Wall clock time and date at job start Fri Apr 10 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21287 * 120.00031 * 2 1 4 4 N 1.34768 * 119.99967 * 179.97438 * 2 1 3 5 5 C 1.47473 * 125.63249 * 0.02562 * 4 2 1 6 6 C 1.54903 * 104.81451 * 204.05327 * 5 4 2 7 7 C 1.55160 * 101.61759 * 323.04367 * 6 5 4 8 8 H 1.09007 * 110.72005 * 277.12266 * 7 6 5 9 9 N 1.46492 * 110.72251 * 154.02624 * 7 6 5 10 10 C 1.34778 * 120.00380 * 154.99811 * 9 7 6 11 11 O 1.21589 * 119.99431 * 355.01780 * 10 9 7 12 12 N 1.34776 * 120.00265 * 175.01283 * 10 9 7 13 13 C 1.46928 * 120.63010 * 4.94655 * 12 10 9 14 14 C 1.53621 * 108.54291 * 126.36425 * 13 12 10 15 15 C 1.53046 * 109.24122 * 54.85919 * 14 13 12 16 16 C 1.50698 * 109.46138 * 178.49162 * 15 14 13 17 17 H 1.07995 * 120.00083 * 120.06335 * 16 15 14 18 18 C 1.37874 * 119.99871 * 300.06549 * 16 15 14 19 19 N 1.31520 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00340 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47354 * 89.99761 * 20 18 16 22 22 H 1.48495 * 109.47439 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.46691 * 330.00032 * 20 18 16 24 24 C 1.53047 * 109.53470 * 298.50813 * 15 14 13 25 25 C 1.46924 * 120.62855 * 185.22507 * 12 10 9 26 26 C 1.47024 * 125.64874 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47034 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47106 * 300.00549 * 1 2 3 29 29 H 1.09000 * 109.47280 * 60.00435 * 1 2 3 30 30 H 1.09000 * 110.34529 * 85.23200 * 5 4 2 31 31 H 1.09000 * 110.40335 * 322.90526 * 5 4 2 32 32 H 1.09006 * 111.00388 * 204.95594 * 6 5 4 33 33 H 1.08998 * 111.00927 * 81.13631 * 6 5 4 34 34 H 0.96998 * 119.99843 * 335.00081 * 9 7 6 35 35 H 1.08997 * 109.58803 * 246.20214 * 13 12 10 36 36 H 1.09005 * 109.58551 * 6.62830 * 13 12 10 37 37 H 1.09002 * 109.63813 * 294.86916 * 14 13 12 38 38 H 1.08997 * 109.45851 * 174.73961 * 14 13 12 39 39 H 1.08998 * 109.46325 * 58.52630 * 15 14 13 40 40 H 0.96995 * 120.00098 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.49932 * 301.41519 * 24 15 14 42 42 H 1.09000 * 109.49759 * 181.31827 * 24 15 14 43 43 H 1.08993 * 109.59149 * 353.37137 * 25 12 10 44 44 H 1.08999 * 109.58702 * 113.80514 * 25 12 10 45 45 H 1.09007 * 109.88533 * 59.57819 * 26 4 2 46 46 H 1.08998 * 109.88294 * 298.40944 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 0.0005 5 6 1.5724 -2.5105 0.0006 6 6 2.6544 -3.4354 0.6116 7 6 3.9549 -2.8232 0.0273 8 1 4.1383 -3.1969 -0.9802 9 7 5.0979 -3.1058 0.8988 10 6 6.3450 -3.1304 0.3882 11 8 6.5138 -3.0083 -0.8097 12 7 7.4048 -3.2902 1.2053 13 6 7.2125 -3.5469 2.6392 14 6 7.9912 -4.8160 3.0171 15 6 9.4544 -4.6533 2.5987 16 6 10.2309 -5.8808 3.0005 17 1 10.7321 -6.4726 2.2490 18 6 10.3014 -6.2481 4.3275 19 7 9.6906 -5.5277 5.2427 20 14 11.2646 -7.7692 4.8257 21 1 12.6719 -7.3921 5.1125 22 1 10.6544 -8.3654 6.0412 23 1 11.2330 -8.7594 3.7194 24 6 9.5357 -4.4727 1.0811 25 6 8.7744 -3.2052 0.6803 26 6 3.6439 -1.3119 0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.3390 -2.8209 -1.0179 31 1 0.6730 -2.5203 0.6164 32 1 2.5227 -4.4646 0.2775 33 1 2.6496 -3.3764 1.7000 34 1 4.9573 -3.2752 1.8435 35 1 7.5862 -2.7004 3.2153 36 1 6.1521 -3.6922 2.8454 37 1 7.5600 -5.6764 2.5052 38 1 7.9359 -4.9686 4.0949 39 1 9.8779 -3.7784 3.0917 40 1 9.7399 -5.7863 6.1762 41 1 9.0899 -5.3362 0.5875 42 1 10.5795 -4.3803 0.7812 43 1 8.7449 -3.1250 -0.4063 44 1 9.2729 -2.3314 1.0999 45 1 4.0636 -0.8316 0.8851 46 1 4.0612 -0.8633 -0.9004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541920560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:31 Heat of formation + Delta-G solvation = -82.488573 kcal Electronic energy + Delta-G solvation = -26056.051402 eV Core-core repulsion = 22365.617549 eV Total energy + Delta-G solvation = -3690.433853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.65045 -40.84353 -38.95375 -38.13315 -35.53743 -35.22106 -33.13528 -31.99555 -31.48260 -30.82220 -28.93409 -27.79530 -25.05912 -24.31860 -23.91000 -22.36752 -21.66864 -20.60557 -20.20100 -19.13484 -18.29666 -18.14142 -17.76319 -17.01515 -16.55400 -16.43500 -16.30669 -15.65593 -15.30951 -15.08839 -14.89187 -14.55100 -14.50178 -14.24985 -14.10544 -13.80722 -13.59403 -13.39334 -13.22148 -13.11768 -12.96352 -12.82882 -12.72155 -12.68428 -12.44179 -12.13993 -11.97850 -11.81467 -11.48162 -11.25701 -11.05934 -10.98892 -10.78126 -10.39183 -10.29640 -9.76978 -9.42782 -8.07161 -6.20035 1.41702 1.44118 1.52479 1.53133 1.58746 2.00383 2.12523 2.44825 2.90614 3.19369 3.41198 3.50161 3.90422 4.01922 4.07273 4.16049 4.22281 4.31983 4.35005 4.47177 4.47523 4.57929 4.60052 4.63849 4.68746 4.73656 4.77040 4.88337 4.97449 4.99833 5.06733 5.07870 5.20224 5.22013 5.24428 5.43956 5.48754 5.52607 5.66405 5.99314 6.03405 6.14843 6.40684 6.47244 6.89147 6.93444 7.08543 7.47549 7.51910 8.96124 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.002668 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.122058 B =10490.847994 C =10832.088042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.513 3.487 3 O -0.609 6.609 4 N -0.617 5.617 5 C 0.099 3.901 6 C -0.130 4.130 7 C 0.154 3.846 8 H 0.095 0.905 9 N -0.726 5.726 10 C 0.704 3.296 11 O -0.634 6.634 12 N -0.621 5.621 13 C 0.121 3.879 14 C -0.112 4.112 15 C 0.045 3.955 16 C -0.534 4.534 17 H 0.046 0.954 18 C 0.018 3.982 19 N -0.911 5.911 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.281 1.281 23 H -0.274 1.274 24 C -0.113 4.113 25 C 0.135 3.865 26 C 0.096 3.904 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.029 0.971 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.262 0.738 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 3.757 -6.526 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.304 3.696 3 O -0.491 6.491 4 N -0.352 5.352 5 C -0.023 4.023 6 C -0.168 4.168 7 C 0.047 3.953 8 H 0.113 0.887 9 N -0.384 5.384 10 C 0.405 3.595 11 O -0.516 6.516 12 N -0.357 5.357 13 C -0.002 4.002 14 C -0.151 4.151 15 C 0.026 3.974 16 C -0.572 4.572 17 H 0.065 0.935 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.774 3.226 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.198 1.198 24 C -0.151 4.151 25 C 0.012 3.988 26 C -0.030 4.030 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.249 0.751 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.228 4.461 -7.176 22.848 hybrid contribution 1.264 -0.674 0.860 1.671 sum -19.965 3.787 -6.315 21.279 Atomic orbital electron populations 1.21915 0.86915 1.06809 1.06100 1.21579 0.92388 0.81258 0.74332 1.90717 1.72316 1.33022 1.53085 1.48707 1.06428 1.07524 1.72501 1.22714 0.97422 0.78759 1.03375 1.23156 0.90566 1.00826 1.02232 1.21785 0.85597 0.92179 0.95723 0.88717 1.45106 1.03889 1.76343 1.13094 1.16018 0.81445 0.77427 0.84570 1.90840 1.85421 1.60524 1.14807 1.47416 1.05310 1.74001 1.08975 1.21869 1.00598 0.98469 0.79242 1.21842 0.96324 0.94368 1.02578 1.18609 0.93070 0.95092 0.90600 1.21542 1.31728 1.11298 0.92612 0.93536 1.25616 0.96445 0.99283 0.96730 1.69939 1.44011 1.39990 1.01144 0.85717 0.78927 0.80276 0.77663 1.20489 1.20698 1.19844 1.21865 0.99017 0.96130 0.98127 1.21461 0.80197 0.97960 0.99222 1.22232 0.82000 0.97900 1.00847 0.87088 0.87803 0.87865 0.88789 0.86276 0.86583 0.88693 0.75128 0.91737 0.88915 0.95200 0.90153 0.97926 0.92922 0.93977 0.91852 0.90220 0.91486 0.92779 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.19 71.24 0.73 -0.70 16 2 C 0.51 10.77 7.96 87.66 0.70 11.47 16 3 O -0.61 -20.04 17.43 -3.05 -0.05 -20.10 16 4 N -0.62 -11.05 3.33 -811.67 -2.70 -13.75 16 5 C 0.10 0.76 6.39 86.84 0.55 1.32 16 6 C -0.13 -1.27 6.71 31.99 0.21 -1.05 16 7 C 0.15 3.07 3.35 46.18 0.15 3.23 16 8 H 0.09 2.21 7.48 -2.38 -0.02 2.19 16 9 N -0.73 -17.71 5.02 -452.14 -2.27 -19.98 16 10 C 0.70 23.82 8.30 179.05 1.49 25.30 16 11 O -0.63 -25.67 15.38 -4.00 -0.06 -25.73 16 12 N -0.62 -21.61 2.97 -836.06 -2.48 -24.09 16 13 C 0.12 3.99 6.42 86.51 0.56 4.55 16 14 C -0.11 -4.80 5.17 30.82 0.16 -4.64 16 15 C 0.04 2.13 2.06 -11.51 -0.02 2.11 16 16 C -0.53 -28.48 8.56 25.60 0.22 -28.26 16 17 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 18 C 0.02 0.97 5.30 84.65 0.45 1.42 16 19 N -0.91 -49.48 11.30 21.45 0.24 -49.24 16 20 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.11 -4.64 5.30 30.68 0.16 -4.48 16 25 C 0.13 4.92 6.44 86.36 0.56 5.48 16 26 C 0.10 2.27 6.62 86.73 0.57 2.84 16 27 H 0.11 0.23 6.08 -2.39 -0.01 0.22 16 28 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.12 0.18 6.95 -2.39 -0.02 0.16 16 32 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 0.79 8.01 -2.39 -0.02 0.77 16 34 H 0.41 8.20 6.05 -92.71 -0.56 7.64 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 2.37 5.64 -2.38 -0.01 2.36 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 3.84 6.03 -2.39 -0.01 3.83 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.08 2.94 6.99 -2.39 -0.02 2.92 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.47 8.03 -2.38 -0.02 1.45 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -75.11 361.94 1.61 -73.50 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.42 Total: 16.46 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.48 Total: 18.58 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -7.21 Total: -107.06 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.11 Total: -45.82 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -75.11 1.61 -73.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541920560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.991 kcal (2) G-P(sol) polarization free energy of solvation -75.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds