Wall clock time and date at job start Fri Apr 10 2020 18:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99970 * 2 1 4 4 N 1.34774 * 120.00171 * 180.02562 * 2 1 3 5 5 C 1.47030 * 125.64597 * 359.95501 * 4 2 1 6 6 C 1.54330 * 107.26955 * 181.09611 * 5 4 2 7 7 C 1.55159 * 102.94163 * 22.19348 * 6 5 4 8 8 H 1.09001 * 111.00047 * 82.61372 * 7 6 5 9 9 N 1.46501 * 110.99963 * 206.42437 * 7 6 5 10 10 C 1.34780 * 119.99618 * 204.99993 * 9 7 6 11 11 O 1.21583 * 120.00069 * 355.01349 * 10 9 7 12 12 N 1.34778 * 119.99783 * 175.00954 * 10 9 7 13 13 C 1.46931 * 120.62667 * 184.94617 * 12 10 9 14 14 C 1.52759 * 109.00767 * 233.58621 * 13 12 10 15 15 C 1.53046 * 109.38379 * 305.59311 * 14 13 12 16 16 C 1.50692 * 109.44894 * 181.25664 * 15 14 13 17 17 H 1.08008 * 119.99758 * 239.93443 * 16 15 14 18 18 C 1.37873 * 120.00516 * 59.93375 * 16 15 14 19 19 N 1.31516 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47240 * 60.00064 * 20 18 16 22 22 H 1.48504 * 109.47156 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46896 * 300.00204 * 20 18 16 24 24 C 1.53041 * 109.53824 * 61.23756 * 15 14 13 25 25 C 1.46922 * 120.63202 * 5.22938 * 12 10 9 26 26 C 1.47425 * 125.65096 * 179.97438 * 4 2 1 27 27 H 1.09009 * 109.46681 * 240.00349 * 1 2 3 28 28 H 1.09001 * 109.46831 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.47400 * 120.00418 * 1 2 3 30 30 H 1.08999 * 109.87886 * 61.68016 * 5 4 2 31 31 H 1.09001 * 109.88494 * 300.51066 * 5 4 2 32 32 H 1.09001 * 110.71524 * 263.83193 * 6 5 4 33 33 H 1.08998 * 110.71628 * 140.55757 * 6 5 4 34 34 H 0.96994 * 120.00443 * 25.00471 * 9 7 6 35 35 H 1.09001 * 109.58672 * 353.42313 * 13 12 10 36 36 H 1.09003 * 109.58411 * 113.84818 * 13 12 10 37 37 H 1.09000 * 109.56759 * 185.55970 * 14 13 12 38 38 H 1.08998 * 109.38687 * 65.51594 * 14 13 12 39 39 H 1.09007 * 109.45470 * 301.22103 * 15 14 13 40 40 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49129 * 178.68717 * 24 15 14 42 42 H 1.08994 * 109.52569 * 58.60770 * 24 15 14 43 43 H 1.08998 * 109.58909 * 246.15432 * 25 12 10 44 44 H 1.09004 * 109.58387 * 6.43666 * 25 12 10 45 45 H 1.08997 * 110.36587 * 36.99780 * 26 4 2 46 46 H 1.08997 * 110.45999 * 274.71974 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7281 -3.5316 0.0272 7 6 3.9082 -2.7112 0.6118 8 1 3.8590 -2.6773 1.7002 9 7 5.1948 -3.2496 0.1636 10 6 6.3041 -3.0467 0.9017 11 8 6.2555 -2.3414 1.8909 12 7 7.4672 -3.6257 0.5434 13 6 8.6582 -3.5029 1.3951 14 6 9.8162 -2.9649 0.5566 15 6 10.0108 -3.8564 -0.6720 16 6 11.1726 -3.3449 -1.4841 17 1 11.0211 -3.0348 -2.5076 18 6 12.4289 -3.2728 -0.9208 19 7 12.6135 -3.6509 0.3252 20 14 13.8689 -2.6381 -1.9273 21 1 13.5917 -1.2464 -2.3650 22 1 15.1006 -2.6607 -1.0981 23 1 14.0592 -3.5033 -3.1192 24 6 8.7417 -3.8337 -1.5270 25 6 7.5700 -4.3863 -0.7094 26 6 3.6480 -1.3123 -0.0011 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8898 30 1 0.9782 -2.6437 -0.9021 31 1 0.9482 -2.6299 0.8833 32 1 2.9605 -3.8775 -0.9800 33 1 2.4825 -4.3712 0.6774 34 1 5.2484 -3.7521 -0.6643 35 1 8.4517 -2.8147 2.2149 36 1 8.9239 -4.4815 1.7949 37 1 10.7286 -2.9630 1.1529 38 1 9.5890 -1.9482 0.2360 39 1 10.2140 -4.8780 -0.3508 40 1 13.4975 -3.6006 0.7214 41 1 8.8894 -4.4503 -2.4137 42 1 8.5238 -2.8092 -1.8285 43 1 7.7452 -5.4384 -0.4848 44 1 6.6450 -4.2829 -1.2766 45 1 4.1060 -0.5376 0.6138 46 1 4.0350 -1.2659 -1.0190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541920559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:26 Heat of formation + Delta-G solvation = -61.546421 kcal Electronic energy + Delta-G solvation = -26053.846926 eV Core-core repulsion = 22364.321193 eV Total energy + Delta-G solvation = -3689.525733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54642 -39.73691 -37.84859 -36.75324 -34.35043 -33.49894 -31.55114 -30.92611 -30.15739 -30.01797 -28.03137 -26.08125 -23.87839 -23.03278 -22.39181 -21.37207 -20.29977 -19.63590 -18.96072 -17.75572 -17.18597 -16.94459 -16.30391 -15.71409 -15.59771 -15.00657 -14.69787 -14.58418 -14.09583 -13.88160 -13.69010 -13.32546 -13.12759 -13.05070 -12.85084 -12.79109 -12.63734 -12.38639 -12.28472 -12.15375 -11.86713 -11.73570 -11.15259 -11.12422 -10.91857 -10.68783 -10.44977 -10.14319 -10.06470 -9.83492 -9.56671 -9.21826 -9.17494 -8.93062 -8.88296 -8.36735 -7.94337 -6.01852 -4.08652 2.38929 2.54077 3.03539 3.30342 3.35626 3.37925 3.44147 4.01380 4.15281 4.25839 4.41356 4.53035 4.59739 4.85450 4.93525 4.97691 5.03196 5.12599 5.27865 5.31432 5.37622 5.46582 5.53916 5.68889 5.72254 5.79337 5.85232 5.91677 6.04234 6.24784 6.40667 6.46957 6.55088 6.60264 6.77633 6.96084 7.10238 7.22370 7.23005 7.45820 7.70469 7.91162 7.92799 8.05662 8.23475 8.40113 8.87088 8.94302 9.56467 11.03547 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002700 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.499818 B =10367.234909 C =10697.815949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.524 3.476 3 O -0.542 6.542 4 N -0.621 5.621 5 C 0.105 3.895 6 C -0.140 4.140 7 C 0.156 3.844 8 H 0.106 0.894 9 N -0.742 5.742 10 C 0.705 3.295 11 O -0.596 6.596 12 N -0.616 5.616 13 C 0.126 3.874 14 C -0.125 4.125 15 C 0.050 3.950 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.124 4.124 25 C 0.114 3.886 26 C 0.091 3.909 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.042 -3.406 -1.382 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.313 3.687 3 O -0.419 6.419 4 N -0.356 5.356 5 C -0.019 4.019 6 C -0.179 4.179 7 C 0.049 3.951 8 H 0.124 0.876 9 N -0.400 5.400 10 C 0.407 3.593 11 O -0.475 6.475 12 N -0.352 5.352 13 C 0.005 3.995 14 C -0.163 4.163 15 C 0.032 3.968 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.010 4.010 26 C -0.033 4.033 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.621 -2.289 -0.496 23.737 hybrid contribution 0.875 0.004 -1.093 1.400 sum -22.745 -2.285 -1.589 22.915 Atomic orbital electron populations 1.21892 0.91299 1.05452 1.04116 1.20523 0.90370 0.82010 0.75793 1.90762 1.70825 1.30611 1.49727 1.48464 1.07511 1.05806 1.73869 1.22017 0.96156 0.81535 1.02180 1.22958 0.94135 0.97960 1.02823 1.21778 0.81791 0.91256 1.00316 0.87625 1.45135 1.06602 1.60793 1.27494 1.15870 0.80397 0.80236 0.82813 1.90887 1.84729 1.42686 1.29172 1.47466 1.09545 1.54547 1.23660 1.21700 0.83747 1.00820 0.93270 1.21957 0.96834 0.98385 0.99154 1.18614 0.90398 0.95957 0.91856 1.21138 0.92723 1.43156 0.98240 0.92828 1.24959 0.98745 0.95264 0.94974 1.69829 1.22703 1.47813 1.12542 0.86680 0.81860 0.79468 0.80106 1.20334 1.21294 1.20346 1.22015 0.95869 1.00017 0.98355 1.21716 0.98885 0.95561 0.84798 1.22713 0.80029 0.98789 1.01757 0.89411 0.88939 0.89479 0.90858 0.90827 0.89787 0.88981 0.76571 0.90498 0.92499 0.87789 0.94333 0.95485 0.92872 0.92133 0.92879 0.91838 0.92353 0.89573 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.51 36.00 0.34 -0.69 16 2 C 0.52 5.94 7.96 -10.99 -0.09 5.85 16 3 O -0.54 -8.95 17.34 5.55 0.10 -8.86 16 4 N -0.62 -6.14 3.33 -170.50 -0.57 -6.71 16 5 C 0.10 0.59 6.49 -3.06 -0.02 0.57 16 6 C -0.14 -0.84 6.60 -24.89 -0.16 -1.00 16 7 C 0.16 1.64 3.39 -65.77 -0.22 1.42 16 8 H 0.11 1.30 7.61 -51.93 -0.40 0.90 16 9 N -0.74 -9.09 5.11 -56.56 -0.29 -9.38 16 10 C 0.71 12.14 8.29 -86.91 -0.72 11.42 16 11 O -0.60 -12.47 15.45 5.29 0.08 -12.38 16 12 N -0.62 -10.83 2.98 -178.76 -0.53 -11.36 16 13 C 0.13 2.52 6.41 -3.93 -0.03 2.50 16 14 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 15 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 16 C -0.51 -13.63 8.56 -34.45 -0.29 -13.93 16 17 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -24.73 11.31 55.43 0.63 -24.10 16 20 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.12 -2.34 5.30 -26.61 -0.14 -2.48 16 25 C 0.11 1.72 6.39 -3.71 -0.02 1.70 16 26 C 0.09 1.10 6.60 -2.52 -0.02 1.09 16 27 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.09 0.59 8.12 -51.93 -0.42 0.16 16 29 H 0.09 0.35 8.14 -51.94 -0.42 -0.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.42 8.00 -51.93 -0.42 0.00 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 3.91 6.06 -40.82 -0.25 3.67 16 35 H 0.08 1.59 6.99 -51.93 -0.36 1.22 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 45 H 0.09 1.33 8.04 -51.93 -0.42 0.91 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -33.94 364.62 -9.39 -43.33 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.48 Total: 2.01 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.80 Total: 5.99 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.76 Total: -51.56 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.18 Total: -21.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.94 -9.39 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds