Wall clock time and date at job start Fri Apr 10 2020 18:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47297 * 240.00038 * 2 1 3 5 5 C 1.50701 * 109.47082 * 175.00316 * 4 2 1 6 6 H 1.07998 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99731 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99549 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00185 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47145 * 90.00169 * 9 7 5 11 11 H 1.48502 * 109.47148 * 209.99959 * 9 7 5 12 12 H 1.48498 * 109.47570 * 330.00380 * 9 7 5 13 13 N 1.46902 * 109.46911 * 120.00205 * 2 1 3 14 14 C 1.46856 * 110.99619 * 295.00135 * 13 2 1 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 2 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 C 1.52996 * 109.52445 * 177.58234 * 16 15 14 18 18 C 1.53006 * 110.53440 * 295.70093 * 17 16 15 19 19 N 1.47311 * 110.60190 * 172.87049 * 17 16 15 20 20 C 1.34527 * 106.61966 * 241.47563 * 19 17 16 21 21 O 1.21533 * 123.76921 * 180.02562 * 20 19 17 22 22 N 1.33789 * 112.45874 * 359.97438 * 20 19 17 23 23 C 1.35119 * 111.68576 * 359.91352 * 22 20 19 24 24 O 1.21234 * 127.33647 * 180.09812 * 23 22 20 25 25 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 26 26 C 1.46846 * 111.00121 * 59.21018 * 13 2 1 27 27 H 1.09001 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47262 * 300.00331 * 1 2 3 29 29 H 1.09001 * 109.46630 * 60.00385 * 1 2 3 30 30 H 1.09003 * 109.47020 * 295.00489 * 4 2 1 31 31 H 1.08996 * 109.47133 * 54.99835 * 4 2 1 32 32 H 0.97001 * 119.99576 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46462 * 65.82793 * 14 13 2 34 34 H 1.09001 * 109.45242 * 305.84772 * 14 13 2 35 35 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 36 36 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 37 37 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 38 38 H 1.09002 * 109.46929 * 60.00170 * 18 17 16 39 39 H 1.08995 * 109.46845 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.46824 * 299.99764 * 18 17 16 41 41 H 0.97000 * 126.68718 * 61.43771 * 19 17 16 42 42 H 0.96997 * 124.17694 * 179.97438 * 22 20 19 43 43 H 1.08997 * 109.49417 * 182.41991 * 25 16 15 44 44 H 1.09007 * 109.52297 * 62.34418 * 25 16 15 45 45 H 1.09004 * 109.46012 * 294.17710 * 26 13 2 46 46 H 1.08997 * 109.46257 * 54.15030 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2304 -1.1927 -2.3582 8 7 5.5411 -1.0994 -2.4138 9 14 3.3016 -2.1077 -3.6958 10 1 2.9399 -1.1625 -4.7826 11 1 4.1604 -3.1878 -4.2446 12 1 2.0659 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 1.6487 0.0389 2.4177 15 6 2.2964 -0.6295 3.6325 16 6 1.8222 -2.0825 3.7239 17 6 2.5131 -2.7728 4.9015 18 6 4.0229 -2.8522 4.6664 19 7 1.9508 -4.1173 5.1168 20 6 1.4190 -4.1186 6.3525 21 8 0.8691 -5.0813 6.8503 22 7 1.5642 -2.9420 6.9726 23 6 2.2133 -2.0457 6.1973 24 8 2.4964 -0.9005 6.4768 25 6 2.1775 -2.8090 2.4226 26 6 1.5334 -2.0775 1.2428 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6055 -0.2618 -2.1369 32 1 6.0254 -1.5056 -3.1496 33 1 0.5648 0.0280 2.5320 34 1 1.9957 1.0694 2.3421 35 1 3.3809 -0.6066 3.5254 36 1 2.0088 -0.0953 4.5381 37 1 0.7423 -2.1048 3.8700 38 1 4.4274 -1.8456 4.5596 39 1 4.4972 -3.3458 5.5147 40 1 4.2197 -3.4213 3.7579 41 1 1.9613 -4.8571 4.4896 42 1 1.2437 -2.7552 7.8689 43 1 1.8046 -3.8323 2.4638 44 1 3.2602 -2.8211 2.2962 45 1 0.4500 -2.0784 1.3627 46 1 1.7965 -2.5840 0.3142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568275390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:52 Heat of formation + Delta-G solvation = -46.061072 kcal Electronic energy + Delta-G solvation = -27262.138532 eV Core-core repulsion = 23573.284294 eV Total energy + Delta-G solvation = -3688.854238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.80005 -39.39886 -38.74973 -36.92972 -35.55322 -33.73564 -32.41207 -30.98506 -30.68526 -29.01813 -27.78781 -25.75954 -24.05872 -23.46505 -22.80133 -22.17527 -21.05482 -19.60976 -18.66819 -18.41814 -16.92041 -16.90987 -16.59842 -16.11880 -15.80147 -15.59070 -15.07416 -14.68216 -14.51646 -14.24039 -14.11510 -13.44210 -13.36289 -13.14890 -12.81922 -12.61830 -12.48285 -12.20872 -12.07321 -11.87741 -11.68670 -11.34638 -11.20800 -11.02468 -10.87821 -10.73971 -10.63080 -10.55259 -10.43385 -10.16081 -9.94955 -9.65174 -9.62249 -9.49935 -9.03858 -8.46052 -7.55316 -5.94564 -3.88800 1.33662 2.17553 2.74418 2.86133 3.31799 3.40342 3.41440 3.69887 4.25348 4.37408 4.47762 4.50449 4.88015 4.97201 5.06645 5.23983 5.38815 5.40945 5.44304 5.47427 5.60141 5.61820 5.68444 5.72500 5.74838 5.84342 5.85814 5.92202 5.95496 6.00262 6.21472 6.27859 6.33288 6.42084 6.48497 6.53975 6.57990 6.66444 6.75169 7.08548 7.13693 7.31262 7.76818 7.79864 7.88368 7.92642 8.68563 9.18775 9.68548 11.19308 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.003719 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.912332 B = 7527.909379 C = 7815.348441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.076 0.924 4 C -0.009 4.009 5 C -0.491 4.491 6 H 0.080 0.920 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.507 5.507 14 C 0.056 3.944 15 C -0.116 4.116 16 C -0.078 4.078 17 C 0.125 3.875 18 C -0.151 4.151 19 N -0.715 5.715 20 C 0.705 3.295 21 O -0.551 6.551 22 N -0.684 5.684 23 C 0.533 3.467 24 O -0.455 6.455 25 C -0.110 4.110 26 C 0.056 3.944 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.024 0.976 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.441 0.559 42 H 0.430 0.570 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.023 0.977 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -3.429 15.682 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.012 4.012 3 H 0.095 0.905 4 C -0.046 4.046 5 C -0.529 4.529 6 H 0.098 0.902 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.230 5.230 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.098 4.098 17 C 0.035 3.965 18 C -0.209 4.209 19 N -0.379 5.379 20 C 0.404 3.596 21 O -0.426 6.426 22 N -0.355 5.355 23 C 0.319 3.681 24 O -0.323 6.323 25 C -0.148 4.148 26 C -0.072 4.072 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.286 0.714 42 H 0.272 0.728 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.041 0.959 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.646 -3.374 15.889 17.953 hybrid contribution -1.533 -0.779 -0.614 1.826 sum -9.180 -4.154 15.276 18.299 Atomic orbital electron populations 1.22565 0.99831 1.01247 1.01023 1.21677 0.89769 0.98652 0.91090 0.90546 1.19730 0.98042 0.95266 0.91571 1.21051 0.89321 1.33871 1.08658 0.90192 1.25000 0.94635 0.96300 0.97734 1.69910 1.06407 1.46144 1.32235 0.86939 0.80160 0.80096 0.82922 1.20611 1.21637 1.19393 1.62005 1.59115 1.01008 1.00889 1.22044 0.96730 0.98168 0.90302 1.21808 1.02512 0.92941 0.98196 1.21436 0.99294 0.96484 0.92570 1.21592 0.97816 0.82528 0.94596 1.22119 0.89842 1.05220 1.03717 1.45720 1.60914 1.15036 1.16219 1.15849 0.79159 0.82555 0.82008 1.91049 1.47305 1.35043 1.69169 1.44452 1.56609 1.13938 1.20516 1.20908 0.75807 0.85426 0.85992 1.90823 1.50207 1.14776 1.76534 1.21722 1.03124 0.97499 0.92442 1.22058 0.95544 0.90587 0.98998 0.93047 0.93683 0.92561 0.96443 0.96914 0.93067 0.95800 0.90784 0.89921 0.90699 0.90830 0.89047 0.91811 0.89221 0.71440 0.72841 0.92163 0.89517 0.95942 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 8.50 37.16 0.32 -2.55 16 2 C 0.10 1.77 2.30 -67.71 -0.16 1.61 16 3 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 4 C -0.01 -0.20 3.33 -27.88 -0.09 -0.29 16 5 C -0.49 -13.22 9.39 -34.44 -0.32 -13.55 16 6 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 8 N -0.91 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 N -0.51 -8.53 4.36 -226.68 -0.99 -9.51 16 14 C 0.06 0.78 5.03 -3.83 -0.02 0.76 16 15 C -0.12 -1.42 4.72 -26.65 -0.13 -1.54 16 16 C -0.08 -0.83 1.86 -90.45 -0.17 -1.00 16 17 C 0.13 1.16 0.74 -132.09 -0.10 1.06 16 18 C -0.15 -1.33 8.24 37.16 0.31 -1.02 16 19 N -0.71 -6.15 5.67 -52.94 -0.30 -6.45 16 20 C 0.71 7.38 8.99 -88.02 -0.79 6.58 16 21 O -0.55 -7.60 18.04 5.34 0.10 -7.51 16 22 N -0.68 -6.06 5.72 -15.71 -0.09 -6.14 16 23 C 0.53 5.38 7.20 -10.40 -0.07 5.31 16 24 O -0.46 -5.58 15.91 5.60 0.09 -5.49 16 25 C -0.11 -1.30 4.89 -26.61 -0.13 -1.43 16 26 C 0.06 0.85 4.64 -3.84 -0.02 0.83 16 27 H 0.05 0.77 6.52 -51.93 -0.34 0.43 16 28 H 0.04 0.62 6.65 -51.93 -0.35 0.27 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.39 5.11 -51.93 -0.27 0.13 16 31 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.02 0.32 6.73 -51.93 -0.35 -0.03 16 34 H 0.07 1.05 8.08 -51.93 -0.42 0.64 16 35 H 0.08 1.07 6.53 -51.93 -0.34 0.74 16 36 H 0.07 0.90 6.06 -51.93 -0.31 0.59 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.87 6.60 -51.93 -0.34 0.53 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.77 6.41 -51.93 -0.33 0.43 16 41 H 0.44 3.13 8.54 -40.82 -0.35 2.78 16 42 H 0.43 2.92 8.96 -40.82 -0.37 2.55 16 43 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 44 H 0.09 1.12 6.32 -51.92 -0.33 0.79 16 45 H 0.02 0.32 6.62 -51.93 -0.34 -0.02 16 46 H 0.09 1.60 5.93 -51.93 -0.31 1.29 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -32.16 346.22 -8.15 -40.30 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.80 Total: 3.26 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.47 Total: -3.55 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.60 Total: -48.67 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.19 Total: -13.00 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.16 -8.15 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568275390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds