0.96763 0.98717 1.23630 1.00357 0.98787 0.97824 0.91532 0.92865 0.94221 0.90199 0.85955 0.74932 0.93434 0.90195 0.82749 0.89213 0.91953 0.77265 0.91330 0.87966 0.90716 0.90738 0.89484 0.92124 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 8.43 71.98 0.61 -1.82 16 2 C -0.11 -2.23 6.41 -10.80 -0.07 -2.30 16 3 H 0.14 1.91 8.14 -2.38 -0.02 1.89 16 4 C -0.15 -3.27 9.88 30.59 0.30 -2.96 16 5 C -0.20 -4.34 6.19 -11.54 -0.07 -4.41 16 6 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 7 C 0.53 14.51 7.59 87.66 0.67 15.18 16 8 O -0.58 -18.96 13.11 -3.03 -0.04 -19.00 16 9 N -0.71 -17.55 5.44 -463.04 -2.52 -20.07 16 10 C 0.14 3.41 4.48 86.38 0.39 3.80 16 11 C 0.08 1.68 0.79 4.05 0.00 1.69 16 12 N -0.64 -18.23 5.33 -471.54 -2.51 -20.74 16 13 C 0.07 2.32 5.74 85.56 0.49 2.81 16 14 C 0.44 20.43 7.82 87.66 0.69 21.12 16 15 O -0.62 -32.75 15.74 -3.07 -0.05 -32.79 16 16 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 17 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 21 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C -0.12 -2.00 7.37 31.12 0.23 -1.77 16 26 C -0.14 -2.26 7.74 31.12 0.24 -2.02 16 27 C -0.17 -3.12 7.17 31.12 0.22 -2.89 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.34 7.26 -2.39 -0.02 1.32 16 30 H 0.04 1.08 7.02 -2.38 -0.02 1.07 16 31 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 32 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 10.16 7.95 -92.71 -0.74 9.42 16 34 H 0.05 1.28 7.40 -2.39 -0.02 1.26 16 35 H 0.08 1.77 7.94 -2.39 -0.02 1.75 16 36 H 0.35 10.58 7.53 -89.70 -0.68 9.90 16 37 H 0.09 3.01 6.98 -2.39 -0.02 2.99 16 38 H 0.06 1.92 6.83 -2.39 -0.02 1.91 16 39 H 0.39 19.47 7.90 -92.71 -0.73 18.74 16 40 H 0.28 14.13 8.31 -92.72 -0.77 13.36 16 41 H 0.10 1.47 7.96 -2.39 -0.02 1.45 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.37 7.71 -2.39 -0.02 1.35 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.30 6.93 -2.39 -0.02 1.28 16 46 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -67.14 373.47 -0.58 -67.72 By element: Atomic # 1 Polarization: 53.61 SS G_CDS: -1.13 Total: 52.49 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 4.97 Total: 8.25 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.37 Total: -121.33 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -0.09 Total: -51.79 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.14 -0.58 -67.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754976461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.568 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds