Wall clock time and date at job start Fri Apr 10 2020 18:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 O 1.42903 * 109.47029 * 120.00076 * 2 1 3 5 5 C 1.53001 * 109.47363 * 240.00001 * 2 1 3 6 6 N 1.46896 * 109.47188 * 180.02562 * 5 2 1 7 7 C 1.46901 * 110.99850 * 190.00405 * 6 5 2 8 8 C 1.50699 * 109.47398 * 75.93423 * 7 6 5 9 9 O 1.21280 * 120.00051 * 5.46314 * 8 7 6 10 10 N 1.34781 * 119.99978 * 185.46557 * 8 7 6 11 11 C 1.46496 * 119.99848 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47364 * 90.00326 * 11 10 8 13 13 H 1.08007 * 119.99834 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00309 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99853 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47053 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47137 * 119.99777 * 16 14 12 19 19 H 1.48495 * 109.47476 * 239.99466 * 16 14 12 20 20 C 1.46500 * 120.00056 * 0.02562 * 10 8 7 21 21 C 1.52993 * 109.47215 * 89.99588 * 20 10 8 22 22 C 1.47206 * 109.47280 * 179.97438 * 21 20 10 23 23 N 8.51272 * 109.41633 * 232.39686 * 2 1 3 24 24 C 1.46890 * 111.00140 * 66.04789 * 6 5 2 25 25 C 1.53001 * 117.50219 * 247.14684 * 24 6 5 26 26 C 1.52995 * 59.99960 * 252.50656 * 25 24 6 27 27 H 1.09005 * 109.47222 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47623 * 299.99879 * 1 2 3 29 29 H 1.09007 * 109.47231 * 60.00048 * 1 2 3 30 30 H 0.96705 * 113.99501 * 60.00247 * 4 2 1 31 31 H 1.09007 * 109.46894 * 60.00350 * 5 2 1 32 32 H 1.08992 * 109.47259 * 300.00637 * 5 2 1 33 33 H 1.09000 * 109.46992 * 315.93034 * 7 6 5 34 34 H 1.09002 * 109.46838 * 195.93462 * 7 6 5 35 35 H 1.09005 * 109.47220 * 210.00365 * 11 10 8 36 36 H 1.09004 * 109.47128 * 330.00036 * 11 10 8 37 37 H 0.96999 * 119.99962 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.46762 * 210.00050 * 20 10 8 39 39 H 1.08998 * 109.46872 * 329.99576 * 20 10 8 40 40 H 1.08998 * 109.47617 * 300.00437 * 21 20 10 41 41 H 1.09006 * 109.47154 * 60.00531 * 21 20 10 42 42 H 1.08999 * 115.55120 * 32.85731 * 24 6 5 43 43 H 1.09000 * 117.49747 * 0.02562 * 25 24 6 44 44 H 1.09001 * 117.49964 * 145.01991 * 25 24 6 45 45 H 1.08998 * 117.50222 * 252.50158 * 26 25 24 46 46 H 1.09001 * 117.49716 * 107.48622 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 3.5090 -0.7218 -1.2489 7 6 4.0355 -1.1907 -2.5376 8 6 3.8938 -0.0981 -3.5658 9 8 3.4951 0.9983 -3.2345 10 7 4.2102 -0.3394 -4.8535 11 6 4.0719 0.7226 -5.8531 12 6 5.3611 1.4974 -5.9446 13 1 6.1996 1.2261 -5.3201 14 6 5.4700 2.5532 -6.8245 15 7 4.4489 2.8838 -7.5845 16 14 7.0680 3.5141 -6.9373 17 1 8.0554 2.9461 -5.9846 18 1 7.6045 3.4221 -8.3191 19 1 6.8147 4.9375 -6.5986 20 6 4.6912 -1.6640 -5.2538 21 6 3.5013 -2.5409 -5.6486 22 6 3.9847 -3.8717 -6.0514 23 7 4.3598 -4.8989 -6.3607 24 6 4.0349 -1.5291 -0.1401 25 6 4.7801 -0.7954 0.9767 26 6 5.5545 -1.6599 -0.0201 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.7209 -1.5953 1.2328 31 1 1.6767 -0.2073 -2.1393 32 1 1.6767 -1.7488 -1.2493 33 1 3.4762 -2.0686 -2.8608 34 1 5.0882 -1.4511 -2.4269 35 1 3.8438 0.2810 -6.8233 36 1 3.2644 1.3939 -5.5607 37 1 4.5256 3.6264 -8.2039 38 1 5.3665 -1.5638 -6.1035 39 1 5.2217 -2.1250 -4.4206 40 1 2.8260 -2.6411 -4.7989 41 1 2.9709 -2.0800 -6.4819 42 1 3.4318 -2.3928 0.1399 43 1 4.8798 0.2865 0.8888 44 1 4.6673 -1.1762 1.9917 45 1 5.9512 -2.6095 0.3391 46 1 6.1641 -1.1469 -0.7640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594055670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:02:58 Heat of formation + Delta-G solvation = -44.363487 kcal Electronic energy + Delta-G solvation = -26472.158125 eV Core-core repulsion = 22783.377500 eV Total energy + Delta-G solvation = -3688.780625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98041 -39.54509 -37.94819 -37.54494 -36.61394 -35.01685 -34.68199 -32.16005 -31.96474 -29.92752 -28.14055 -25.93317 -25.28587 -24.22078 -23.01245 -22.54948 -21.36636 -19.81426 -18.80466 -18.32389 -17.96064 -17.61167 -17.09753 -16.75621 -16.38195 -16.29380 -15.96633 -15.73744 -15.48552 -15.04128 -14.83362 -14.54874 -14.31396 -14.05869 -13.63295 -13.53884 -13.47071 -13.42838 -13.21878 -13.09345 -12.92984 -12.70309 -12.62095 -12.52083 -12.42019 -12.17561 -12.10193 -11.85461 -11.68133 -11.61949 -11.34256 -11.10341 -10.64739 -10.58032 -10.30470 -9.42389 -9.04585 -8.17076 -6.28716 1.38489 1.41569 1.51673 1.69534 1.83823 1.97037 2.23607 2.43931 2.87056 3.08222 3.13818 3.19614 3.61602 3.81892 3.97356 4.08597 4.12427 4.17878 4.22908 4.25142 4.30873 4.35144 4.45306 4.54554 4.57641 4.70012 4.80145 4.84780 4.92733 4.93377 4.98082 5.06170 5.13867 5.25462 5.26990 5.36205 5.36671 5.47362 5.63910 5.90005 6.05950 6.15691 6.34102 6.60645 6.79787 6.87192 7.02139 7.37442 7.62742 8.89568 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.004388 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.082141 B = 6380.212469 C = 7557.224268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.117 3.883 3 H 0.069 0.931 4 O -0.557 6.557 5 C 0.037 3.963 6 N -0.518 5.518 7 C 0.047 3.953 8 C 0.501 3.499 9 O -0.570 6.570 10 N -0.601 5.601 11 C 0.262 3.738 12 C -0.537 4.537 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.955 3.045 17 H -0.269 1.269 18 H -0.272 1.272 19 H -0.286 1.286 20 C 0.114 3.886 21 C -0.037 4.037 22 C 0.246 3.754 23 N -0.488 5.488 24 C 0.032 3.968 25 C -0.142 4.142 26 C -0.188 4.188 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.379 0.621 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.034 0.966 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -14.171 14.532 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.057 3.943 3 H 0.087 0.913 4 O -0.364 6.364 5 C -0.091 4.091 6 N -0.242 5.242 7 C -0.084 4.084 8 C 0.289 3.711 9 O -0.448 6.448 10 N -0.333 5.333 11 C 0.141 3.859 12 C -0.576 4.576 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.781 3.219 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.212 1.212 20 C -0.011 4.011 21 C -0.078 4.078 22 C -0.072 4.072 23 N -0.166 5.166 24 C -0.076 4.076 25 C -0.180 4.180 26 C -0.226 4.226 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.152 0.848 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.124 0.876 45 H 0.134 0.866 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.677 -13.937 14.272 20.489 hybrid contribution 0.109 0.442 -0.839 0.954 sum -4.568 -13.495 13.433 19.581 Atomic orbital electron populations 1.22382 0.94894 1.03443 1.02585 1.21612 0.92929 0.95881 0.83846 0.91304 1.86692 1.76935 1.29432 1.43316 1.22793 0.86655 1.00063 0.99613 1.61102 1.08239 1.53620 1.01255 1.22054 1.03424 0.94412 0.88471 1.21222 0.77058 0.89685 0.83135 1.90663 1.47133 1.27066 1.79988 1.48107 1.64860 1.12309 1.08038 1.18753 0.95302 0.85420 0.86442 1.21784 0.99557 1.15233 1.20982 0.93111 1.25690 0.99695 0.97955 0.95381 1.70024 1.31903 1.29548 1.25132 0.85548 0.79938 0.78294 0.78114 1.19388 1.19785 1.21168 1.21484 0.95140 0.81519 1.02927 1.19824 0.99457 0.83009 1.05476 1.29156 0.92113 0.94213 0.91683 1.81274 1.10231 1.14058 1.11062 1.22332 0.93340 0.97471 0.94483 1.22753 1.02612 0.97653 0.95013 1.23254 0.93479 1.02675 1.03173 0.90438 0.91723 0.92203 0.77250 0.91894 0.91950 0.88827 0.87000 0.94840 0.97921 0.92633 0.89922 0.87889 0.84757 0.86188 0.87060 0.91768 0.87620 0.86577 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 9.53 71.98 0.69 -2.17 16 2 C 0.12 2.48 3.82 30.59 0.12 2.59 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 O -0.56 -10.07 9.93 -148.98 -1.48 -11.55 16 5 C 0.04 0.80 4.43 86.30 0.38 1.18 16 6 N -0.52 -12.91 4.18 -875.55 -3.66 -16.57 16 7 C 0.05 1.12 3.90 85.56 0.33 1.46 16 8 C 0.50 18.10 7.23 87.66 0.63 18.73 16 9 O -0.57 -27.23 15.10 -3.03 -0.05 -27.28 16 10 N -0.60 -21.39 2.46 -826.18 -2.03 -23.42 16 11 C 0.26 12.64 5.16 85.63 0.44 13.08 16 12 C -0.54 -29.23 9.39 25.60 0.24 -28.99 16 13 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 14 C 0.01 0.66 5.46 84.65 0.46 1.12 16 15 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16 16 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 C 0.11 2.74 5.09 86.38 0.44 3.18 16 21 C -0.04 -0.63 5.97 28.79 0.17 -0.46 16 22 C 0.25 5.13 15.44 89.44 1.38 6.51 16 23 N -0.49 -13.12 18.54 20.01 0.37 -12.75 16 24 C 0.03 0.60 3.47 44.92 0.16 0.75 16 25 C -0.14 -2.98 9.20 30.59 0.28 -2.70 16 26 C -0.19 -3.49 9.50 30.59 0.29 -3.20 16 27 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.38 3.76 8.50 -74.05 -0.63 3.13 16 31 H 0.06 1.75 6.90 -2.38 -0.02 1.73 16 32 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 33 H 0.09 1.53 6.75 -2.39 -0.02 1.52 16 34 H 0.11 2.47 5.81 -2.39 -0.01 2.45 16 35 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 36 H 0.00 0.15 7.42 -2.38 -0.02 0.13 16 37 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.08 2.21 8.07 -2.39 -0.02 2.20 16 39 H 0.10 1.90 6.59 -2.39 -0.02 1.88 16 40 H 0.13 1.59 7.13 -2.39 -0.02 1.58 16 41 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.11 1.49 7.40 -2.39 -0.02 1.48 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.76 7.25 -2.39 -0.02 1.74 16 Total: -1.00 -75.99 381.18 1.84 -74.16 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.35 Total: 13.74 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.02 Total: 11.09 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -5.04 Total: -106.40 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.53 Total: -38.83 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -75.99 1.84 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594055670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.793 kcal (2) G-P(sol) polarization free energy of solvation -75.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds