Wall clock time and date at job start Fri Apr 10 2020 18:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47377 * 2 1 4 4 C 1.53001 * 109.46836 * 119.99886 * 2 1 3 5 5 C 1.50706 * 109.47113 * 183.57740 * 4 2 1 6 6 H 1.08000 * 120.00082 * 5.07905 * 5 4 2 7 7 C 1.37878 * 119.99781 * 185.08599 * 5 4 2 8 8 N 1.31512 * 120.00352 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99580 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46804 * 90.00100 * 9 7 5 11 11 H 1.48497 * 109.46967 * 209.99975 * 9 7 5 12 12 H 1.48497 * 109.47266 * 330.00042 * 9 7 5 13 13 N 1.46902 * 109.47426 * 239.99889 * 2 1 3 14 14 C 1.46850 * 110.99956 * 308.74516 * 13 2 1 15 15 C 1.53033 * 109.52252 * 185.83910 * 14 13 2 16 16 C 1.53123 * 109.27664 * 300.82182 * 15 14 13 17 17 C 1.52999 * 109.52000 * 177.56133 * 16 15 14 18 18 C 1.53001 * 110.53613 * 305.69901 * 17 16 15 19 19 N 1.47309 * 110.60093 * 68.52975 * 17 16 15 20 20 C 1.34864 * 106.44084 * 118.47985 * 19 17 16 21 21 O 1.21540 * 123.73407 * 180.02562 * 20 19 17 22 22 N 1.33794 * 112.49838 * 0.13295 * 20 19 17 23 23 C 1.34761 * 111.64613 * 359.91731 * 22 20 19 24 24 O 1.21233 * 127.16145 * 180.02562 * 23 22 20 25 25 C 1.53118 * 109.16168 * 57.65690 * 16 15 14 26 26 C 1.46842 * 110.99861 * 72.95596 * 13 2 1 27 27 H 1.08993 * 109.47076 * 299.99974 * 1 2 3 28 28 H 1.09001 * 109.46920 * 60.00635 * 1 2 3 29 29 H 1.09006 * 109.46698 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47414 * 303.57056 * 4 2 1 31 31 H 1.09003 * 109.47292 * 63.57681 * 4 2 1 32 32 H 0.96998 * 119.99968 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.46104 * 65.82309 * 14 13 2 34 34 H 1.09004 * 109.46468 * 305.85461 * 14 13 2 35 35 H 1.08996 * 109.50368 * 60.76152 * 15 14 13 36 36 H 1.09003 * 109.50248 * 180.88015 * 15 14 13 37 37 H 1.08998 * 109.52502 * 297.74489 * 16 15 14 38 38 H 1.09005 * 109.47107 * 60.00411 * 18 17 16 39 39 H 1.09000 * 109.47800 * 180.02562 * 18 17 16 40 40 H 1.08997 * 109.47428 * 300.00174 * 18 17 16 41 41 H 0.96998 * 126.69138 * 298.47752 * 19 17 16 42 42 H 0.96999 * 124.17679 * 179.87520 * 22 20 19 43 43 H 1.09005 * 109.50490 * 62.28149 * 25 16 15 44 44 H 1.09000 * 109.50321 * 182.40271 * 25 16 15 45 45 H 1.09006 * 109.46415 * 54.14493 * 26 13 2 46 46 H 1.08995 * 109.46179 * 294.17543 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5444 -0.6450 1.2945 6 1 4.0781 -0.0644 0.5565 7 6 4.2394 -1.3164 2.2779 8 7 3.5896 -2.0230 3.1767 9 14 6.1043 -1.2224 2.3334 10 1 6.5170 -0.0707 3.1751 11 1 6.6462 -2.4779 2.9124 12 1 6.6322 -1.0439 0.9570 13 7 2.0197 -0.6925 -1.1994 14 6 1.3862 -2.0096 -1.3422 15 6 2.0235 -2.7593 -2.5142 16 6 1.8404 -1.9424 -3.7963 17 6 2.5283 -2.6575 -4.9609 18 6 3.9935 -2.9430 -4.6251 19 7 1.8202 -3.9057 -5.2937 20 6 1.3894 -3.7728 -6.5647 21 8 0.7621 -4.6284 -7.1577 22 7 1.7314 -2.5956 -7.1008 23 6 2.4225 -1.8346 -6.2295 24 8 2.8668 -0.7229 -6.4202 25 6 2.4665 -0.5583 -3.6041 26 6 1.8163 0.1275 -2.4004 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6253 -0.2457 2.1382 31 1 1.7299 -1.7658 1.2178 32 1 4.0786 -2.4957 3.8683 33 1 0.3201 -1.8814 -1.5296 34 1 1.5274 -2.5819 -0.4252 35 1 3.0870 -2.8999 -2.3212 36 1 1.5424 -3.7306 -2.6297 37 1 0.7772 -1.8347 -4.0109 38 1 4.0466 -3.5768 -3.7399 39 1 4.4665 -3.4516 -5.4653 40 1 4.5115 -2.0039 -4.4312 41 1 1.6903 -4.6711 -4.7122 42 1 1.5098 -2.3238 -8.0052 43 1 3.5370 -0.6644 -3.4282 44 1 2.3019 0.0429 -4.4983 45 1 2.2699 1.1076 -2.2522 46 1 0.7483 0.2457 -2.5829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568275387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:42 Heat of formation + Delta-G solvation = -74.572776 kcal Electronic energy + Delta-G solvation = -27253.089285 eV Core-core repulsion = 23562.998687 eV Total energy + Delta-G solvation = -3690.090598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.63108 -40.46451 -39.69572 -37.90564 -36.59175 -35.05643 -34.06949 -32.02262 -31.72560 -30.01569 -29.04494 -26.61938 -25.34079 -24.77814 -24.21884 -23.25494 -22.11849 -20.78742 -19.88476 -19.25699 -18.28365 -17.78611 -17.70085 -17.03357 -16.74002 -16.65415 -16.41339 -15.95882 -15.69650 -15.45407 -15.24111 -14.78075 -14.43361 -14.16593 -14.07096 -13.73312 -13.59827 -13.47268 -13.16271 -12.93181 -12.83934 -12.74065 -12.45519 -12.34645 -12.15476 -12.11504 -11.87713 -11.69550 -11.64475 -11.48083 -11.27600 -11.08882 -11.02218 -10.70902 -10.44319 -10.41764 -8.80608 -8.03960 -6.07809 0.50270 1.41896 1.46167 1.46952 1.58066 1.92051 2.08403 2.52395 2.88271 3.17166 3.33752 3.41650 3.61532 3.92957 4.01692 4.20973 4.27144 4.33507 4.43402 4.46765 4.49733 4.57239 4.68659 4.71056 4.75872 4.81427 4.90908 4.93667 5.03079 5.04217 5.11493 5.17969 5.24306 5.26137 5.32402 5.32608 5.55140 5.57889 5.76434 5.78679 5.85479 5.95856 6.37005 6.39631 6.56694 6.61162 7.05797 7.10438 7.57716 9.08010 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003836 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.816749 B = 7298.362268 C = 7743.160945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.094 3.906 3 H 0.061 0.939 4 C 0.038 3.962 5 C -0.492 4.492 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.941 5.941 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.059 3.941 15 C -0.103 4.103 16 C -0.069 4.069 17 C 0.133 3.867 18 C -0.151 4.151 19 N -0.701 5.701 20 C 0.708 3.292 21 O -0.582 6.582 22 N -0.671 5.671 23 C 0.537 3.463 24 O -0.477 6.477 25 C -0.109 4.109 26 C 0.057 3.943 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.052 0.948 30 H -0.015 1.015 31 H 0.001 0.999 32 H 0.257 0.743 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.449 0.551 42 H 0.440 0.560 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 -1.498 -19.129 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 H 0.080 0.920 4 C 0.000 4.000 5 C -0.530 4.530 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.584 5.584 9 Si 0.778 3.222 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.249 5.249 14 C -0.069 4.069 15 C -0.140 4.140 16 C -0.089 4.089 17 C 0.042 3.958 18 C -0.209 4.209 19 N -0.366 5.366 20 C 0.407 3.593 21 O -0.459 6.459 22 N -0.342 5.342 23 C 0.323 3.677 24 O -0.346 6.346 25 C -0.147 4.147 26 C -0.071 4.071 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.003 0.997 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.296 0.704 42 H 0.284 0.716 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.179 -1.525 -19.280 19.599 hybrid contribution -0.228 -0.081 0.414 0.480 sum -3.407 -1.606 -18.865 19.238 Atomic orbital electron populations 1.22381 0.97516 1.01608 1.01667 1.21602 0.91799 0.97109 0.90961 0.92043 1.19033 0.95214 0.94511 0.91198 1.21447 0.92951 1.28054 1.10577 0.92426 1.25777 1.02486 0.95734 0.95793 1.70090 1.36877 1.34124 1.17271 0.85645 0.81126 0.76986 0.78431 1.20713 1.21479 1.18800 1.61936 1.58379 1.02991 1.01612 1.21991 0.95524 0.90780 0.98564 1.21653 1.02607 0.98002 0.91784 1.21292 0.99603 0.95419 0.92571 1.21449 0.96656 0.84125 0.93550 1.22126 0.90155 1.04556 1.04034 1.45722 1.58043 1.19742 1.13090 1.15966 0.78975 0.81624 0.82709 1.91040 1.45013 1.44170 1.65646 1.44234 1.53551 1.17406 1.19011 1.20826 0.75706 0.85160 0.85994 1.90823 1.46432 1.17224 1.80167 1.21721 1.01053 0.94599 0.97327 1.22071 0.98223 0.96770 0.89995 0.92770 0.91922 0.92874 0.99684 0.98087 0.93443 0.94795 0.92738 0.90503 0.89672 0.90181 0.88786 0.90683 0.89780 0.70359 0.71637 0.90758 0.90183 0.91379 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.51 8.40 71.98 0.60 -4.91 16 2 C 0.09 3.61 2.26 44.92 0.10 3.71 16 3 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 4 C 0.04 1.88 4.40 29.85 0.13 2.01 16 5 C -0.49 -26.82 8.80 25.60 0.23 -26.60 16 6 H 0.06 3.11 7.75 -2.91 -0.02 3.08 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 8 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.53 -17.75 4.26 -871.11 -3.71 -21.46 16 14 C 0.06 1.79 4.47 86.32 0.39 2.18 16 15 C -0.10 -2.26 4.86 30.65 0.15 -2.12 16 16 C -0.07 -1.32 1.86 -10.71 -0.02 -1.34 16 17 C 0.13 2.13 0.75 2.99 0.00 2.13 16 18 C -0.15 -2.27 8.22 71.98 0.59 -1.68 16 19 N -0.70 -10.20 5.71 -439.34 -2.51 -12.71 16 20 C 0.71 13.20 9.00 179.33 1.61 14.82 16 21 O -0.58 -15.03 18.04 -3.84 -0.07 -15.10 16 22 N -0.67 -10.36 5.70 -440.87 -2.51 -12.87 16 23 C 0.54 9.60 7.17 87.94 0.63 10.23 16 24 O -0.48 -10.73 15.86 -2.88 -0.05 -10.78 16 25 C -0.11 -2.47 4.71 30.65 0.14 -2.33 16 26 C 0.06 1.55 5.18 86.33 0.45 2.00 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.70 6.93 -2.39 -0.02 1.68 16 29 H 0.05 1.69 6.44 -2.38 -0.02 1.67 16 30 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 31 H 0.00 0.05 6.39 -2.39 -0.02 0.03 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.03 0.95 6.57 -2.38 -0.02 0.93 16 34 H 0.05 2.04 6.28 -2.38 -0.01 2.02 16 35 H 0.08 1.85 6.30 -2.39 -0.02 1.84 16 36 H 0.08 1.46 7.66 -2.39 -0.02 1.44 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.35 6.40 -2.38 -0.02 1.34 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.43 6.64 -2.39 -0.02 1.41 16 41 H 0.45 5.10 8.58 -92.71 -0.80 4.30 16 42 H 0.44 5.06 8.96 -92.71 -0.83 4.23 16 43 H 0.07 1.82 6.57 -2.38 -0.02 1.80 16 44 H 0.08 1.78 6.03 -2.39 -0.01 1.76 16 45 H 0.07 1.90 7.98 -2.38 -0.02 1.88 16 46 H 0.03 0.82 6.98 -2.39 -0.02 0.80 16 Total: -1.00 -68.52 350.53 -1.67 -70.19 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.60 Total: 14.24 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 5.47 Total: -1.55 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -8.45 Total: -103.07 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.12 Total: -25.88 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -68.52 -1.67 -70.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568275387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.382 kcal (2) G-P(sol) polarization free energy of solvation -68.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds