Wall clock time and date at job start Fri Apr 10 2020 18:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.47008 * 2 1 4 4 C 1.50698 * 109.46981 * 239.99885 * 2 1 3 5 5 O 1.21234 * 119.99778 * 254.69430 * 4 2 1 6 6 N 1.34776 * 120.00202 * 74.69399 * 4 2 1 7 7 C 1.34771 * 120.00359 * 180.02562 * 6 4 2 8 8 O 1.21541 * 119.99808 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00359 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00161 * 179.97438 * 9 7 6 11 11 C 1.53000 * 117.50158 * 223.74835 * 10 9 7 12 12 C 1.52998 * 117.49898 * 155.08722 * 10 9 7 13 13 N 1.46895 * 109.46838 * 120.00205 * 2 1 3 14 14 C 1.46856 * 110.99966 * 283.55530 * 13 2 1 15 15 C 1.53035 * 109.52660 * 185.84240 * 14 13 2 16 16 C 1.53124 * 109.27834 * 300.82291 * 15 14 13 17 17 C 1.53119 * 109.15738 * 57.65236 * 16 15 14 18 18 H 1.09006 * 109.53842 * 62.30746 * 17 16 15 19 19 C 1.50707 * 109.50107 * 182.40299 * 17 16 15 20 20 H 1.08000 * 119.99934 * 119.53318 * 19 17 16 21 21 C 1.37878 * 120.00026 * 299.80414 * 19 17 16 22 22 N 1.31516 * 119.99875 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99801 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47453 * 60.00273 * 23 21 19 25 25 H 1.48497 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47416 * 300.00010 * 23 21 19 27 27 C 1.46846 * 111.00609 * 47.76772 * 13 2 1 28 28 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47108 * 300.00311 * 1 2 3 30 30 H 1.08995 * 109.46864 * 60.00007 * 1 2 3 31 31 H 0.97002 * 119.99775 * 359.97438 * 6 4 2 32 32 H 0.97007 * 119.99849 * 0.02562 * 9 7 6 33 33 H 1.09003 * 115.54829 * 9.41992 * 10 9 7 34 34 H 1.08999 * 117.49729 * 359.97438 * 11 10 9 35 35 H 1.08996 * 117.50398 * 145.02174 * 11 10 9 36 36 H 1.09000 * 117.50155 * 214.98042 * 12 10 9 37 37 H 1.08998 * 117.49874 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46446 * 305.86302 * 14 13 2 39 39 H 1.09004 * 109.46046 * 65.82764 * 14 13 2 40 40 H 1.08999 * 109.50035 * 60.76197 * 15 14 13 41 41 H 1.08993 * 109.50572 * 180.88355 * 15 14 13 42 42 H 1.09000 * 109.52526 * 297.75072 * 16 15 14 43 43 H 1.09001 * 109.52394 * 177.55376 * 16 15 14 44 44 H 0.97001 * 119.99580 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.45977 * 54.14571 * 27 13 2 46 46 H 1.08998 * 109.45229 * 294.17224 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4957 -1.8270 -1.1390 6 7 1.9665 -0.1045 -2.4325 7 6 2.4153 -0.7401 -3.5330 8 8 2.8798 -1.8595 -3.4414 9 7 2.3489 -0.1344 -4.7352 10 6 2.8372 -0.8250 -5.9313 11 6 3.6816 -0.0168 -6.9186 12 6 2.2460 -0.4071 -7.2792 13 7 2.0197 -0.6925 1.1994 14 6 1.8921 0.1601 2.3883 15 6 2.5423 -0.5337 3.5874 16 6 1.8545 -1.8808 3.8262 17 6 1.9597 -2.7307 2.5568 18 1 3.0088 -2.9287 2.3366 19 6 1.2341 -4.0353 2.7633 20 1 0.4011 -4.2964 2.1274 21 6 1.6300 -4.8930 3.7676 22 7 2.6407 -4.5723 4.5457 23 14 0.7301 -6.5096 4.0239 24 1 0.8279 -7.3316 2.7910 25 1 1.3457 -7.2444 5.1581 26 1 -0.6983 -6.2386 4.3261 27 6 1.3264 -1.9733 1.3876 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.5955 0.7887 -2.5057 32 1 1.9785 0.7592 -4.8083 33 1 3.0894 -1.8769 -5.7968 34 1 3.8734 1.0289 -6.6783 35 1 4.4890 -0.5369 -7.4339 36 1 2.1097 -1.1839 -8.0316 37 1 1.4935 0.3814 -7.2759 38 1 2.3889 1.1131 2.2068 39 1 0.8369 0.3350 2.5982 40 1 3.6007 -0.6965 3.3837 41 1 2.4337 0.0923 4.4730 42 1 0.8046 -1.7160 4.0681 43 1 2.3429 -2.3978 4.6522 44 1 2.9190 -5.1756 5.2525 45 1 1.4124 -2.5697 0.4793 46 1 0.2739 -1.7882 1.6023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:47 Heat of formation + Delta-G solvation = -26.895807 kcal Electronic energy + Delta-G solvation = -26291.829274 eV Core-core repulsion = 22603.806104 eV Total energy + Delta-G solvation = -3688.023170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.19627 -39.31823 -37.96345 -36.86695 -34.64497 -34.11376 -32.74323 -32.16726 -29.79050 -29.07511 -25.58304 -24.87738 -23.68718 -22.78437 -22.02780 -21.41075 -21.02070 -20.22828 -18.99419 -18.29043 -17.07140 -16.35680 -16.34381 -15.95401 -15.25933 -14.90521 -14.69274 -14.48659 -14.21322 -14.12519 -13.85778 -13.41840 -13.07766 -12.85960 -12.55039 -12.34119 -12.13726 -12.00263 -11.80486 -11.64692 -11.56089 -11.37675 -10.89792 -10.83271 -10.81188 -10.59814 -10.52787 -10.07626 -9.98637 -9.76529 -9.49099 -9.33101 -9.07323 -8.86226 -8.55493 -8.19409 -7.65523 -5.86260 -3.91108 2.15787 2.23312 3.19182 3.40483 3.44447 3.47983 3.62292 3.63360 4.37637 4.39524 4.56649 4.57499 4.61071 4.65488 5.04978 5.08128 5.22212 5.36406 5.43693 5.49925 5.52196 5.59251 5.67054 5.70473 5.83512 6.00499 6.02604 6.14438 6.21236 6.27544 6.44299 6.48594 6.66178 6.73743 6.81502 7.14097 7.28673 7.35607 7.47228 7.65648 7.80521 7.87426 8.20608 8.25643 8.29276 8.32802 8.60150 9.12439 9.72095 11.20157 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003200 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.036688 B = 8747.537180 C = 9746.616679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.070 3.930 3 H 0.100 0.900 4 C 0.516 3.484 5 O -0.429 6.429 6 N -0.693 5.693 7 C 0.696 3.304 8 O -0.524 6.524 9 N -0.714 5.714 10 C 0.098 3.902 11 C -0.195 4.195 12 C -0.190 4.190 13 N -0.519 5.519 14 C 0.064 3.936 15 C -0.117 4.117 16 C -0.112 4.112 17 C 0.057 3.943 18 H 0.035 0.965 19 C -0.510 4.510 20 H 0.052 0.948 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.890 3.110 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.061 3.939 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.405 0.595 32 H 0.397 0.603 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.259 0.741 45 H 0.078 0.922 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 17.739 -18.200 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.118 0.882 4 C 0.300 3.700 5 O -0.292 6.292 6 N -0.361 5.361 7 C 0.397 3.603 8 O -0.395 6.395 9 N -0.370 5.370 10 C -0.008 4.008 11 C -0.234 4.234 12 C -0.229 4.229 13 N -0.243 5.243 14 C -0.063 4.063 15 C -0.155 4.155 16 C -0.150 4.150 17 C 0.038 3.962 18 H 0.053 0.947 19 C -0.549 4.549 20 H 0.070 0.930 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.205 1.205 27 C -0.065 4.065 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.239 0.761 32 H 0.231 0.769 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.924 15.743 -17.870 23.894 hybrid contribution -1.765 0.469 0.061 1.827 sum -3.690 16.212 -17.810 24.364 Atomic orbital electron populations 1.22409 0.95113 1.04010 1.02555 1.21566 0.94261 0.98090 0.90429 0.88219 1.21000 0.78899 0.87126 0.82959 1.90874 1.36869 1.17340 1.84144 1.44298 1.62595 1.21241 1.07928 1.16102 0.79343 0.84731 0.80157 1.91100 1.46794 1.17113 1.84455 1.44597 1.67160 1.19865 1.05337 1.21479 1.01493 0.97750 0.80093 1.23473 0.94662 1.01549 1.03671 1.23419 0.96685 1.04232 0.98531 1.61950 1.57163 1.04828 1.00407 1.22080 0.98328 0.95046 0.90860 1.21673 1.00734 0.98487 0.94588 1.21679 0.97695 0.92612 1.02983 1.18631 0.97043 0.92001 0.88517 0.94676 1.21101 1.15664 1.02810 1.15283 0.93011 1.24918 0.95072 0.97883 0.95995 1.69885 1.26748 1.36640 1.19643 0.86700 0.79789 0.84111 0.77626 1.20282 1.21371 1.20473 1.22540 0.94150 0.87684 1.02140 0.90784 0.90970 0.92270 0.76108 0.76861 0.84122 0.88492 0.87843 0.87739 0.88480 0.92373 0.95445 0.91986 0.93373 0.95204 0.89095 0.93119 0.90395 0.96128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.30 37.16 0.31 -1.85 16 2 C 0.07 0.97 2.70 -68.86 -0.19 0.79 16 3 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 4 C 0.52 8.31 6.91 -10.99 -0.08 8.24 16 5 O -0.43 -9.66 12.71 -18.21 -0.23 -9.90 16 6 N -0.69 -7.87 5.24 -15.78 -0.08 -7.96 16 7 C 0.70 9.47 8.50 -86.92 -0.74 8.73 16 8 O -0.52 -10.32 14.31 -18.48 -0.26 -10.58 16 9 N -0.71 -6.20 5.57 -58.69 -0.33 -6.53 16 10 C 0.10 0.85 6.43 -67.93 -0.44 0.41 16 11 C -0.19 -1.21 10.46 -26.69 -0.28 -1.49 16 12 C -0.19 -1.09 10.46 -26.69 -0.28 -1.37 16 13 N -0.52 -9.73 4.35 -228.08 -0.99 -10.72 16 14 C 0.06 1.08 5.22 -3.83 -0.02 1.06 16 15 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 16 C -0.11 -2.70 5.03 -26.61 -0.13 -2.83 16 17 C 0.06 1.51 2.26 -91.69 -0.21 1.30 16 18 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.51 -14.77 8.56 -34.44 -0.29 -15.06 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 22 N -0.89 -26.45 11.36 55.43 0.63 -25.82 16 23 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.06 1.37 3.39 -3.84 -0.01 1.36 16 28 H 0.07 1.08 6.45 -51.93 -0.33 0.75 16 29 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 2.39 8.71 -40.82 -0.36 2.04 16 32 H 0.40 1.91 8.84 -40.82 -0.36 1.55 16 33 H 0.14 1.53 7.40 -51.93 -0.38 1.14 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.81 7.95 -51.93 -0.41 0.39 16 39 H 0.03 0.44 7.13 -51.93 -0.37 0.07 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.08 1.94 5.90 -51.93 -0.31 1.63 16 46 H 0.02 0.45 6.59 -51.93 -0.34 0.11 16 LS Contribution 363.42 15.07 5.48 5.48 Total: -1.00 -37.55 363.42 -10.73 -48.29 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.31 Total: 1.94 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.61 Total: -1.46 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.77 Total: -51.02 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.50 Total: -20.48 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.55 -10.73 -48.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.390 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds