Wall clock time and date at job start Fri Apr 10 2020 18:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21286 * 119.99970 * 2 1 4 4 N 1.34774 * 120.00171 * 180.02562 * 2 1 3 5 5 C 1.47030 * 125.64597 * 359.95501 * 4 2 1 6 6 C 1.54330 * 107.26955 * 181.09611 * 5 4 2 7 7 C 1.55159 * 102.94163 * 22.19348 * 6 5 4 8 8 H 1.09001 * 111.00047 * 82.61372 * 7 6 5 9 9 N 1.46501 * 110.99963 * 206.42437 * 7 6 5 10 10 C 1.34780 * 119.99618 * 204.99993 * 9 7 6 11 11 O 1.21583 * 120.00069 * 355.01349 * 10 9 7 12 12 N 1.34778 * 119.99783 * 175.00954 * 10 9 7 13 13 C 1.46931 * 120.62667 * 184.94617 * 12 10 9 14 14 C 1.52759 * 109.00767 * 233.58621 * 13 12 10 15 15 C 1.53046 * 109.38379 * 305.59311 * 14 13 12 16 16 C 1.50692 * 109.44894 * 181.25664 * 15 14 13 17 17 H 1.08008 * 119.99758 * 239.93443 * 16 15 14 18 18 C 1.37873 * 120.00516 * 59.93375 * 16 15 14 19 19 N 1.31516 * 119.99974 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00332 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47240 * 60.00064 * 20 18 16 22 22 H 1.48504 * 109.47156 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46896 * 300.00204 * 20 18 16 24 24 C 1.53041 * 109.53824 * 61.23756 * 15 14 13 25 25 C 1.46922 * 120.63202 * 5.22938 * 12 10 9 26 26 C 1.47425 * 125.65096 * 179.97438 * 4 2 1 27 27 H 1.09009 * 109.46681 * 240.00349 * 1 2 3 28 28 H 1.09001 * 109.46831 * 359.97438 * 1 2 3 29 29 H 1.08989 * 109.47400 * 120.00418 * 1 2 3 30 30 H 1.08999 * 109.87886 * 61.68016 * 5 4 2 31 31 H 1.09001 * 109.88494 * 300.51066 * 5 4 2 32 32 H 1.09001 * 110.71524 * 263.83193 * 6 5 4 33 33 H 1.08998 * 110.71628 * 140.55757 * 6 5 4 34 34 H 0.96994 * 120.00443 * 25.00471 * 9 7 6 35 35 H 1.09001 * 109.58672 * 353.42313 * 13 12 10 36 36 H 1.09003 * 109.58411 * 113.84818 * 13 12 10 37 37 H 1.09000 * 109.56759 * 185.55970 * 14 13 12 38 38 H 1.08998 * 109.38687 * 65.51594 * 14 13 12 39 39 H 1.09007 * 109.45470 * 301.22103 * 15 14 13 40 40 H 0.96998 * 120.00127 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49129 * 178.68717 * 24 15 14 42 42 H 1.08994 * 109.52569 * 58.60770 * 24 15 14 43 43 H 1.08998 * 109.58909 * 246.15432 * 25 12 10 44 44 H 1.09004 * 109.58387 * 6.43666 * 25 12 10 45 45 H 1.08997 * 110.36587 * 36.99780 * 26 4 2 46 46 H 1.08997 * 110.45999 * 274.71974 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5746 -2.5066 -0.0002 6 6 2.7281 -3.5316 0.0272 7 6 3.9082 -2.7112 0.6118 8 1 3.8590 -2.6773 1.7002 9 7 5.1948 -3.2496 0.1636 10 6 6.3041 -3.0467 0.9017 11 8 6.2555 -2.3414 1.8909 12 7 7.4672 -3.6257 0.5434 13 6 8.6582 -3.5029 1.3951 14 6 9.8162 -2.9649 0.5566 15 6 10.0108 -3.8564 -0.6720 16 6 11.1726 -3.3449 -1.4841 17 1 11.0211 -3.0348 -2.5076 18 6 12.4289 -3.2728 -0.9208 19 7 12.6135 -3.6509 0.3252 20 14 13.8689 -2.6381 -1.9273 21 1 13.5917 -1.2464 -2.3650 22 1 15.1006 -2.6607 -1.0981 23 1 14.0592 -3.5033 -3.1192 24 6 8.7417 -3.8337 -1.5270 25 6 7.5700 -4.3863 -0.7094 26 6 3.6480 -1.3123 -0.0011 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8898 30 1 0.9782 -2.6437 -0.9021 31 1 0.9482 -2.6299 0.8833 32 1 2.9605 -3.8775 -0.9800 33 1 2.4825 -4.3712 0.6774 34 1 5.2484 -3.7521 -0.6643 35 1 8.4517 -2.8147 2.2149 36 1 8.9239 -4.4815 1.7949 37 1 10.7286 -2.9630 1.1529 38 1 9.5890 -1.9482 0.2360 39 1 10.2140 -4.8780 -0.3508 40 1 13.4975 -3.6006 0.7214 41 1 8.8894 -4.4503 -2.4137 42 1 8.5238 -2.8092 -1.8285 43 1 7.7452 -5.4384 -0.4848 44 1 6.6450 -4.2829 -1.2766 45 1 4.1060 -0.5376 0.6138 46 1 4.0350 -1.2659 -1.0190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541920559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:21 Heat of formation + Delta-G solvation = -85.251645 kcal Electronic energy + Delta-G solvation = -26054.874862 eV Core-core repulsion = 22364.321193 eV Total energy + Delta-G solvation = -3690.553669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.63783 -40.83678 -38.95729 -38.14999 -35.59731 -35.18610 -33.00666 -32.25786 -31.42999 -30.74403 -28.93031 -27.82141 -25.03046 -24.36415 -23.84196 -22.36036 -21.70550 -20.58400 -20.27803 -19.10190 -18.34174 -18.08527 -17.77185 -16.79959 -16.66065 -16.54410 -16.18448 -15.66153 -15.25237 -15.01329 -14.91432 -14.65085 -14.49763 -14.24775 -14.02837 -13.82991 -13.78527 -13.37950 -13.30278 -13.02843 -12.99365 -12.80357 -12.73261 -12.58866 -12.50429 -12.16822 -11.93315 -11.81288 -11.43377 -11.35771 -11.06624 -10.94630 -10.79771 -10.40784 -10.31690 -9.73864 -9.41105 -8.07784 -6.21448 1.41106 1.42613 1.49184 1.50425 1.59385 2.04888 2.10962 2.43347 2.93750 3.18845 3.40752 3.57242 3.90859 3.98224 4.07042 4.19785 4.24382 4.31319 4.34373 4.48930 4.50159 4.60289 4.61570 4.63795 4.72514 4.78315 4.80996 4.90864 4.96936 4.99096 5.07684 5.15165 5.18420 5.19070 5.24064 5.46964 5.50071 5.52550 5.65330 5.98334 6.05017 6.12230 6.38723 6.48615 6.90063 6.98077 7.09541 7.46566 7.53715 8.95403 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.002700 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.499818 B =10367.234909 C =10697.815949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.510 3.490 3 O -0.612 6.612 4 N -0.619 5.619 5 C 0.099 3.901 6 C -0.124 4.124 7 C 0.154 3.846 8 H 0.085 0.915 9 N -0.720 5.720 10 C 0.702 3.298 11 O -0.639 6.639 12 N -0.620 5.620 13 C 0.139 3.861 14 C -0.113 4.113 15 C 0.046 3.954 16 C -0.533 4.533 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.268 1.268 24 C -0.117 4.117 25 C 0.118 3.882 26 C 0.091 3.909 27 H 0.114 0.886 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.007 0.993 40 H 0.260 0.740 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.036 0.964 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.198 -5.671 -3.166 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.302 3.698 3 O -0.494 6.494 4 N -0.353 5.353 5 C -0.022 4.022 6 C -0.162 4.162 7 C 0.047 3.953 8 H 0.103 0.897 9 N -0.378 5.378 10 C 0.403 3.597 11 O -0.521 6.521 12 N -0.356 5.356 13 C 0.016 3.984 14 C -0.152 4.152 15 C 0.027 3.973 16 C -0.571 4.571 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.555 5.555 20 Si 0.775 3.225 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.193 1.193 24 C -0.156 4.156 25 C -0.004 4.004 26 C -0.035 4.035 27 H 0.132 0.868 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.253 0.747 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.123 0.877 45 H 0.055 0.945 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.837 -4.626 -2.333 27.333 hybrid contribution 1.862 0.725 -0.536 2.069 sum -24.975 -3.902 -2.869 25.440 Atomic orbital electron populations 1.21906 0.86726 1.06073 1.06736 1.21615 0.92505 0.81285 0.74402 1.90728 1.72497 1.33134 1.53002 1.48606 1.06493 1.07520 1.72679 1.22408 0.96294 0.78539 1.04977 1.23000 0.91225 0.97871 1.04079 1.21855 0.82542 0.91495 0.99403 0.89713 1.44938 1.05768 1.59910 1.27226 1.16062 0.81196 0.79652 0.82773 1.90864 1.85458 1.44463 1.31346 1.47401 1.08926 1.55033 1.24226 1.21321 0.83788 1.00577 0.92709 1.21721 0.96893 0.97341 0.99281 1.18598 0.92093 0.94330 0.92234 1.21569 0.94046 1.42968 0.98532 0.93015 1.25701 1.01272 0.95684 0.95939 1.69964 1.23007 1.48743 1.13743 0.85760 0.78944 0.78840 0.78976 1.20354 1.21163 1.19310 1.21877 0.95024 1.00047 0.98630 1.21842 0.99412 0.95654 0.83470 1.22520 0.81910 0.98408 1.00620 0.86771 0.89494 0.86413 0.87580 0.88506 0.87683 0.86605 0.74672 0.91805 0.91702 0.90946 0.96595 0.97443 0.93063 0.90555 0.94046 0.90133 0.87726 0.94534 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.51 71.24 0.68 -0.79 16 2 C 0.51 11.25 7.96 87.66 0.70 11.94 16 3 O -0.61 -21.30 17.34 -3.05 -0.05 -21.35 16 4 N -0.62 -11.28 3.33 -811.72 -2.70 -13.98 16 5 C 0.10 0.66 6.49 86.73 0.56 1.23 16 6 C -0.12 -0.90 6.60 31.79 0.21 -0.69 16 7 C 0.15 2.98 3.39 46.39 0.16 3.14 16 8 H 0.08 2.05 7.61 -2.39 -0.02 2.03 16 9 N -0.72 -16.10 5.11 -451.13 -2.30 -18.41 16 10 C 0.70 23.79 8.29 179.05 1.49 25.28 16 11 O -0.64 -27.54 15.45 -3.98 -0.06 -27.60 16 12 N -0.62 -21.30 2.98 -837.74 -2.50 -23.79 16 13 C 0.14 5.70 6.41 86.22 0.55 6.25 16 14 C -0.11 -5.47 5.14 30.53 0.16 -5.31 16 15 C 0.05 2.19 2.07 -11.51 -0.02 2.16 16 16 C -0.53 -28.68 8.56 25.60 0.22 -28.46 16 17 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 18 C 0.01 0.70 5.30 84.65 0.45 1.15 16 19 N -0.91 -52.29 11.31 21.45 0.24 -52.05 16 20 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.12 -4.27 5.30 30.67 0.16 -4.11 16 25 C 0.12 3.26 6.39 86.36 0.55 3.81 16 26 C 0.09 2.21 6.60 86.86 0.57 2.78 16 27 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.09 0.95 8.12 -2.39 -0.02 0.94 16 29 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.40 8.00 -2.39 -0.02 0.39 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.41 6.46 6.06 -92.71 -0.56 5.90 16 35 H 0.06 2.76 6.99 -2.39 -0.02 2.75 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 3.95 6.03 -2.39 -0.01 3.93 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.10 1.93 5.64 -2.38 -0.01 1.92 16 45 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -81.72 364.62 1.50 -80.22 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.41 Total: 13.00 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.43 Total: 18.39 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -7.26 Total: -108.23 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.11 Total: -48.96 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.72 1.50 -80.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.033 kcal (2) G-P(sol) polarization free energy of solvation -81.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds