Wall clock time and date at job start Fri Apr 10 2020 18:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00031 * 2 1 4 4 N 1.34768 * 119.99967 * 179.97438 * 2 1 3 5 5 C 1.47473 * 125.63249 * 0.02562 * 4 2 1 6 6 C 1.54903 * 104.81451 * 204.05327 * 5 4 2 7 7 C 1.55160 * 101.61759 * 323.04367 * 6 5 4 8 8 H 1.09007 * 110.72005 * 277.12266 * 7 6 5 9 9 N 1.46492 * 110.72251 * 154.02624 * 7 6 5 10 10 C 1.34778 * 120.00380 * 154.99811 * 9 7 6 11 11 O 1.21589 * 119.99431 * 355.01780 * 10 9 7 12 12 N 1.34776 * 120.00265 * 175.01283 * 10 9 7 13 13 C 1.46928 * 120.63010 * 4.94655 * 12 10 9 14 14 C 1.53621 * 108.54291 * 126.36425 * 13 12 10 15 15 C 1.53046 * 109.24122 * 54.85919 * 14 13 12 16 16 C 1.50698 * 109.46138 * 178.49162 * 15 14 13 17 17 H 1.07995 * 120.00083 * 120.06335 * 16 15 14 18 18 C 1.37874 * 119.99871 * 300.06549 * 16 15 14 19 19 N 1.31520 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00340 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47354 * 89.99761 * 20 18 16 22 22 H 1.48495 * 109.47439 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.46691 * 330.00032 * 20 18 16 24 24 C 1.53047 * 109.53470 * 298.50813 * 15 14 13 25 25 C 1.46924 * 120.62855 * 185.22507 * 12 10 9 26 26 C 1.47024 * 125.64874 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47106 * 300.00549 * 1 2 3 29 29 H 1.09000 * 109.47280 * 60.00435 * 1 2 3 30 30 H 1.09000 * 110.34529 * 85.23200 * 5 4 2 31 31 H 1.09000 * 110.40335 * 322.90526 * 5 4 2 32 32 H 1.09006 * 111.00388 * 204.95594 * 6 5 4 33 33 H 1.08998 * 111.00927 * 81.13631 * 6 5 4 34 34 H 0.96998 * 119.99843 * 335.00081 * 9 7 6 35 35 H 1.08997 * 109.58803 * 246.20214 * 13 12 10 36 36 H 1.09005 * 109.58551 * 6.62830 * 13 12 10 37 37 H 1.09002 * 109.63813 * 294.86916 * 14 13 12 38 38 H 1.08997 * 109.45851 * 174.73961 * 14 13 12 39 39 H 1.08998 * 109.46325 * 58.52630 * 15 14 13 40 40 H 0.96995 * 120.00098 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49932 * 301.41519 * 24 15 14 42 42 H 1.09000 * 109.49759 * 181.31827 * 24 15 14 43 43 H 1.08993 * 109.59149 * 353.37137 * 25 12 10 44 44 H 1.08999 * 109.58702 * 113.80514 * 25 12 10 45 45 H 1.09007 * 109.88533 * 59.57819 * 26 4 2 46 46 H 1.08998 * 109.88294 * 298.40944 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.5724 -2.5105 0.0006 6 6 2.6544 -3.4354 0.6116 7 6 3.9549 -2.8232 0.0273 8 1 4.1383 -3.1969 -0.9802 9 7 5.0979 -3.1058 0.8988 10 6 6.3450 -3.1304 0.3882 11 8 6.5138 -3.0083 -0.8097 12 7 7.4048 -3.2902 1.2053 13 6 7.2125 -3.5469 2.6392 14 6 7.9912 -4.8160 3.0171 15 6 9.4544 -4.6533 2.5987 16 6 10.2309 -5.8808 3.0005 17 1 10.7321 -6.4726 2.2490 18 6 10.3014 -6.2481 4.3275 19 7 9.6906 -5.5277 5.2427 20 14 11.2646 -7.7692 4.8257 21 1 12.6719 -7.3921 5.1125 22 1 10.6544 -8.3654 6.0412 23 1 11.2330 -8.7594 3.7194 24 6 9.5357 -4.4727 1.0811 25 6 8.7744 -3.2052 0.6803 26 6 3.6439 -1.3119 0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.3390 -2.8209 -1.0179 31 1 0.6730 -2.5203 0.6164 32 1 2.5227 -4.4646 0.2775 33 1 2.6496 -3.3764 1.7000 34 1 4.9573 -3.2752 1.8435 35 1 7.5862 -2.7004 3.2153 36 1 6.1521 -3.6922 2.8454 37 1 7.5600 -5.6764 2.5052 38 1 7.9359 -4.9686 4.0949 39 1 9.8779 -3.7784 3.0917 40 1 9.7399 -5.7863 6.1762 41 1 9.0899 -5.3362 0.5875 42 1 10.5795 -4.3803 0.7812 43 1 8.7449 -3.1250 -0.4063 44 1 9.2729 -2.3314 1.0999 45 1 4.0636 -0.8316 0.8851 46 1 4.0612 -0.8633 -0.9004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541920560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:33 Heat of formation + Delta-G solvation = -60.563032 kcal Electronic energy + Delta-G solvation = -26055.100640 eV Core-core repulsion = 22365.617549 eV Total energy + Delta-G solvation = -3689.483090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.56316 -39.74169 -37.84867 -36.73485 -34.33448 -33.50421 -31.69711 -30.74890 -30.20205 -29.99408 -28.04188 -26.07874 -23.92877 -23.00096 -22.41157 -21.36267 -20.28430 -19.61578 -18.92368 -17.76029 -17.27852 -16.91944 -16.27448 -15.84885 -15.59699 -15.04921 -14.68534 -14.52208 -14.23222 -13.87831 -13.58479 -13.25603 -13.17193 -12.98644 -12.84841 -12.79304 -12.62166 -12.43332 -12.25064 -12.16381 -11.82239 -11.58961 -11.36805 -11.10150 -10.97386 -10.65282 -10.40734 -10.19532 -10.15609 -9.81238 -9.59406 -9.18255 -9.12621 -8.96817 -8.93554 -8.40312 -7.94956 -6.05959 -4.11890 2.36940 2.55927 3.01839 3.26166 3.33292 3.36833 3.44457 4.04549 4.14680 4.21642 4.38622 4.54923 4.68269 4.85417 4.90065 4.99309 5.06417 5.10683 5.23331 5.44548 5.45483 5.49457 5.54052 5.66568 5.75901 5.81780 5.91800 5.95634 6.05109 6.16183 6.22212 6.44628 6.56219 6.65569 6.81855 6.97024 7.10887 7.18452 7.20542 7.39568 7.64328 7.89095 7.89635 8.00448 8.23363 8.37862 8.86403 8.91727 9.53332 10.99496 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.002668 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.122058 B =10490.847994 C =10832.088042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.546 6.546 4 N -0.619 5.619 5 C 0.101 3.899 6 C -0.142 4.142 7 C 0.156 3.844 8 H 0.108 0.892 9 N -0.742 5.742 10 C 0.707 3.293 11 O -0.602 6.602 12 N -0.617 5.617 13 C 0.109 3.891 14 C -0.122 4.122 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.129 3.871 26 C 0.093 3.907 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.103 0.897 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.961 4.873 -6.807 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.313 3.687 3 O -0.423 6.423 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.180 4.180 7 C 0.048 3.952 8 H 0.126 0.874 9 N -0.400 5.400 10 C 0.408 3.592 11 O -0.482 6.482 12 N -0.352 5.352 13 C -0.013 4.013 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.162 4.162 25 C 0.006 3.994 26 C -0.032 4.032 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.237 0.763 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.549 5.616 -7.472 20.772 hybrid contribution 0.426 -1.021 0.971 1.472 sum -18.123 4.595 -6.501 19.794 Atomic orbital electron populations 1.21883 0.91321 1.04367 1.05313 1.20537 0.90353 0.82023 0.75753 1.90750 1.70723 1.30714 1.50142 1.48566 1.07387 1.05954 1.73579 1.22375 0.96834 0.81547 1.01477 1.23117 0.93406 0.99844 1.01679 1.21671 0.84604 0.92708 0.96180 0.87387 1.45190 1.04785 1.77691 1.12314 1.15852 0.80531 0.77690 0.85086 1.90861 1.84797 1.59126 1.13381 1.47429 1.05312 1.73713 1.08779 1.22001 0.99026 1.00674 0.79605 1.22090 0.97079 0.92593 1.04342 1.18627 0.92148 0.97258 0.88951 1.21216 1.31055 1.10244 0.92376 0.92680 1.24961 0.95569 0.96799 0.96673 1.69833 1.43396 1.38936 1.01009 0.86616 0.80198 0.83310 0.78011 1.20704 1.21276 1.19990 1.22025 0.98450 0.95439 1.00315 1.21594 0.79743 0.98851 0.99176 1.22460 0.80141 0.97379 1.03172 0.90392 0.88715 0.88673 0.90595 0.89826 0.88680 0.89772 0.76338 0.91912 0.92573 0.94236 0.87846 0.95453 0.92998 0.92940 0.92122 0.90210 0.92386 0.90902 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.19 36.00 0.37 -0.65 16 2 C 0.52 5.78 7.96 -10.99 -0.09 5.69 16 3 O -0.55 -8.72 17.43 5.55 0.10 -8.63 16 4 N -0.62 -6.04 3.33 -170.48 -0.57 -6.61 16 5 C 0.10 0.59 6.39 -2.51 -0.02 0.58 16 6 C -0.14 -0.96 6.71 -24.58 -0.16 -1.12 16 7 C 0.16 1.66 3.35 -66.10 -0.22 1.44 16 8 H 0.11 1.30 7.48 -51.92 -0.39 0.91 16 9 N -0.74 -9.59 5.02 -56.88 -0.29 -9.87 16 10 C 0.71 12.19 8.30 -86.92 -0.72 11.46 16 11 O -0.60 -12.16 15.38 5.29 0.08 -12.08 16 12 N -0.62 -10.91 2.97 -178.23 -0.53 -11.44 16 13 C 0.11 1.87 6.42 -3.49 -0.02 1.85 16 14 C -0.12 -2.61 5.17 -26.38 -0.14 -2.75 16 15 C 0.05 1.14 2.06 -91.72 -0.19 0.95 16 16 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 19 N -0.89 -24.07 11.30 55.43 0.63 -23.44 16 20 Si 0.89 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.12 -2.52 5.30 -26.60 -0.14 -2.66 16 25 C 0.13 2.36 6.44 -3.71 -0.02 2.34 16 26 C 0.09 1.10 6.62 -3.06 -0.02 1.08 16 27 H 0.08 0.28 6.08 -51.93 -0.32 -0.04 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.31 6.95 -51.93 -0.36 -0.05 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.54 8.01 -51.93 -0.42 0.12 16 34 H 0.40 4.50 6.05 -40.82 -0.25 4.25 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.79 5.64 -51.93 -0.29 0.49 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.46 6.03 -51.93 -0.31 2.14 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.97 8.03 -51.92 -0.42 0.55 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -32.89 361.94 -9.22 -42.11 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.31 Total: 2.91 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.77 Total: 6.00 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.75 Total: -51.36 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.18 Total: -20.70 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.89 -9.22 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.454 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds