Wall clock time and date at job start Fri Apr 10 2020 18:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47213 * 2 1 4 4 C 1.46758 * 124.35217 * 90.00078 * 3 2 1 5 5 C 1.54483 * 105.47590 * 197.01803 * 4 3 2 6 6 H 1.08999 * 110.96717 * 92.73988 * 5 4 3 7 7 C 1.52997 * 110.96943 * 216.46181 * 5 4 3 8 8 N 1.46498 * 109.47186 * 184.99824 * 7 5 4 9 9 C 1.34778 * 120.00066 * 180.02562 * 8 7 5 10 10 O 1.21581 * 120.00092 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99787 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99991 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47046 * 181.14775 * 12 11 9 14 14 C 1.50700 * 115.55347 * 39.67765 * 13 12 11 15 15 H 1.08000 * 120.00107 * 264.53059 * 14 13 12 16 16 C 1.37883 * 119.99669 * 84.53467 * 14 13 12 17 17 N 1.31511 * 120.00023 * 352.92526 * 16 14 13 18 18 Si 1.86805 * 119.99584 * 172.92523 * 16 14 13 19 19 H 1.48507 * 109.46961 * 89.99794 * 18 16 14 20 20 H 1.48493 * 109.46800 * 209.99419 * 18 16 14 21 21 H 1.48493 * 109.47209 * 330.00030 * 18 16 14 22 22 C 1.53001 * 117.49728 * 253.96612 * 13 12 11 23 23 C 1.52993 * 60.00330 * 252.51275 * 22 13 12 24 24 C 1.54622 * 101.76220 * 334.58381 * 5 4 3 25 25 C 1.34417 * 124.34818 * 269.70340 * 3 2 1 26 26 O 1.21284 * 124.94206 * 359.57105 * 25 3 2 27 27 H 1.08998 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47174 * 59.99762 * 1 2 3 29 29 H 1.09000 * 109.47027 * 299.99943 * 1 2 3 30 30 H 1.08999 * 109.47359 * 119.99723 * 2 1 3 31 31 H 1.09000 * 109.47027 * 240.00057 * 2 1 3 32 32 H 1.09001 * 110.24362 * 316.01686 * 4 3 2 33 33 H 1.08997 * 110.24795 * 77.92686 * 4 3 2 34 34 H 1.09000 * 109.47243 * 305.00467 * 7 5 4 35 35 H 1.09007 * 109.47074 * 65.00075 * 7 5 4 36 36 H 0.97001 * 119.99633 * 0.02562 * 8 7 5 37 37 H 0.97001 * 120.00496 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46725 * 301.14360 * 12 11 9 39 39 H 1.08991 * 109.47211 * 61.14604 * 12 11 9 40 40 H 0.97003 * 119.99377 * 185.03675 * 17 16 14 41 41 H 1.09004 * 117.50124 * 0.02562 * 22 13 12 42 42 H 1.09005 * 117.49950 * 145.01869 * 22 13 12 43 43 H 1.08994 * 117.50157 * 252.50866 * 23 22 13 44 44 H 1.09000 * 117.49675 * 107.49171 * 23 22 13 45 45 H 1.09003 * 110.48857 * 143.47517 * 24 5 4 46 46 H 1.09000 * 110.48636 * 265.98310 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3529 3.6346 0.7486 6 1 1.3783 4.1129 0.8453 7 6 3.4197 4.4104 1.5239 8 7 3.3665 5.8247 1.1457 9 6 4.2205 6.7045 1.7052 10 8 5.0354 6.3243 2.5235 11 7 4.1719 8.0055 1.3569 12 6 5.1006 8.9618 1.9646 13 6 4.8169 10.3637 1.4216 14 6 3.3609 10.7102 1.2453 15 1 2.8884 10.5836 0.2824 16 6 2.6321 11.1890 2.3133 17 7 3.1651 11.2126 3.5153 18 14 0.8876 11.8042 2.0527 19 1 -0.0653 10.6785 2.2265 20 1 0.5843 12.8670 3.0444 21 1 0.7571 12.3558 0.6802 22 6 5.8090 10.9442 0.4117 23 6 5.7652 11.4889 1.8407 24 6 2.7504 3.4821 -0.7379 25 6 2.2766 2.0943 -1.1098 26 8 2.1462 1.6856 -2.2442 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.4933 2.0266 1.9382 33 1 3.2493 1.8628 1.6437 34 1 3.2342 4.3130 2.5936 35 1 4.4049 4.0080 1.2879 36 1 2.7166 6.1279 0.4926 37 1 3.5220 8.3088 0.7038 38 1 4.9695 8.9580 3.0468 39 1 6.1246 8.6784 1.7217 40 1 2.6291 11.4804 4.2783 41 1 6.6636 10.3271 0.1340 42 1 5.4087 11.5767 -0.3806 43 1 5.3360 12.4798 1.9887 44 1 6.5911 11.2304 2.5034 45 1 2.2490 4.2351 -1.3460 46 1 3.8316 3.5579 -0.8534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593398989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:42 Heat of formation + Delta-G solvation = -68.819098 kcal Electronic energy + Delta-G solvation = -25400.032735 eV Core-core repulsion = 21710.191635 eV Total energy + Delta-G solvation = -3689.841100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59395 -40.72941 -38.56623 -37.84137 -36.22099 -34.84343 -34.11735 -33.94806 -30.90230 -29.12268 -28.03748 -27.25294 -25.79863 -24.10517 -22.90722 -21.96224 -21.69489 -21.21948 -20.36143 -19.01085 -18.17529 -17.95883 -17.39186 -16.80851 -16.62867 -16.36591 -16.28814 -15.74347 -15.33314 -15.21413 -14.86815 -14.75595 -14.63675 -14.35879 -14.19976 -13.92564 -13.44843 -13.42888 -13.31328 -13.08313 -12.87124 -12.80438 -12.75374 -12.31641 -12.27880 -12.02851 -11.98140 -11.92693 -11.48109 -11.18417 -10.86444 -10.78776 -10.42803 -10.22338 -9.96858 -9.74890 -9.42687 -8.06150 -6.19641 1.44448 1.49404 1.51610 1.56705 1.86119 2.12437 2.36531 2.45276 3.21456 3.29064 3.36643 3.50698 3.66955 3.78822 4.00342 4.13723 4.26415 4.31349 4.35125 4.49255 4.57923 4.60094 4.65066 4.71758 4.72895 4.75075 4.80838 4.86167 4.92802 4.98009 5.04431 5.10802 5.18306 5.26785 5.30938 5.54132 5.58444 5.64759 5.66286 5.79794 5.85896 6.08656 6.26405 6.42206 6.88221 7.11720 7.35634 7.50336 7.80199 9.01266 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.002746 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.333573 B =10194.558256 C =10800.498770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.095 4.095 6 H 0.114 0.886 7 C 0.154 3.846 8 N -0.735 5.735 9 C 0.695 3.305 10 O -0.648 6.648 11 N -0.712 5.712 12 C 0.198 3.802 13 C 0.007 3.993 14 C -0.504 4.504 15 H 0.066 0.934 16 C 0.031 3.969 17 N -0.904 5.904 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.295 1.295 21 H -0.266 1.266 22 C -0.181 4.181 23 C -0.164 4.164 24 C -0.148 4.148 25 C 0.509 3.491 26 O -0.585 6.585 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.409 0.591 37 H 0.407 0.593 38 H 0.024 0.976 39 H 0.037 0.963 40 H 0.258 0.742 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 -18.983 -4.543 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.012 4.012 5 C -0.115 4.115 6 H 0.132 0.868 7 C 0.030 3.970 8 N -0.392 5.392 9 C 0.394 3.606 10 O -0.531 6.531 11 N -0.365 5.365 12 C 0.073 3.927 13 C 0.006 3.994 14 C -0.541 4.541 15 H 0.084 0.916 16 C -0.170 4.170 17 N -0.541 5.541 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.190 1.190 22 C -0.218 4.218 23 C -0.202 4.202 24 C -0.188 4.188 25 C 0.298 3.702 26 O -0.466 6.466 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.245 0.755 37 H 0.244 0.756 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.129 0.871 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.382 -19.512 -4.190 20.433 hybrid contribution -1.300 0.929 -0.297 1.625 sum -5.682 -18.583 -4.488 19.944 Atomic orbital electron populations 1.22110 0.95140 1.03214 1.01751 1.21519 0.94871 0.80492 1.03792 1.48512 1.64622 1.14489 1.07329 1.22204 1.03947 0.88345 0.86730 1.22260 1.00507 0.95655 0.93043 0.86818 1.21126 0.98413 0.78335 0.99153 1.44874 1.38678 1.07943 1.47734 1.16187 0.81729 0.81550 0.81108 1.90829 1.43124 1.79516 1.39632 1.44946 1.39682 1.05234 1.46677 1.20338 0.89428 0.87759 0.95208 1.19123 0.91951 0.89628 0.98695 1.20566 0.93697 1.43618 0.96253 0.91558 1.25663 1.01293 0.95050 0.95038 1.70117 1.37232 1.47669 0.99110 0.85713 0.80867 0.78083 0.77886 1.20046 1.22120 1.19020 1.23078 1.01858 1.04622 0.92282 1.22439 1.01839 0.99046 0.96874 1.22483 1.04327 0.94309 0.97708 1.21384 0.75812 0.88943 0.84090 1.90692 1.55953 1.76762 1.23222 0.89836 0.94670 0.91339 0.87438 0.91626 0.87479 0.89129 0.91291 0.91697 0.75495 0.75616 0.95730 0.94508 0.93322 0.89375 0.89766 0.91881 0.91157 0.87121 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.24 71.98 0.74 -1.11 16 2 C 0.11 1.41 6.66 86.38 0.57 1.99 16 3 N -0.62 -9.31 2.93 -817.99 -2.40 -11.71 16 4 C 0.11 1.08 6.91 86.83 0.60 1.68 16 5 C -0.10 -1.15 3.16 -9.74 -0.03 -1.18 16 6 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 7 C 0.15 2.84 4.98 86.38 0.43 3.27 16 8 N -0.74 -17.87 5.50 -478.54 -2.63 -20.51 16 9 C 0.69 25.31 8.57 179.06 1.53 26.85 16 10 O -0.65 -28.90 16.34 -3.97 -0.06 -28.96 16 11 N -0.71 -27.40 5.34 -478.55 -2.55 -29.96 16 12 C 0.20 8.89 5.75 86.38 0.50 9.39 16 13 C 0.01 0.31 1.71 -52.93 -0.09 0.22 16 14 C -0.50 -24.37 7.44 25.60 0.19 -24.18 16 15 H 0.07 3.07 7.82 -2.91 -0.02 3.04 16 16 C 0.03 1.57 5.39 84.66 0.46 2.02 16 17 N -0.90 -49.57 12.97 21.45 0.28 -49.29 16 18 Si 0.95 40.22 29.55 68.60 2.03 42.24 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 C -0.18 -7.15 9.88 30.59 0.30 -6.84 16 23 C -0.16 -7.35 9.51 30.59 0.29 -7.06 16 24 C -0.15 -2.30 6.36 30.59 0.19 -2.11 16 25 C 0.51 10.87 8.02 87.90 0.71 11.57 16 26 O -0.59 -18.03 17.59 -3.04 -0.05 -18.08 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.04 7.92 -2.39 -0.02 1.02 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.75 7.89 -2.39 -0.02 0.73 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.29 7.93 -2.38 -0.02 1.27 16 36 H 0.41 7.78 8.49 -92.71 -0.79 6.99 16 37 H 0.41 14.40 7.47 -92.71 -0.69 13.71 16 38 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 40 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 41 H 0.09 3.09 8.08 -2.39 -0.02 3.07 16 42 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.11 1.73 7.75 -2.39 -0.02 1.71 16 Total: -1.00 -71.39 383.42 0.49 -70.90 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.50 Total: 30.87 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.39 Total: 14.50 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -7.31 Total: -111.46 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.12 Total: -47.05 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Total: -71.39 0.49 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593398989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.078 kcal (2) G-P(sol) polarization free energy of solvation -71.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds