Wall clock time and date at job start Fri Apr 10 2020 18:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47213 * 2 1 4 4 C 1.46758 * 124.35217 * 90.00078 * 3 2 1 5 5 C 1.54483 * 105.47590 * 197.01803 * 4 3 2 6 6 H 1.08999 * 110.96717 * 92.73988 * 5 4 3 7 7 C 1.52997 * 110.96943 * 216.46181 * 5 4 3 8 8 N 1.46498 * 109.47186 * 184.99824 * 7 5 4 9 9 C 1.34778 * 120.00066 * 180.02562 * 8 7 5 10 10 O 1.21581 * 120.00092 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99787 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99991 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47046 * 181.14775 * 12 11 9 14 14 C 1.50700 * 115.55347 * 39.67765 * 13 12 11 15 15 H 1.08000 * 120.00107 * 264.53059 * 14 13 12 16 16 C 1.37883 * 119.99669 * 84.53467 * 14 13 12 17 17 N 1.31511 * 120.00023 * 352.92526 * 16 14 13 18 18 Si 1.86805 * 119.99584 * 172.92523 * 16 14 13 19 19 H 1.48507 * 109.46961 * 89.99794 * 18 16 14 20 20 H 1.48493 * 109.46800 * 209.99419 * 18 16 14 21 21 H 1.48493 * 109.47209 * 330.00030 * 18 16 14 22 22 C 1.53001 * 117.49728 * 253.96612 * 13 12 11 23 23 C 1.52993 * 60.00330 * 252.51275 * 22 13 12 24 24 C 1.54622 * 101.76220 * 334.58381 * 5 4 3 25 25 C 1.34417 * 124.34818 * 269.70340 * 3 2 1 26 26 O 1.21284 * 124.94206 * 359.57105 * 25 3 2 27 27 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47174 * 59.99762 * 1 2 3 29 29 H 1.09000 * 109.47027 * 299.99943 * 1 2 3 30 30 H 1.08999 * 109.47359 * 119.99723 * 2 1 3 31 31 H 1.09000 * 109.47027 * 240.00057 * 2 1 3 32 32 H 1.09001 * 110.24362 * 316.01686 * 4 3 2 33 33 H 1.08997 * 110.24795 * 77.92686 * 4 3 2 34 34 H 1.09000 * 109.47243 * 305.00467 * 7 5 4 35 35 H 1.09007 * 109.47074 * 65.00075 * 7 5 4 36 36 H 0.97001 * 119.99633 * 0.02562 * 8 7 5 37 37 H 0.97001 * 120.00496 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46725 * 301.14360 * 12 11 9 39 39 H 1.08991 * 109.47211 * 61.14604 * 12 11 9 40 40 H 0.97003 * 119.99377 * 185.03675 * 17 16 14 41 41 H 1.09004 * 117.50124 * 0.02562 * 22 13 12 42 42 H 1.09005 * 117.49950 * 145.01869 * 22 13 12 43 43 H 1.08994 * 117.50157 * 252.50866 * 23 22 13 44 44 H 1.09000 * 117.49675 * 107.49171 * 23 22 13 45 45 H 1.09003 * 110.48857 * 143.47517 * 24 5 4 46 46 H 1.09000 * 110.48636 * 265.98310 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3529 3.6346 0.7486 6 1 1.3783 4.1129 0.8453 7 6 3.4197 4.4104 1.5239 8 7 3.3665 5.8247 1.1457 9 6 4.2205 6.7045 1.7052 10 8 5.0354 6.3243 2.5235 11 7 4.1719 8.0055 1.3569 12 6 5.1006 8.9618 1.9646 13 6 4.8169 10.3637 1.4216 14 6 3.3609 10.7102 1.2453 15 1 2.8884 10.5836 0.2824 16 6 2.6321 11.1890 2.3133 17 7 3.1651 11.2126 3.5153 18 14 0.8876 11.8042 2.0527 19 1 -0.0653 10.6785 2.2265 20 1 0.5843 12.8670 3.0444 21 1 0.7571 12.3558 0.6802 22 6 5.8090 10.9442 0.4117 23 6 5.7652 11.4889 1.8407 24 6 2.7504 3.4821 -0.7379 25 6 2.2766 2.0943 -1.1098 26 8 2.1462 1.6856 -2.2442 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.4933 2.0266 1.9382 33 1 3.2493 1.8628 1.6437 34 1 3.2342 4.3130 2.5936 35 1 4.4049 4.0080 1.2879 36 1 2.7166 6.1279 0.4926 37 1 3.5220 8.3088 0.7038 38 1 4.9695 8.9580 3.0468 39 1 6.1246 8.6784 1.7217 40 1 2.6291 11.4804 4.2783 41 1 6.6636 10.3271 0.1340 42 1 5.4087 11.5767 -0.3806 43 1 5.3360 12.4798 1.9887 44 1 6.5911 11.2304 2.5034 45 1 2.2490 4.2351 -1.3460 46 1 3.8316 3.5579 -0.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593398989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:44 Heat of formation + Delta-G solvation = -46.989215 kcal Electronic energy + Delta-G solvation = -25399.086120 eV Core-core repulsion = 21710.191635 eV Total energy + Delta-G solvation = -3688.894485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81103 -39.29975 -37.11081 -36.66081 -35.30639 -33.34043 -33.04274 -32.03451 -30.13365 -28.36368 -26.60040 -25.55891 -24.60250 -23.45950 -21.21579 -21.15963 -20.34172 -19.60732 -19.37053 -17.59176 -17.29534 -16.74456 -16.18152 -15.57732 -15.39195 -15.20572 -14.72649 -14.35998 -14.27303 -14.03989 -13.95854 -13.83011 -13.52256 -13.12855 -12.85263 -12.67998 -12.58831 -12.41067 -12.09057 -11.93735 -11.61604 -11.58162 -11.41173 -11.25181 -11.05391 -10.95523 -10.55846 -10.24367 -9.99402 -9.75434 -9.49681 -9.06617 -8.96185 -8.84752 -8.53540 -8.30115 -7.83658 -6.12380 -4.21653 2.34385 2.64307 3.20152 3.23560 3.29784 3.31654 3.84494 4.01043 4.13004 4.30016 4.38041 4.59267 4.70864 4.80716 4.93915 4.99804 5.06148 5.11730 5.17982 5.22569 5.32877 5.33699 5.43162 5.48721 5.54355 5.74618 5.78868 5.88044 6.05166 6.22501 6.31910 6.49296 6.57997 6.72227 6.76514 6.79973 6.90205 7.08830 7.32952 7.40571 7.43770 7.64372 7.76022 7.91276 8.31448 8.74505 8.80696 9.26972 9.45533 10.95216 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.002746 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.333573 B =10194.558256 C =10800.498770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.622 5.622 4 C 0.111 3.889 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.154 3.846 8 N -0.755 5.755 9 C 0.698 3.302 10 O -0.608 6.608 11 N -0.711 5.711 12 C 0.183 3.817 13 C 0.028 3.972 14 C -0.504 4.504 15 H 0.060 0.940 16 C 0.077 3.923 17 N -0.869 5.869 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.152 4.152 24 C -0.152 4.152 25 C 0.519 3.481 26 O -0.534 6.534 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.395 0.605 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -18.058 -4.116 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.013 4.013 5 C -0.132 4.132 6 H 0.118 0.882 7 C 0.029 3.971 8 N -0.412 5.412 9 C 0.397 3.603 10 O -0.488 6.488 11 N -0.364 5.364 12 C 0.059 3.941 13 C 0.028 3.972 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.128 4.128 17 N -0.504 5.504 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.190 4.190 24 C -0.192 4.192 25 C 0.307 3.693 26 O -0.411 6.411 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.228 0.772 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.123 0.877 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.292 -18.555 -3.750 19.215 hybrid contribution -1.660 0.701 -0.441 1.855 sum -4.952 -17.855 -4.191 18.997 Atomic orbital electron populations 1.22161 0.95713 1.02369 1.02575 1.21340 0.94413 0.81138 1.03170 1.48357 1.65955 1.13980 1.07339 1.22038 1.02303 0.89621 0.87321 1.22408 1.01091 0.95199 0.94493 0.88185 1.20981 0.97420 0.79945 0.98754 1.45001 1.40059 1.07544 1.48618 1.16013 0.81428 0.81473 0.81340 1.90858 1.41253 1.78938 1.37796 1.45117 1.39757 1.05020 1.46548 1.20704 0.88616 0.87244 0.97509 1.19038 0.92015 0.89375 0.96805 1.20278 0.92867 1.44745 0.96293 0.92185 1.24984 0.97866 0.94670 0.95251 1.69981 1.35969 1.46047 0.98423 0.86663 0.84772 0.78853 0.78140 1.20695 1.21171 1.19787 1.23085 1.02452 1.05827 0.93442 1.22499 1.01591 1.00076 0.94881 1.22493 1.04338 0.95491 0.96888 1.20974 0.76153 0.87922 0.84280 1.90724 1.53534 1.75639 1.21210 0.91408 0.92226 0.92306 0.90267 0.90036 0.89867 0.90320 0.91171 0.91416 0.77192 0.76394 0.91704 0.94825 0.92839 0.91577 0.90448 0.89941 0.91650 0.87686 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.85 6.66 -4.04 -0.03 0.83 16 3 N -0.62 -5.28 2.93 -172.41 -0.51 -5.78 16 4 C 0.11 0.72 6.91 -3.12 -0.02 0.69 16 5 C -0.11 -0.83 3.16 -88.99 -0.28 -1.12 16 6 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 7 C 0.15 1.59 4.98 -4.04 -0.02 1.57 16 8 N -0.75 -9.90 5.50 -65.23 -0.36 -10.26 16 9 C 0.70 13.03 8.57 -86.92 -0.74 12.28 16 10 O -0.61 -13.62 16.34 5.29 0.09 -13.53 16 11 N -0.71 -13.96 5.34 -65.23 -0.35 -14.31 16 12 C 0.18 4.11 5.75 -4.04 -0.02 4.08 16 13 C 0.03 0.65 1.71 -155.66 -0.27 0.39 16 14 C -0.50 -12.43 7.44 -34.44 -0.26 -12.68 16 15 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 16 C 0.08 1.98 5.39 -17.82 -0.10 1.88 16 17 N -0.87 -23.50 12.97 55.43 0.72 -22.78 16 18 Si 0.89 19.79 29.55 -169.99 -5.02 14.77 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.21 -4.35 9.88 -26.73 -0.26 -4.61 16 23 C -0.15 -3.43 9.51 -26.73 -0.25 -3.68 16 24 C -0.15 -1.31 6.36 -26.74 -0.17 -1.48 16 25 C 0.52 5.75 8.02 -10.86 -0.09 5.66 16 26 O -0.53 -8.09 17.59 5.55 0.10 -7.99 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.74 7.93 -51.92 -0.41 0.32 16 36 H 0.39 4.25 8.49 -40.82 -0.35 3.91 16 37 H 0.40 7.36 7.47 -40.82 -0.30 7.05 16 38 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 40 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 41 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.11 0.94 7.75 -51.93 -0.40 0.54 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -32.45 383.42 -9.42 -41.87 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.74 Total: 9.15 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.13 Total: 3.09 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.49 Total: -53.13 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.18 Total: -21.53 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.45 -9.42 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593398989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.115 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds