Wall clock time and date at job start Fri Apr 10 2020 18:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47043 * 2 1 4 4 C 1.50706 * 109.47072 * 240.00422 * 2 1 3 5 5 O 1.21237 * 119.99724 * 267.17380 * 4 2 1 6 6 N 1.34776 * 120.00100 * 87.17759 * 4 2 1 7 7 C 1.34775 * 119.99680 * 180.02562 * 6 4 2 8 8 O 1.21540 * 120.00253 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99680 * 180.02562 * 7 6 4 10 10 C 1.46499 * 119.99907 * 179.97438 * 9 7 6 11 11 C 1.52996 * 117.50099 * 223.74164 * 10 9 7 12 12 C 1.53002 * 117.49890 * 155.08387 * 10 9 7 13 13 N 1.46900 * 109.47382 * 120.00296 * 2 1 3 14 14 C 1.46843 * 111.00136 * 182.97724 * 13 2 1 15 15 C 1.53039 * 109.52186 * 185.83516 * 14 13 2 16 16 C 1.53115 * 109.27865 * 300.82039 * 15 14 13 17 17 C 1.50707 * 109.52080 * 177.55994 * 16 15 14 18 18 H 1.08001 * 119.99746 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00117 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99792 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00169 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47623 * 119.99802 * 21 19 17 24 24 H 1.48504 * 109.47107 * 239.99878 * 21 19 17 25 25 C 1.53116 * 109.16176 * 57.65669 * 16 15 14 26 26 C 1.46852 * 110.99471 * 307.18494 * 13 2 1 27 27 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47232 * 299.99802 * 1 2 3 29 29 H 1.09007 * 109.47216 * 59.99926 * 1 2 3 30 30 H 0.96996 * 120.00220 * 359.97438 * 6 4 2 31 31 H 0.96996 * 120.00220 * 359.97438 * 9 7 6 32 32 H 1.09000 * 115.55351 * 9.41629 * 10 9 7 33 33 H 1.08999 * 117.49659 * 0.02562 * 11 10 9 34 34 H 1.09003 * 117.50059 * 145.02112 * 11 10 9 35 35 H 1.09011 * 117.49727 * 214.98043 * 12 10 9 36 36 H 1.09001 * 117.49932 * 359.97438 * 12 10 9 37 37 H 1.09009 * 109.46223 * 65.82142 * 14 13 2 38 38 H 1.08999 * 109.45250 * 305.85040 * 14 13 2 39 39 H 1.08998 * 109.50179 * 180.87898 * 15 14 13 40 40 H 1.09000 * 109.50021 * 60.76507 * 15 14 13 41 41 H 1.09002 * 109.52680 * 297.74591 * 16 15 14 42 42 H 0.97004 * 119.99666 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.50514 * 62.28291 * 25 16 15 44 44 H 1.09001 * 109.50458 * 182.40107 * 25 16 15 45 45 H 1.08997 * 109.46674 * 294.17333 * 26 13 2 46 46 H 1.08998 * 109.46072 * 54.14931 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.2831 -1.8957 -1.1863 6 7 2.2027 -0.0279 -2.3802 7 6 2.6515 -0.6634 -3.4808 8 8 2.9029 -1.8517 -3.4364 9 7 2.8224 0.0191 -4.6303 10 6 3.3107 -0.6714 -5.8265 11 6 4.3847 0.0315 -6.6591 12 6 2.9512 -0.0691 -7.1862 13 7 2.0197 -0.6925 1.1994 14 6 3.4858 -0.6508 1.2694 15 6 3.9660 -1.5021 2.4470 16 6 3.3588 -0.9596 3.7437 17 6 3.7801 -1.8299 4.8997 18 1 4.4176 -2.6846 4.7279 19 6 3.3516 -1.5351 6.1766 20 7 2.5757 -0.4940 6.3859 21 14 3.8732 -2.6143 7.6093 22 1 4.7389 -3.7133 7.1116 23 1 4.6261 -1.7982 8.5954 24 1 2.6685 -3.1896 8.2598 25 6 1.8322 -0.9687 3.6261 26 6 1.4139 -0.1328 2.4144 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 2.0017 0.9203 -2.4158 31 1 2.6221 0.9675 -4.6657 32 1 3.3606 -1.7579 -5.7548 33 1 4.7283 1.0076 -6.3166 34 1 5.1410 -0.5925 -7.1354 35 1 2.7649 -0.7594 -8.0091 36 1 2.3510 0.8408 -7.1908 37 1 3.8136 0.3795 1.4086 38 1 3.9048 -1.0431 0.3428 39 1 5.0534 -1.4582 2.5082 40 1 3.6505 -2.5352 2.3017 41 1 3.7054 0.0605 3.9095 42 1 2.2746 -0.2864 7.2843 43 1 1.4831 -1.9935 3.4994 44 1 1.3950 -0.5439 4.5297 45 1 1.7513 0.8949 2.5482 46 1 0.3281 -0.1490 2.3194 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541022444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:18 Heat of formation + Delta-G solvation = -55.378148 kcal Electronic energy + Delta-G solvation = -26009.064256 eV Core-core repulsion = 22319.806000 eV Total energy + Delta-G solvation = -3689.258257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37336 -40.49981 -39.20674 -37.91812 -36.10515 -35.75836 -33.95188 -33.50621 -31.57238 -30.95534 -27.47679 -26.45235 -24.29089 -23.69314 -23.25343 -22.73091 -22.04157 -21.39776 -20.42222 -19.92674 -18.49517 -18.30663 -17.29754 -17.21698 -16.97820 -16.43826 -15.99152 -15.79625 -15.48039 -15.28906 -15.06527 -14.79565 -14.46517 -14.39550 -14.08903 -13.68774 -13.51659 -13.34143 -12.88538 -12.71769 -12.61769 -12.58017 -12.53829 -12.36152 -12.19351 -12.05498 -12.02394 -11.89549 -11.46337 -11.36988 -11.28990 -10.91853 -10.68513 -10.56534 -10.36465 -9.81618 -9.19525 -8.08288 -6.20060 0.96915 1.17249 1.38946 1.41279 1.52686 2.11740 2.44055 2.68941 2.97647 3.00778 3.18479 3.58942 3.79692 3.99694 4.06117 4.06364 4.07922 4.11370 4.26509 4.42301 4.53667 4.63781 4.68969 4.75687 4.78538 4.79268 4.89790 4.94887 5.01167 5.07466 5.10582 5.18094 5.23084 5.26638 5.33495 5.38319 5.50847 5.56294 5.64135 5.99214 5.99922 6.21169 6.27246 6.42940 6.56025 6.89078 7.09060 7.30158 7.46721 8.96508 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.002601 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.155587 B =10763.854108 C =11249.900996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.099 0.901 4 C 0.522 3.478 5 O -0.500 6.500 6 N -0.672 5.672 7 C 0.693 3.307 8 O -0.589 6.589 9 N -0.687 5.687 10 C 0.060 3.940 11 C -0.184 4.184 12 C -0.164 4.164 13 N -0.537 5.537 14 C 0.071 3.929 15 C -0.098 4.098 16 C 0.047 3.953 17 C -0.535 4.535 18 H 0.042 0.958 19 C 0.016 3.984 20 N -0.912 5.912 21 Si 0.951 3.049 22 H -0.275 1.275 23 H -0.277 1.277 24 H -0.279 1.279 25 C -0.097 4.097 26 C 0.070 3.930 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.434 0.566 31 H 0.420 0.580 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.036 0.964 41 H -0.001 1.001 42 H 0.261 0.739 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 11.847 -25.846 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 H 0.116 0.884 4 C 0.308 3.692 5 O -0.369 6.369 6 N -0.340 5.340 7 C 0.394 3.606 8 O -0.465 6.465 9 N -0.343 5.343 10 C -0.046 4.046 11 C -0.223 4.223 12 C -0.202 4.202 13 N -0.263 5.263 14 C -0.057 4.057 15 C -0.136 4.136 16 C 0.029 3.971 17 C -0.573 4.573 18 H 0.061 0.939 19 C -0.183 4.183 20 N -0.552 5.552 21 Si 0.777 3.223 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.136 4.136 26 C -0.057 4.057 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.273 0.727 31 H 0.258 0.742 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.017 0.983 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.106 9.640 -25.638 27.697 hybrid contribution 0.611 0.733 1.135 1.483 sum -3.495 10.374 -24.503 26.837 Atomic orbital electron populations 1.21917 0.89562 1.03281 1.05086 1.21734 0.98958 0.96520 0.86879 0.88399 1.21327 0.76186 0.87329 0.84309 1.90837 1.44930 1.17291 1.83824 1.43940 1.64636 1.15909 1.09538 1.16333 0.78191 0.84977 0.81140 1.91052 1.55447 1.15765 1.84243 1.44352 1.69327 1.13058 1.07543 1.21527 1.04244 0.96579 0.82271 1.23553 0.93031 1.03163 1.02558 1.23519 0.97922 1.03867 0.94893 1.61632 1.06719 1.56194 1.01784 1.21961 0.87472 0.98215 0.98062 1.21504 0.98590 0.98484 0.95023 1.18649 0.92969 0.94359 0.91169 1.21575 1.30215 1.12191 0.93347 0.93938 1.25656 0.95161 0.96469 1.00980 1.69982 1.35505 1.27947 1.21764 0.85622 0.78129 0.79043 0.79548 1.19939 1.20274 1.20444 1.21446 0.98245 0.97497 0.96378 1.22190 0.99488 0.95798 0.88182 0.93092 0.89301 0.88148 0.72672 0.74169 0.87155 0.87167 0.87628 0.86982 0.86416 0.94266 0.92565 0.93254 0.94474 0.98305 0.92936 0.95875 0.91146 0.94766 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.71 71.98 0.63 -2.08 16 2 C 0.07 1.75 2.47 44.17 0.11 1.86 16 3 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 4 C 0.52 15.08 5.89 87.66 0.52 15.59 16 5 O -0.50 -21.14 14.19 19.86 0.28 -20.86 16 6 N -0.67 -12.86 5.24 -440.52 -2.31 -15.17 16 7 C 0.69 16.97 8.50 179.06 1.52 18.50 16 8 O -0.59 -22.39 14.31 18.92 0.27 -22.12 16 9 N -0.69 -9.59 5.57 -457.87 -2.55 -12.14 16 10 C 0.06 0.88 6.43 44.99 0.29 1.16 16 11 C -0.18 -1.67 10.46 30.62 0.32 -1.35 16 12 C -0.16 -1.18 10.46 30.62 0.32 -0.86 16 13 N -0.54 -19.06 4.22 -875.49 -3.69 -22.75 16 14 C 0.07 2.71 5.19 86.33 0.45 3.16 16 15 C -0.10 -4.56 5.32 30.65 0.16 -4.40 16 16 C 0.05 2.45 2.16 -11.46 -0.02 2.43 16 17 C -0.54 -31.02 8.56 25.60 0.22 -30.80 16 18 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 19 C 0.02 0.91 5.30 84.65 0.45 1.36 16 20 N -0.91 -52.60 11.37 21.45 0.24 -52.36 16 21 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 22 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.10 -4.69 5.12 30.65 0.16 -4.54 16 26 C 0.07 2.55 5.06 86.33 0.44 2.98 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.56 6.19 -2.39 -0.01 1.55 16 29 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.43 3.13 8.71 -92.71 -0.81 2.32 16 31 H 0.42 2.09 8.84 -92.71 -0.82 1.27 16 32 H 0.11 2.31 7.40 -2.39 -0.02 2.30 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.36 16 38 H 0.06 2.20 6.48 -2.39 -0.02 2.19 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 42 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 3.73 6.17 -2.39 -0.01 3.71 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 2.85 5.85 -2.39 -0.01 2.84 16 Total: -1.00 -84.45 366.96 -0.81 -85.26 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.63 Total: 10.06 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.55 Total: 3.01 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -8.31 Total: -102.43 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: 0.55 Total: -42.98 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -84.45 -0.81 -85.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541022444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.883 kcal (2) G-P(sol) polarization free energy of solvation -84.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds