Wall clock time and date at job start Fri Apr 10 2020 18:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47043 * 2 1 4 4 C 1.50706 * 109.47072 * 240.00422 * 2 1 3 5 5 O 1.21237 * 119.99724 * 267.17380 * 4 2 1 6 6 N 1.34776 * 120.00100 * 87.17759 * 4 2 1 7 7 C 1.34775 * 119.99680 * 180.02562 * 6 4 2 8 8 O 1.21540 * 120.00253 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99680 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99907 * 179.97438 * 9 7 6 11 11 C 1.52996 * 117.50099 * 223.74164 * 10 9 7 12 12 C 1.53002 * 117.49890 * 155.08387 * 10 9 7 13 13 N 1.46900 * 109.47382 * 120.00296 * 2 1 3 14 14 C 1.46843 * 111.00136 * 182.97724 * 13 2 1 15 15 C 1.53039 * 109.52186 * 185.83516 * 14 13 2 16 16 C 1.53115 * 109.27865 * 300.82039 * 15 14 13 17 17 C 1.50707 * 109.52080 * 177.55994 * 16 15 14 18 18 H 1.08001 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00117 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99792 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00169 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47623 * 119.99802 * 21 19 17 24 24 H 1.48504 * 109.47107 * 239.99878 * 21 19 17 25 25 C 1.53116 * 109.16176 * 57.65669 * 16 15 14 26 26 C 1.46852 * 110.99471 * 307.18494 * 13 2 1 27 27 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47232 * 299.99802 * 1 2 3 29 29 H 1.09007 * 109.47216 * 59.99926 * 1 2 3 30 30 H 0.96996 * 120.00220 * 359.97438 * 6 4 2 31 31 H 0.96996 * 120.00220 * 359.97438 * 9 7 6 32 32 H 1.09000 * 115.55351 * 9.41629 * 10 9 7 33 33 H 1.08999 * 117.49659 * 0.02562 * 11 10 9 34 34 H 1.09003 * 117.50059 * 145.02112 * 11 10 9 35 35 H 1.09011 * 117.49727 * 214.98043 * 12 10 9 36 36 H 1.09001 * 117.49932 * 359.97438 * 12 10 9 37 37 H 1.09009 * 109.46223 * 65.82142 * 14 13 2 38 38 H 1.08999 * 109.45250 * 305.85040 * 14 13 2 39 39 H 1.08998 * 109.50179 * 180.87898 * 15 14 13 40 40 H 1.09000 * 109.50021 * 60.76507 * 15 14 13 41 41 H 1.09002 * 109.52680 * 297.74591 * 16 15 14 42 42 H 0.97004 * 119.99666 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.50514 * 62.28291 * 25 16 15 44 44 H 1.09001 * 109.50458 * 182.40107 * 25 16 15 45 45 H 1.08997 * 109.46674 * 294.17333 * 26 13 2 46 46 H 1.08998 * 109.46072 * 54.14931 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.2831 -1.8957 -1.1863 6 7 2.2027 -0.0279 -2.3802 7 6 2.6515 -0.6634 -3.4808 8 8 2.9029 -1.8517 -3.4364 9 7 2.8224 0.0191 -4.6303 10 6 3.3107 -0.6714 -5.8265 11 6 4.3847 0.0315 -6.6591 12 6 2.9512 -0.0691 -7.1862 13 7 2.0197 -0.6925 1.1994 14 6 3.4858 -0.6508 1.2694 15 6 3.9660 -1.5021 2.4470 16 6 3.3588 -0.9596 3.7437 17 6 3.7801 -1.8299 4.8997 18 1 4.4176 -2.6846 4.7279 19 6 3.3516 -1.5351 6.1766 20 7 2.5757 -0.4940 6.3859 21 14 3.8732 -2.6143 7.6093 22 1 4.7389 -3.7133 7.1116 23 1 4.6261 -1.7982 8.5954 24 1 2.6685 -3.1896 8.2598 25 6 1.8322 -0.9687 3.6261 26 6 1.4139 -0.1328 2.4144 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.0017 0.9203 -2.4158 31 1 2.6221 0.9675 -4.6657 32 1 3.3606 -1.7579 -5.7548 33 1 4.7283 1.0076 -6.3166 34 1 5.1410 -0.5925 -7.1354 35 1 2.7649 -0.7594 -8.0091 36 1 2.3510 0.8408 -7.1908 37 1 3.8136 0.3795 1.4086 38 1 3.9048 -1.0431 0.3428 39 1 5.0534 -1.4582 2.5082 40 1 3.6505 -2.5352 2.3017 41 1 3.7054 0.0605 3.9095 42 1 2.2746 -0.2864 7.2843 43 1 1.4831 -1.9935 3.4994 44 1 1.3950 -0.5439 4.5297 45 1 1.7513 0.8949 2.5482 46 1 0.3281 -0.1490 2.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541022444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:18 Heat of formation + Delta-G solvation = -28.994199 kcal Electronic energy + Delta-G solvation = -26007.920162 eV Core-core repulsion = 22319.806000 eV Total energy + Delta-G solvation = -3688.114163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31450 -39.33794 -37.98862 -36.97879 -34.74236 -34.29967 -32.83546 -32.03474 -29.88161 -29.45768 -25.81641 -25.13798 -23.04878 -22.84334 -22.00865 -21.61474 -20.98614 -20.28680 -19.00444 -18.63959 -17.26255 -16.52807 -16.41714 -16.03998 -15.66697 -15.00388 -14.78051 -14.53627 -14.42709 -14.20494 -13.61871 -13.22986 -13.14313 -12.79292 -12.73136 -12.54903 -12.08631 -12.06159 -11.91420 -11.80794 -11.49449 -11.19461 -10.96840 -10.92449 -10.87447 -10.74606 -10.38965 -10.19597 -10.13396 -9.97716 -9.56751 -9.34671 -9.16062 -8.89944 -8.65891 -8.25866 -7.81334 -5.94055 -3.98156 2.05003 2.08373 3.07045 3.33707 3.41682 3.47083 3.53790 3.54344 4.23670 4.31417 4.49452 4.49981 4.51794 4.54845 5.03021 5.07694 5.16608 5.28193 5.36488 5.44297 5.46626 5.61210 5.66373 5.78296 5.85752 5.91582 6.03585 6.10984 6.13676 6.17361 6.32682 6.36336 6.59930 6.67277 6.91664 7.09972 7.17969 7.26573 7.43699 7.60466 7.63180 7.84891 8.06440 8.09131 8.18010 8.20336 8.53302 9.05518 9.66016 11.12392 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.002601 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.155587 B =10763.854108 C =11249.900996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 H 0.057 0.943 4 C 0.518 3.482 5 O -0.436 6.436 6 N -0.694 5.694 7 C 0.698 3.302 8 O -0.527 6.527 9 N -0.713 5.713 10 C 0.097 3.903 11 C -0.194 4.194 12 C -0.189 4.189 13 N -0.514 5.514 14 C 0.058 3.942 15 C -0.104 4.104 16 C 0.047 3.953 17 C -0.506 4.506 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.104 4.104 26 C 0.056 3.944 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.407 0.593 31 H 0.398 0.602 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.023 0.977 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.258 0.742 43 H 0.046 0.954 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 9.100 -24.067 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 H 0.075 0.925 4 C 0.302 3.698 5 O -0.300 6.300 6 N -0.361 5.361 7 C 0.398 3.602 8 O -0.398 6.398 9 N -0.368 5.368 10 C -0.009 4.009 11 C -0.233 4.233 12 C -0.228 4.228 13 N -0.240 5.240 14 C -0.069 4.069 15 C -0.141 4.141 16 C 0.029 3.971 17 C -0.545 4.545 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.142 4.142 26 C -0.071 4.071 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.241 0.759 31 H 0.233 0.767 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.113 0.887 45 H 0.043 0.957 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.272 6.776 -23.801 24.962 hybrid contribution 0.338 1.559 0.674 1.731 sum -2.934 8.335 -23.127 24.758 Atomic orbital electron populations 1.21878 0.91738 1.03997 1.02572 1.21557 0.97371 0.95541 0.89802 0.92507 1.21014 0.77567 0.88086 0.83131 1.90846 1.41939 1.14443 1.82722 1.44342 1.65902 1.14801 1.11095 1.16087 0.78559 0.85536 0.80031 1.91080 1.52740 1.12741 1.83211 1.44598 1.70944 1.12282 1.09009 1.21486 1.00834 0.97498 0.81118 1.23478 0.92702 1.03126 1.04004 1.23425 0.98466 1.03641 0.97259 1.61842 1.07623 1.54207 1.00330 1.22196 0.86290 0.98329 1.00094 1.21644 0.98705 0.99233 0.94561 1.18705 0.91600 0.96140 0.90688 1.21262 1.29700 1.11842 0.91657 0.92660 1.24962 0.95177 0.95217 0.98738 1.69881 1.35262 1.27099 1.21097 0.86572 0.78379 0.80684 0.82581 1.19821 1.21203 1.21095 1.21681 0.99753 0.98102 0.94710 1.22429 0.97953 0.96768 0.89904 0.90742 0.90274 0.92208 0.75899 0.76747 0.84141 0.88427 0.87803 0.87707 0.88434 0.95866 0.92314 0.93153 0.92153 0.96157 0.93228 0.93559 0.88707 0.95703 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.71 37.16 0.32 -1.31 16 2 C 0.07 0.96 2.47 -68.86 -0.17 0.79 16 3 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.52 7.80 5.89 -10.98 -0.06 7.73 16 5 O -0.44 -8.99 14.19 -18.21 -0.26 -9.25 16 6 N -0.69 -7.43 5.24 -15.78 -0.08 -7.51 16 7 C 0.70 8.82 8.50 -86.92 -0.74 8.08 16 8 O -0.53 -9.64 14.31 -18.47 -0.26 -9.90 16 9 N -0.71 -5.67 5.57 -58.69 -0.33 -6.00 16 10 C 0.10 0.76 6.43 -67.93 -0.44 0.32 16 11 C -0.19 -1.10 10.46 -26.70 -0.28 -1.38 16 12 C -0.19 -0.95 10.46 -26.69 -0.28 -1.23 16 13 N -0.51 -9.38 4.22 -228.07 -0.96 -10.34 16 14 C 0.06 1.13 5.19 -3.84 -0.02 1.11 16 15 C -0.10 -2.33 5.32 -26.65 -0.14 -2.47 16 16 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 17 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 20 N -0.89 -25.44 11.37 55.43 0.63 -24.81 16 21 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 26 C 0.06 1.05 5.06 -3.83 -0.02 1.04 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.86 6.19 -51.93 -0.32 0.54 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.41 2.31 8.71 -40.82 -0.36 1.95 16 31 H 0.40 1.71 8.84 -40.82 -0.36 1.35 16 32 H 0.14 1.38 7.40 -51.93 -0.38 1.00 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.06 1.15 6.48 -51.93 -0.34 0.81 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 1.08 5.85 -51.93 -0.30 0.78 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -36.02 366.96 -10.73 -46.75 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.42 Total: 0.73 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.55 Total: -1.84 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.74 Total: -48.66 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.52 Total: -19.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.02 -10.73 -46.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.756 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds