Wall clock time and date at job start Fri Apr 10 2020 18:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46568 * 2 1 4 4 N 1.46898 * 109.47466 * 240.00151 * 2 1 3 5 5 C 1.46900 * 110.99985 * 84.99627 * 4 2 1 6 6 C 1.53005 * 109.46945 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.47076 * 60.00021 * 6 5 4 8 8 O 1.42901 * 109.46988 * 300.00078 * 6 5 4 9 9 C 1.53001 * 109.47020 * 180.02562 * 6 5 4 10 10 N 1.46897 * 109.47094 * 180.46532 * 9 6 5 11 11 C 1.46897 * 111.00257 * 199.84917 * 10 9 6 12 12 C 1.46903 * 111.00263 * 75.89387 * 10 9 6 13 13 C 1.50698 * 109.47127 * 190.00388 * 12 10 9 14 14 H 1.08006 * 119.99988 * 359.97438 * 13 12 10 15 15 C 1.37879 * 120.00036 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99783 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00038 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47085 * 90.00257 * 17 15 13 19 19 H 1.48503 * 109.47165 * 210.00334 * 17 15 13 20 20 H 1.48503 * 109.47302 * 330.00281 * 17 15 13 21 21 C 1.50696 * 109.47104 * 119.99719 * 2 1 3 22 22 C 1.38828 * 120.75934 * 80.00311 * 21 2 1 23 23 C 1.38047 * 119.29228 * 179.97438 * 22 21 2 24 24 N 1.31962 * 120.83256 * 0.02562 * 23 22 21 25 25 C 1.32247 * 121.64913 * 359.97438 * 24 23 22 26 26 O 1.35684 * 119.68314 * 180.02562 * 25 24 23 27 27 C 1.38388 * 120.75933 * 259.72386 * 21 2 1 28 28 H 1.08997 * 109.47502 * 299.99677 * 1 2 3 29 29 H 1.09005 * 109.47185 * 60.00257 * 1 2 3 30 30 H 1.09006 * 109.46568 * 179.97438 * 1 2 3 31 31 H 1.00903 * 110.99864 * 321.04070 * 4 2 1 32 32 H 1.08998 * 109.47445 * 299.99997 * 5 4 2 33 33 H 1.09001 * 109.47216 * 60.00183 * 5 4 2 34 34 H 0.96701 * 114.00160 * 299.99950 * 8 6 5 35 35 H 1.09001 * 109.47110 * 300.46064 * 9 6 5 36 36 H 1.08994 * 109.47309 * 60.45921 * 9 6 5 37 37 H 1.08998 * 109.47057 * 64.81426 * 11 10 9 38 38 H 1.08998 * 109.47318 * 184.81746 * 11 10 9 39 39 H 1.09005 * 109.46716 * 304.82181 * 11 10 9 40 40 H 1.09007 * 109.46775 * 310.00046 * 12 10 9 41 41 H 1.08996 * 109.47473 * 69.99941 * 12 10 9 42 42 H 0.96999 * 119.99906 * 179.97438 * 16 15 13 43 43 H 1.08004 * 120.35160 * 359.97438 * 22 21 2 44 44 H 1.08002 * 119.57906 * 179.97438 * 23 22 21 45 45 H 0.96702 * 113.99953 * 90.00359 * 26 25 24 46 46 H 1.08005 * 120.43956 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3469 6 6 2.5951 -0.5331 -3.5745 7 1 1.9185 -1.3565 -3.8030 8 8 3.9000 -1.0496 -3.3052 9 6 2.6611 0.4201 -4.7694 10 7 3.1427 -0.3082 -5.9507 11 6 3.6635 0.6187 -6.9645 12 6 2.0857 -1.1610 -6.5106 13 6 2.6757 -2.0698 -7.5580 14 1 3.7303 -2.0187 -7.7853 15 6 1.8691 -2.9666 -8.2261 16 7 0.5850 -3.0292 -7.9488 17 14 2.6002 -4.0926 -9.5248 18 1 3.0528 -5.3552 -8.8874 19 1 1.5715 -4.3975 -10.5515 20 1 3.7576 -3.4204 -10.1682 21 6 2.0323 -0.7103 1.2305 22 6 2.0737 -2.0970 1.2826 23 6 2.5400 -2.7163 2.4248 24 7 2.9439 -2.0072 3.4618 25 6 2.9197 -0.6850 3.4502 26 8 3.3450 0.0045 4.5386 27 6 2.4682 0.0048 2.3321 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.4497 -1.4979 -1.4100 32 1 1.0871 0.6163 -2.5526 33 1 2.7588 1.0463 -2.1182 34 1 4.5557 -0.3711 -3.0935 35 1 1.6674 0.8208 -4.9698 36 1 3.3442 1.2389 -4.5438 37 1 4.5445 1.1275 -6.5732 38 1 3.9340 0.0615 -7.8614 39 1 2.8983 1.3548 -7.2109 40 1 1.6442 -1.7617 -5.7153 41 1 1.3163 -0.5359 -6.9636 42 1 0.0175 -3.6598 -8.4191 43 1 1.7446 -2.6850 0.4385 44 1 2.5738 -3.7948 2.4706 45 1 4.2884 0.2165 4.5259 46 1 2.4544 1.0847 2.3240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591768660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:55 Heat of formation + Delta-G solvation = -47.862808 kcal Electronic energy + Delta-G solvation = -25228.512526 eV Core-core repulsion = 21539.580159 eV Total energy + Delta-G solvation = -3688.932367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.74450 -38.49913 -37.54819 -36.54492 -35.30363 -32.85147 -32.48442 -30.53928 -30.30234 -28.74834 -27.28700 -25.67438 -24.37862 -23.74859 -23.22969 -21.60104 -21.26168 -20.04815 -18.58420 -17.05096 -16.87390 -16.48671 -16.08150 -15.81313 -15.44393 -15.20339 -14.92765 -14.71366 -14.41797 -14.16749 -13.82792 -13.57850 -13.46127 -13.27587 -12.89002 -12.56946 -12.42661 -12.21021 -11.99329 -11.97057 -11.75443 -11.49190 -11.43209 -11.15634 -10.91531 -10.72559 -10.62878 -10.37076 -9.87278 -9.78573 -9.70030 -9.50557 -9.14330 -9.12799 -8.55580 -8.42951 -7.21920 -6.03219 -4.03438 0.81449 0.98155 3.21016 3.32943 3.38628 3.42241 3.60932 3.83247 4.31868 4.43311 4.49300 4.69077 4.79468 4.80761 4.87579 4.89828 4.97859 5.20290 5.24666 5.30816 5.33711 5.34928 5.42831 5.50051 5.58485 5.65290 5.68790 5.72131 5.83405 5.99985 6.06229 6.11707 6.29929 6.30351 6.44589 6.71101 6.80347 7.17062 7.21127 7.25477 7.29556 7.70858 7.79756 8.07161 8.15942 8.24351 8.54848 9.03898 9.60522 11.07933 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.002463 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.107428 B =11366.214745 C =11811.556530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.090 0.910 4 N -0.670 5.670 5 C 0.028 3.972 6 C 0.119 3.881 7 H 0.099 0.901 8 O -0.530 6.530 9 C 0.026 3.974 10 N -0.530 5.530 11 C 0.038 3.962 12 C 0.193 3.807 13 C -0.503 4.503 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.005 4.005 22 C -0.157 4.157 23 C 0.122 3.878 24 N -0.509 5.509 25 C 0.305 3.695 26 O -0.486 6.486 27 C -0.184 4.184 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.347 0.653 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.361 0.639 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.007 0.993 40 H 0.030 0.970 41 H -0.012 1.012 42 H 0.261 0.739 43 H 0.140 0.860 44 H 0.161 0.839 45 H 0.399 0.601 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 8.883 19.426 21.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.108 0.892 4 N -0.301 5.301 5 C -0.102 4.102 6 C 0.059 3.941 7 H 0.117 0.883 8 O -0.332 6.332 9 C -0.104 4.104 10 N -0.254 5.254 11 C -0.111 4.111 12 C 0.068 3.932 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.013 4.013 22 C -0.178 4.178 23 C -0.035 4.035 24 N -0.228 5.228 25 C 0.126 3.874 26 O -0.293 6.293 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.206 0.794 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.025 0.975 40 H 0.048 0.952 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.158 0.842 44 H 0.178 0.822 45 H 0.256 0.744 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.298 7.584 20.485 21.964 hybrid contribution -1.015 1.075 -1.890 2.399 sum 1.284 8.659 18.595 20.552 Atomic orbital electron populations 1.22502 0.95592 1.03023 1.02806 1.20482 0.93059 0.97393 0.88174 0.89203 1.60440 1.57261 1.09458 1.02902 1.22768 1.00156 0.95769 0.91496 1.21845 0.86012 0.96475 0.89802 0.88275 1.86684 1.18521 1.36191 1.91805 1.22667 0.98372 0.95688 0.93655 1.62012 1.37727 1.20116 1.05591 1.22227 0.97328 0.94739 0.96802 1.19762 0.87781 0.91121 0.94559 1.21157 0.95255 1.18605 1.19190 0.91846 1.24986 0.94816 0.97405 0.97482 1.69953 1.04345 1.37184 1.42601 0.86494 0.78676 0.81090 0.81129 1.20566 1.21390 1.19880 1.20117 0.93432 0.93759 0.94020 1.21988 1.01247 0.94792 0.99725 1.22523 0.93400 0.99993 0.87544 1.67140 1.17744 1.07906 1.30050 1.19093 0.95741 0.86964 0.85567 1.84772 1.30597 1.72969 1.40918 1.21915 1.04186 1.01527 0.92886 0.91772 0.91635 0.91773 0.83365 0.94329 0.90894 0.79428 0.95172 0.92190 0.93734 0.90436 0.97456 0.95213 0.99464 0.92987 0.84202 0.82229 0.74369 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 9.14 37.16 0.34 -1.09 16 2 C 0.12 1.04 2.82 -68.87 -0.19 0.84 16 3 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 4 N -0.67 -7.02 5.60 -107.95 -0.60 -7.62 16 5 C 0.03 0.31 5.15 -3.82 -0.02 0.29 16 6 C 0.12 1.81 3.24 -26.73 -0.09 1.72 16 7 H 0.10 1.79 6.78 -51.93 -0.35 1.44 16 8 O -0.53 -8.70 13.08 -35.23 -0.46 -9.16 16 9 C 0.03 0.43 4.66 -3.82 -0.02 0.41 16 10 N -0.53 -11.22 4.56 -244.37 -1.11 -12.33 16 11 C 0.04 0.72 9.37 60.06 0.56 1.28 16 12 C 0.19 4.96 4.55 -4.98 -0.02 4.94 16 13 C -0.50 -14.17 8.39 -34.44 -0.29 -14.46 16 14 H 0.06 1.78 7.17 -52.48 -0.38 1.41 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.00 -0.05 4.98 -104.35 -0.52 -0.56 16 22 C -0.16 -1.52 9.42 -39.43 -0.37 -1.89 16 23 C 0.12 1.22 11.18 -17.57 -0.20 1.02 16 24 N -0.51 -6.04 10.39 -13.33 -0.14 -6.18 16 25 C 0.31 3.28 7.74 -17.12 -0.13 3.15 16 26 O -0.49 -4.48 13.56 -18.75 -0.25 -4.74 16 27 C -0.18 -1.72 9.71 -39.28 -0.38 -2.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.35 3.72 7.91 -39.29 -0.31 3.41 16 32 H 0.04 0.41 7.44 -51.93 -0.39 0.02 16 33 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 34 H 0.36 4.65 9.04 45.56 0.41 5.06 16 35 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 36 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.62 6.66 -51.93 -0.35 1.27 16 39 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 40 H 0.03 0.81 6.63 -51.92 -0.34 0.47 16 41 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.14 1.22 7.37 -52.48 -0.39 0.83 16 44 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.40 1.71 9.06 45.56 0.41 2.12 16 46 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -33.98 379.42 -8.37 -42.35 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.80 Total: 6.14 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.43 Total: -5.01 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -1.12 Total: -52.01 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.71 Total: -13.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.98 -8.37 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591768660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.513 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds