Wall clock time and date at job start Fri Apr 10 2020 18:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47297 * 240.00038 * 2 1 3 5 5 C 1.50701 * 109.47082 * 175.00316 * 4 2 1 6 6 H 1.07998 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99731 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99549 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00185 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47145 * 90.00169 * 9 7 5 11 11 H 1.48502 * 109.47148 * 209.99959 * 9 7 5 12 12 H 1.48498 * 109.47570 * 330.00380 * 9 7 5 13 13 N 1.46902 * 109.46911 * 120.00205 * 2 1 3 14 14 C 1.46856 * 110.99619 * 295.00135 * 13 2 1 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 2 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 C 1.52996 * 109.52445 * 177.58234 * 16 15 14 18 18 C 1.53006 * 110.53440 * 295.70093 * 17 16 15 19 19 N 1.47311 * 110.60190 * 172.87049 * 17 16 15 20 20 C 1.34527 * 106.61966 * 241.47563 * 19 17 16 21 21 O 1.21533 * 123.76921 * 180.02562 * 20 19 17 22 22 N 1.33789 * 112.45874 * 359.97438 * 20 19 17 23 23 C 1.35119 * 111.68576 * 359.91352 * 22 20 19 24 24 O 1.21234 * 127.33647 * 180.09812 * 23 22 20 25 25 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 26 26 C 1.46846 * 111.00121 * 59.21018 * 13 2 1 27 27 H 1.09001 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47262 * 300.00331 * 1 2 3 29 29 H 1.09001 * 109.46630 * 60.00385 * 1 2 3 30 30 H 1.09003 * 109.47020 * 295.00489 * 4 2 1 31 31 H 1.08996 * 109.47133 * 54.99835 * 4 2 1 32 32 H 0.97001 * 119.99576 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46462 * 65.82793 * 14 13 2 34 34 H 1.09001 * 109.45242 * 305.84772 * 14 13 2 35 35 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 36 36 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 37 37 H 1.08997 * 109.52263 * 297.77214 * 16 15 14 38 38 H 1.09002 * 109.46929 * 60.00170 * 18 17 16 39 39 H 1.08995 * 109.46845 * 179.97438 * 18 17 16 40 40 H 1.08996 * 109.46824 * 299.99764 * 18 17 16 41 41 H 0.97000 * 126.68718 * 61.43771 * 19 17 16 42 42 H 0.96997 * 124.17694 * 179.97438 * 22 20 19 43 43 H 1.08997 * 109.49417 * 182.41991 * 25 16 15 44 44 H 1.09007 * 109.52297 * 62.34418 * 25 16 15 45 45 H 1.09004 * 109.46012 * 294.17710 * 26 13 2 46 46 H 1.08997 * 109.46257 * 54.15030 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2304 -1.1927 -2.3582 8 7 5.5411 -1.0994 -2.4138 9 14 3.3016 -2.1077 -3.6958 10 1 2.9399 -1.1625 -4.7826 11 1 4.1604 -3.1878 -4.2446 12 1 2.0659 -2.7003 -3.1238 13 7 2.0197 -0.6926 1.1994 14 6 1.6487 0.0389 2.4177 15 6 2.2964 -0.6295 3.6325 16 6 1.8222 -2.0825 3.7239 17 6 2.5131 -2.7728 4.9015 18 6 4.0229 -2.8522 4.6664 19 7 1.9508 -4.1173 5.1168 20 6 1.4190 -4.1186 6.3525 21 8 0.8691 -5.0813 6.8503 22 7 1.5642 -2.9420 6.9726 23 6 2.2133 -2.0457 6.1973 24 8 2.4964 -0.9005 6.4768 25 6 2.1775 -2.8090 2.4226 26 6 1.5334 -2.0775 1.2428 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6055 -0.2618 -2.1369 32 1 6.0254 -1.5056 -3.1496 33 1 0.5648 0.0280 2.5320 34 1 1.9957 1.0694 2.3421 35 1 3.3809 -0.6066 3.5254 36 1 2.0088 -0.0953 4.5381 37 1 0.7423 -2.1048 3.8700 38 1 4.4274 -1.8456 4.5596 39 1 4.4972 -3.3458 5.5147 40 1 4.2197 -3.4213 3.7579 41 1 1.9613 -4.8571 4.4896 42 1 1.2437 -2.7552 7.8689 43 1 1.8046 -3.8323 2.4638 44 1 3.2602 -2.8211 2.2962 45 1 0.4500 -2.0784 1.3627 46 1 1.7965 -2.5840 0.3142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568275390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:50 Heat of formation + Delta-G solvation = -71.228594 kcal Electronic energy + Delta-G solvation = -27263.229877 eV Core-core repulsion = 23573.284294 eV Total energy + Delta-G solvation = -3689.945584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.62776 -40.49626 -39.71385 -37.93202 -36.59961 -35.01655 -34.10747 -32.16111 -31.76475 -30.24165 -29.30172 -26.65165 -25.22603 -24.67828 -24.10066 -23.21430 -22.12850 -20.78629 -19.86181 -19.26326 -18.71492 -17.79518 -17.69527 -17.06071 -16.76396 -16.66954 -16.30854 -15.97101 -15.64680 -15.46827 -15.31971 -14.82660 -14.44836 -14.32615 -14.17118 -13.88991 -13.71307 -13.50890 -13.30788 -12.90873 -12.86155 -12.78479 -12.47346 -12.23670 -12.14498 -11.90654 -11.80820 -11.70222 -11.55490 -11.48238 -11.30966 -11.23273 -11.10320 -10.73071 -10.61702 -10.45908 -8.80717 -8.12445 -6.10720 0.49553 1.40184 1.41608 1.41930 1.51692 1.92164 2.07060 2.45500 2.87549 3.13376 3.28600 3.40854 3.60425 3.91823 4.00994 4.17476 4.25222 4.31690 4.41862 4.46439 4.47069 4.55408 4.67649 4.69846 4.74514 4.79568 4.89210 4.93504 4.98510 5.02884 5.10287 5.16167 5.18441 5.20236 5.24356 5.32134 5.38026 5.54544 5.63160 5.77941 5.80590 5.85489 6.36083 6.43567 6.54369 6.61029 6.98090 7.10751 7.49937 9.04776 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019826 B = 0.003719 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.912332 B = 7527.909379 C = 7815.348441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 H 0.058 0.942 4 C -0.006 4.006 5 C -0.485 4.485 6 H 0.037 0.963 7 C 0.001 3.999 8 N -0.957 5.957 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.247 1.247 13 N -0.531 5.531 14 C 0.058 3.942 15 C -0.110 4.110 16 C -0.068 4.068 17 C 0.133 3.867 18 C -0.151 4.151 19 N -0.700 5.700 20 C 0.709 3.291 21 O -0.583 6.583 22 N -0.673 5.673 23 C 0.538 3.462 24 O -0.476 6.476 25 C -0.105 4.105 26 C 0.055 3.945 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.014 0.986 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.449 0.551 42 H 0.440 0.560 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 -4.552 16.211 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 H 0.076 0.924 4 C -0.043 4.043 5 C -0.523 4.523 6 H 0.056 0.944 7 C -0.194 4.194 8 N -0.600 5.600 9 Si 0.763 3.237 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.171 1.171 13 N -0.256 5.256 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.088 4.088 17 C 0.042 3.958 18 C -0.209 4.209 19 N -0.364 5.364 20 C 0.408 3.592 21 O -0.460 6.460 22 N -0.344 5.344 23 C 0.324 3.676 24 O -0.346 6.346 25 C -0.142 4.142 26 C -0.072 4.072 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.296 0.704 42 H 0.283 0.717 43 H 0.105 0.895 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.884 -4.495 16.429 19.693 hybrid contribution -0.775 -0.351 -0.721 1.116 sum -10.659 -4.847 15.708 19.592 Atomic orbital electron populations 1.22413 0.96838 1.02015 1.02219 1.21465 0.92077 0.97194 0.90339 0.92365 1.19669 0.94703 0.96155 0.93770 1.21268 0.91828 1.32226 1.07021 0.94418 1.25862 0.95366 0.97625 1.00519 1.70079 1.08404 1.48063 1.33441 0.85847 0.79409 0.78703 0.79709 1.20044 1.21750 1.17079 1.61920 1.60256 1.02100 1.01286 1.22050 0.97626 0.97603 0.89676 1.21721 1.01623 0.94054 0.97433 1.21299 0.99796 0.95292 0.92414 1.21440 0.97964 0.82562 0.93792 1.22117 0.89453 1.04895 1.04402 1.45640 1.60055 1.14918 1.15813 1.15863 0.78776 0.82319 0.82243 1.91040 1.48815 1.36176 1.69921 1.44319 1.55953 1.13202 1.20899 1.20901 0.75425 0.85098 0.86200 1.90825 1.51053 1.15701 1.76989 1.21672 1.02142 0.98687 0.91734 1.22053 0.96649 0.89517 0.99023 0.92382 0.91860 0.92057 0.95822 0.96767 0.93176 0.94392 0.91704 0.91175 0.90203 0.89933 0.89980 0.90689 0.88896 0.70375 0.71672 0.89462 0.90879 0.94409 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.93 8.50 71.98 0.61 -4.32 16 2 C 0.10 3.53 2.30 44.92 0.10 3.64 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 C -0.01 -0.24 3.33 29.85 0.10 -0.15 16 5 C -0.48 -26.77 9.39 25.60 0.24 -26.53 16 6 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 7 C 0.00 0.07 5.47 84.65 0.46 0.53 16 8 N -0.96 -59.47 13.96 21.45 0.30 -59.18 16 9 Si 0.94 43.47 27.47 68.60 1.88 45.36 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 13 N -0.53 -17.61 4.36 -871.09 -3.80 -21.41 16 14 C 0.06 1.57 5.03 86.32 0.43 2.00 16 15 C -0.11 -2.55 4.72 30.65 0.14 -2.41 16 16 C -0.07 -1.30 1.86 -10.69 -0.02 -1.32 16 17 C 0.13 2.19 0.74 2.98 0.00 2.19 16 18 C -0.15 -2.44 8.24 71.98 0.59 -1.85 16 19 N -0.70 -10.24 5.67 -439.82 -2.49 -12.73 16 20 C 0.71 13.25 8.99 179.44 1.61 14.86 16 21 O -0.58 -15.03 18.04 -3.82 -0.07 -15.10 16 22 N -0.67 -10.49 5.72 -440.68 -2.52 -13.01 16 23 C 0.54 9.80 7.20 87.88 0.63 10.43 16 24 O -0.48 -10.96 15.91 -2.89 -0.05 -11.00 16 25 C -0.10 -2.28 4.89 30.67 0.15 -2.13 16 26 C 0.06 1.58 4.64 86.32 0.40 1.98 16 27 H 0.06 1.55 6.52 -2.39 -0.02 1.54 16 28 H 0.06 1.55 6.65 -2.39 -0.02 1.53 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.02 1.03 5.11 -2.39 -0.01 1.01 16 31 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.04 0.92 6.73 -2.39 -0.02 0.90 16 34 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.07 1.81 6.53 -2.39 -0.02 1.80 16 36 H 0.08 1.81 6.06 -2.39 -0.01 1.79 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.52 6.60 -2.39 -0.02 1.51 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.46 6.41 -2.39 -0.02 1.45 16 41 H 0.45 5.08 8.54 -92.71 -0.79 4.29 16 42 H 0.44 5.12 8.96 -92.71 -0.83 4.29 16 43 H 0.09 1.43 7.60 -2.39 -0.02 1.41 16 44 H 0.07 1.82 6.32 -2.38 -0.02 1.80 16 45 H 0.04 0.96 6.62 -2.38 -0.02 0.95 16 46 H 0.06 2.15 5.93 -2.39 -0.01 2.14 16 Total: -1.00 -70.54 346.22 -1.92 -72.46 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.65 Total: 17.67 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.47 Total: -3.07 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -8.51 Total: -106.32 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.11 Total: -26.10 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -70.54 -1.92 -72.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568275390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.235 kcal (2) G-P(sol) polarization free energy of solvation -70.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds