Wall clock time and date at job start Fri Apr 10 2020 18:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.47008 * 2 1 4 4 C 1.50698 * 109.46981 * 239.99885 * 2 1 3 5 5 O 1.21234 * 119.99778 * 254.69430 * 4 2 1 6 6 N 1.34776 * 120.00202 * 74.69399 * 4 2 1 7 7 C 1.34771 * 120.00359 * 180.02562 * 6 4 2 8 8 O 1.21541 * 119.99808 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00359 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00161 * 179.97438 * 9 7 6 11 11 C 1.53000 * 117.50158 * 223.74835 * 10 9 7 12 12 C 1.52998 * 117.49898 * 155.08722 * 10 9 7 13 13 N 1.46895 * 109.46838 * 120.00205 * 2 1 3 14 14 C 1.46856 * 110.99966 * 283.55530 * 13 2 1 15 15 C 1.53035 * 109.52660 * 185.84240 * 14 13 2 16 16 C 1.53124 * 109.27834 * 300.82291 * 15 14 13 17 17 C 1.53119 * 109.15738 * 57.65236 * 16 15 14 18 18 H 1.09006 * 109.53842 * 62.30746 * 17 16 15 19 19 C 1.50707 * 109.50107 * 182.40299 * 17 16 15 20 20 H 1.08000 * 119.99934 * 119.53318 * 19 17 16 21 21 C 1.37878 * 120.00026 * 299.80414 * 19 17 16 22 22 N 1.31516 * 119.99875 * 0.02562 * 21 19 17 23 23 Si 1.86794 * 119.99801 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47453 * 60.00273 * 23 21 19 25 25 H 1.48497 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47416 * 300.00010 * 23 21 19 27 27 C 1.46846 * 111.00609 * 47.76772 * 13 2 1 28 28 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47108 * 300.00311 * 1 2 3 30 30 H 1.08995 * 109.46864 * 60.00007 * 1 2 3 31 31 H 0.97002 * 119.99775 * 359.97438 * 6 4 2 32 32 H 0.97007 * 119.99849 * 0.02562 * 9 7 6 33 33 H 1.09003 * 115.54829 * 9.41992 * 10 9 7 34 34 H 1.08999 * 117.49729 * 359.97438 * 11 10 9 35 35 H 1.08996 * 117.50398 * 145.02174 * 11 10 9 36 36 H 1.09000 * 117.50155 * 214.98042 * 12 10 9 37 37 H 1.08998 * 117.49874 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.46446 * 305.86302 * 14 13 2 39 39 H 1.09004 * 109.46046 * 65.82764 * 14 13 2 40 40 H 1.08999 * 109.50035 * 60.76197 * 15 14 13 41 41 H 1.08993 * 109.50572 * 180.88355 * 15 14 13 42 42 H 1.09000 * 109.52526 * 297.75072 * 16 15 14 43 43 H 1.09001 * 109.52394 * 177.55376 * 16 15 14 44 44 H 0.97001 * 119.99580 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.45977 * 54.14571 * 27 13 2 46 46 H 1.08998 * 109.45229 * 294.17224 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4957 -1.8270 -1.1390 6 7 1.9665 -0.1045 -2.4325 7 6 2.4153 -0.7401 -3.5330 8 8 2.8798 -1.8595 -3.4414 9 7 2.3489 -0.1344 -4.7352 10 6 2.8372 -0.8250 -5.9313 11 6 3.6816 -0.0168 -6.9186 12 6 2.2460 -0.4071 -7.2792 13 7 2.0197 -0.6925 1.1994 14 6 1.8921 0.1601 2.3883 15 6 2.5423 -0.5337 3.5874 16 6 1.8545 -1.8808 3.8262 17 6 1.9597 -2.7307 2.5568 18 1 3.0088 -2.9287 2.3366 19 6 1.2341 -4.0353 2.7633 20 1 0.4011 -4.2964 2.1274 21 6 1.6300 -4.8930 3.7676 22 7 2.6407 -4.5723 4.5457 23 14 0.7301 -6.5096 4.0239 24 1 0.8279 -7.3316 2.7910 25 1 1.3457 -7.2444 5.1581 26 1 -0.6983 -6.2386 4.3261 27 6 1.3264 -1.9733 1.3876 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.5955 0.7887 -2.5057 32 1 1.9785 0.7592 -4.8083 33 1 3.0894 -1.8769 -5.7968 34 1 3.8734 1.0289 -6.6783 35 1 4.4890 -0.5369 -7.4339 36 1 2.1097 -1.1839 -8.0316 37 1 1.4935 0.3814 -7.2759 38 1 2.3889 1.1131 2.2068 39 1 0.8369 0.3350 2.5982 40 1 3.6007 -0.6965 3.3837 41 1 2.4337 0.0923 4.4730 42 1 0.8046 -1.7160 4.0681 43 1 2.3429 -2.3978 4.6522 44 1 2.9190 -5.1756 5.2525 45 1 1.4124 -2.5697 0.4793 46 1 0.2739 -1.7882 1.6023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:43 Heat of formation + Delta-G solvation = -56.159723 kcal Electronic energy + Delta-G solvation = -26293.098253 eV Core-core repulsion = 22603.806104 eV Total energy + Delta-G solvation = -3689.292148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.33826 -40.55136 -39.17510 -37.89279 -36.03956 -35.70503 -34.06386 -33.52876 -31.66422 -30.44538 -26.98624 -26.66466 -24.96854 -23.33757 -23.24976 -22.94093 -22.08103 -21.42785 -20.25307 -19.77990 -18.43691 -18.15854 -17.23171 -17.06413 -16.85511 -16.35387 -15.94303 -15.68289 -15.45362 -15.36209 -15.19255 -14.84460 -14.63463 -14.33541 -13.92219 -13.67816 -13.40401 -13.26699 -13.03306 -12.82600 -12.72486 -12.57880 -12.52896 -12.41328 -12.35579 -11.95572 -11.78571 -11.62052 -11.46245 -11.37044 -11.24050 -10.99282 -10.77603 -10.40472 -10.35751 -9.80241 -9.07969 -8.09105 -6.23182 1.05130 1.20881 1.36299 1.40085 1.47132 2.16865 2.40954 2.74783 3.00640 3.15180 3.16965 3.66245 3.80142 3.98594 4.06974 4.07763 4.08623 4.28994 4.33725 4.43985 4.62672 4.65924 4.68563 4.71665 4.79131 4.87251 4.91218 5.01056 5.03945 5.10836 5.14037 5.23361 5.23514 5.28835 5.41119 5.43143 5.50868 5.58844 5.62999 5.95605 6.17145 6.22798 6.32911 6.46181 6.61442 6.89396 7.18336 7.34700 7.43807 8.95656 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003200 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.036688 B = 8747.537180 C = 9746.616679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.155 0.845 4 C 0.516 3.484 5 O -0.506 6.506 6 N -0.668 5.668 7 C 0.691 3.309 8 O -0.593 6.593 9 N -0.686 5.686 10 C 0.058 3.942 11 C -0.181 4.181 12 C -0.164 4.164 13 N -0.544 5.544 14 C 0.068 3.932 15 C -0.113 4.113 16 C -0.103 4.103 17 C 0.054 3.946 18 H -0.021 1.021 19 C -0.538 4.538 20 H 0.044 0.956 21 C 0.012 3.988 22 N -0.916 5.916 23 Si 0.955 3.045 24 H -0.279 1.279 25 H -0.279 1.279 26 H -0.265 1.265 27 C 0.086 3.914 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.435 0.565 32 H 0.421 0.579 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.054 0.946 44 H 0.261 0.739 45 H 0.044 0.956 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 21.734 -19.589 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 H 0.172 0.828 4 C 0.303 3.697 5 O -0.375 6.375 6 N -0.337 5.337 7 C 0.391 3.609 8 O -0.469 6.469 9 N -0.342 5.342 10 C -0.049 4.049 11 C -0.220 4.220 12 C -0.203 4.203 13 N -0.269 5.269 14 C -0.058 4.058 15 C -0.151 4.151 16 C -0.141 4.141 17 C 0.035 3.965 18 H -0.003 1.003 19 C -0.577 4.577 20 H 0.063 0.937 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.780 3.220 24 H -0.204 1.204 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.041 4.041 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.275 0.725 32 H 0.259 0.741 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.818 19.873 -19.318 27.977 hybrid contribution -1.138 -0.732 0.373 1.404 sum -4.956 19.141 -18.945 27.384 Atomic orbital electron populations 1.22377 0.92951 1.02574 1.05535 1.21802 0.95831 0.99325 0.86965 0.82792 1.21626 0.77231 0.86213 0.84663 1.90869 1.40498 1.20748 1.85351 1.43871 1.61511 1.22142 1.06165 1.16399 0.78820 0.84108 0.81533 1.91070 1.49869 1.20432 1.85522 1.44317 1.65780 1.20427 1.03692 1.21507 1.05255 0.96934 0.81171 1.23553 0.95156 1.01794 1.01452 1.23518 0.96818 1.04358 0.95567 1.61694 1.57818 1.04294 1.03091 1.22129 0.99586 0.95643 0.88469 1.21606 0.99195 0.96479 0.97780 1.21444 0.97711 0.94772 1.00176 1.18552 0.93665 0.92677 0.91634 1.00263 1.21493 1.15977 1.04691 1.15493 0.93737 1.25744 0.95880 1.01373 0.95632 1.70041 1.27807 1.37746 1.19906 0.85674 0.79201 0.79653 0.77503 1.20430 1.20403 1.18994 1.21964 0.94223 0.89426 0.98513 0.94420 0.89447 0.87810 0.72543 0.74079 0.87589 0.86874 0.87674 0.87155 0.86283 0.87768 0.93657 0.93952 0.90271 0.95196 0.92741 0.93035 0.93764 0.95470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.56 8.30 71.99 0.60 -2.96 16 2 C 0.07 1.82 2.70 44.17 0.12 1.94 16 3 H 0.15 2.24 7.86 -2.39 -0.02 2.23 16 4 C 0.52 16.45 6.91 87.66 0.61 17.05 16 5 O -0.51 -24.26 12.71 19.87 0.25 -24.01 16 6 N -0.67 -14.00 5.24 -440.54 -2.31 -16.31 16 7 C 0.69 18.77 8.50 179.06 1.52 20.29 16 8 O -0.59 -24.97 14.31 18.92 0.27 -24.70 16 9 N -0.69 -10.84 5.57 -457.88 -2.55 -13.39 16 10 C 0.06 0.96 6.43 44.99 0.29 1.25 16 11 C -0.18 -1.84 10.46 30.62 0.32 -1.52 16 12 C -0.16 -1.45 10.46 30.62 0.32 -1.13 16 13 N -0.54 -19.94 4.35 -875.51 -3.81 -23.75 16 14 C 0.07 2.07 5.22 86.32 0.45 2.52 16 15 C -0.11 -4.32 6.09 30.65 0.19 -4.13 16 16 C -0.10 -5.14 5.03 30.68 0.15 -4.98 16 17 C 0.05 3.02 2.26 -11.49 -0.03 2.99 16 18 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 19 C -0.54 -32.91 8.56 25.60 0.22 -32.69 16 20 H 0.04 2.70 7.74 -2.91 -0.02 2.67 16 21 C 0.01 0.73 5.30 84.65 0.45 1.18 16 22 N -0.92 -56.93 11.36 21.45 0.24 -56.68 16 23 Si 0.95 47.12 29.54 68.60 2.03 49.14 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.09 4.04 3.39 86.32 0.29 4.33 16 28 H 0.04 1.05 6.45 -2.39 -0.02 1.04 16 29 H 0.09 1.56 7.09 -2.39 -0.02 1.54 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.43 3.31 8.71 -92.71 -0.81 2.50 16 32 H 0.42 2.55 8.84 -92.70 -0.82 1.73 16 33 H 0.11 2.53 7.40 -2.39 -0.02 2.52 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 2.29 7.95 -2.39 -0.02 2.27 16 39 H 0.05 1.24 7.13 -2.38 -0.02 1.23 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 3.09 6.16 -2.39 -0.01 3.08 16 44 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.04 2.37 5.90 -2.39 -0.01 2.35 16 46 H 0.03 1.21 6.59 -2.39 -0.02 1.20 16 Total: -1.00 -94.28 363.42 -1.00 -95.28 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.62 Total: 10.26 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.50 Total: 4.16 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -8.42 Total: -110.13 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: 0.52 Total: -48.71 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -94.28 -1.00 -95.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.119 kcal (2) G-P(sol) polarization free energy of solvation -94.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds