Wall clock time and date at job start Fri Apr 10 2020 18:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46939 * 2 1 4 4 C 1.50696 * 109.47052 * 119.99436 * 2 1 3 5 5 O 1.21242 * 119.99750 * 120.00008 * 4 2 1 6 6 N 1.34772 * 120.00462 * 300.00546 * 4 2 1 7 7 C 1.34780 * 120.00191 * 179.97438 * 6 4 2 8 8 O 1.21537 * 119.99982 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99953 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99840 * 179.97438 * 9 7 6 11 11 C 1.53000 * 117.49632 * 155.00038 * 10 9 7 12 12 C 1.53002 * 60.02940 * 107.47827 * 11 10 9 13 13 N 1.46901 * 109.47339 * 240.00068 * 2 1 3 14 14 C 1.46852 * 110.99562 * 306.04340 * 13 2 1 15 15 C 1.53039 * 109.52137 * 185.83712 * 14 13 2 16 16 C 1.53117 * 109.27975 * 300.82237 * 15 14 13 17 17 C 1.53127 * 109.16185 * 57.65547 * 16 15 14 18 18 H 1.09001 * 109.50158 * 62.31928 * 17 16 15 19 19 C 1.50694 * 109.50412 * 182.40383 * 17 16 15 20 20 H 1.08005 * 120.00184 * 119.99842 * 19 17 16 21 21 C 1.37876 * 120.00053 * 299.99723 * 19 17 16 22 22 N 1.31518 * 119.99779 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99963 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47335 * 60.00215 * 23 21 19 25 25 H 1.48501 * 109.46754 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47120 * 299.99835 * 23 21 19 27 27 C 1.46848 * 110.99995 * 70.25191 * 13 2 1 28 28 H 1.09008 * 109.47114 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47545 * 300.00460 * 1 2 3 31 31 H 0.97002 * 119.99722 * 359.97438 * 6 4 2 32 32 H 0.97002 * 119.99960 * 359.97438 * 9 7 6 33 33 H 1.08999 * 115.55024 * 9.33258 * 10 9 7 34 34 H 1.09002 * 117.49833 * 214.97932 * 11 10 9 35 35 H 1.09002 * 117.49953 * 359.97438 * 11 10 9 36 36 H 1.09000 * 117.49996 * 107.50493 * 12 11 10 37 37 H 1.08999 * 117.49664 * 252.51862 * 12 11 10 38 38 H 1.08995 * 109.46015 * 305.85582 * 14 13 2 39 39 H 1.09003 * 109.45825 * 65.82855 * 14 13 2 40 40 H 1.09002 * 109.49854 * 60.76273 * 15 14 13 41 41 H 1.08994 * 109.50311 * 180.87969 * 15 14 13 42 42 H 1.09002 * 109.52354 * 177.55374 * 16 15 14 43 43 H 1.08993 * 109.52755 * 297.74992 * 16 15 14 44 44 H 0.97004 * 119.99632 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.46222 * 294.18108 * 27 13 2 46 46 H 1.08998 * 109.45950 * 54.14677 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7293 -1.6960 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1555 -0.8854 3.5551 8 8 2.8536 -1.8741 3.4436 9 7 1.8303 -0.4247 4.7791 10 6 2.3177 -1.1159 5.9753 11 6 2.4424 -0.2979 7.2623 12 6 1.3248 -1.3331 7.1199 13 7 2.0197 -0.6925 -1.1994 14 6 1.4346 -2.0350 -1.3077 15 6 2.0744 -2.7786 -2.4823 16 6 1.8318 -1.9902 -3.7723 17 6 2.4080 -0.5801 -3.6154 18 1 3.4855 -0.6423 -3.4627 19 6 2.1214 0.2217 -4.8588 20 1 1.5372 1.1278 -4.7943 21 6 2.6050 -0.2014 -6.0787 22 7 3.3160 -1.3051 -6.1572 23 14 2.2503 0.7929 -7.6198 24 1 2.8099 2.1598 -7.4667 25 1 2.8763 0.1296 -8.7917 26 1 0.7823 0.8792 -7.8262 27 6 1.7584 0.0997 -2.4080 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.1492 0.5390 2.5435 32 1 1.2735 0.3646 4.8681 33 1 3.0612 -1.8932 5.7990 34 1 3.2677 -0.5374 7.9329 35 1 2.1622 0.7546 7.2189 36 1 1.4148 -2.2535 7.6967 37 1 0.3093 -0.9616 6.9824 38 1 1.6178 -2.5864 -0.3855 39 1 0.3604 -1.9507 -1.4730 40 1 3.1466 -2.8753 -2.3111 41 1 1.6288 -3.7692 -2.5720 42 1 2.3230 -2.4938 -4.6049 43 1 0.7608 -1.9266 -3.9644 44 1 3.6559 -1.6029 -7.0155 45 1 0.6828 0.1739 -2.5681 46 1 2.1769 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:55 Heat of formation + Delta-G solvation = -28.112100 kcal Electronic energy + Delta-G solvation = -26102.504424 eV Core-core repulsion = 22414.428512 eV Total energy + Delta-G solvation = -3688.075912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = -0.43 seconds Orbital eigenvalues (eV) -41.31018 -39.38843 -37.99395 -36.93986 -34.77450 -34.16326 -32.85068 -32.10495 -29.92035 -29.05681 -25.57153 -24.91910 -23.75073 -22.83706 -21.98950 -21.56493 -21.13177 -20.24722 -19.05462 -18.31015 -17.10325 -16.45144 -16.39919 -16.02504 -15.36231 -14.89700 -14.87935 -14.54321 -14.34731 -14.08509 -13.76211 -13.65492 -13.14627 -12.86303 -12.56468 -12.39677 -12.06750 -12.04376 -11.87939 -11.73351 -11.65464 -11.29640 -10.96642 -10.91125 -10.89993 -10.68375 -10.56393 -10.17795 -9.92880 -9.76639 -9.60282 -9.37208 -9.14764 -8.93335 -8.66531 -8.26304 -7.66295 -5.93809 -4.00806 2.08119 2.11512 3.09877 3.33456 3.38795 3.40073 3.55393 3.56869 4.31473 4.34049 4.50604 4.51638 4.54346 4.56999 5.01565 5.09544 5.17040 5.28921 5.35818 5.43996 5.47904 5.61455 5.63158 5.82999 5.88107 5.93937 6.04069 6.12797 6.20218 6.33032 6.39438 6.41988 6.56926 6.79596 6.86663 6.98754 7.28373 7.29030 7.43417 7.66192 7.75298 7.81000 8.10202 8.12359 8.21834 8.23425 8.50079 9.03084 9.63159 11.11928 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.002565 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.492570 B =10914.627578 C =11180.555757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.068 3.932 3 H 0.110 0.890 4 C 0.519 3.481 5 O -0.438 6.438 6 N -0.693 5.693 7 C 0.698 3.302 8 O -0.527 6.527 9 N -0.713 5.713 10 C 0.098 3.902 11 C -0.189 4.189 12 C -0.195 4.195 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.055 3.945 18 H 0.035 0.965 19 C -0.516 4.516 20 H 0.053 0.947 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.279 1.279 27 C 0.069 3.931 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.406 0.594 32 H 0.398 0.602 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.260 0.740 45 H 0.024 0.976 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 4.974 24.093 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 H 0.128 0.872 4 C 0.304 3.696 5 O -0.303 6.303 6 N -0.360 5.360 7 C 0.398 3.602 8 O -0.398 6.398 9 N -0.369 5.369 10 C -0.009 4.009 11 C -0.228 4.228 12 C -0.234 4.234 13 N -0.240 5.240 14 C -0.071 4.071 15 C -0.153 4.153 16 C -0.149 4.149 17 C 0.037 3.963 18 H 0.053 0.947 19 C -0.555 4.555 20 H 0.071 0.929 21 C -0.139 4.139 22 N -0.525 5.525 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.058 4.058 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.232 0.768 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.065 3.215 23.730 24.703 hybrid contribution -1.789 1.627 -0.693 2.516 sum -7.854 4.842 23.037 24.816 Atomic orbital electron populations 1.22456 0.95528 1.03342 1.03075 1.21655 0.93971 0.98990 0.89912 0.87225 1.21072 0.80350 0.85180 0.83047 1.90817 1.31320 1.23000 1.85155 1.44313 1.52834 1.32319 1.06547 1.16095 0.80648 0.83237 0.80230 1.91077 1.38623 1.25059 1.85076 1.44600 1.56062 1.32510 1.03692 1.21493 1.00761 0.99273 0.79374 1.23414 1.01689 0.97664 1.00025 1.23476 0.95880 1.01427 1.02569 1.61950 1.58101 1.02952 1.01001 1.22218 0.95341 0.89518 1.00053 1.21638 1.00768 0.97211 0.95671 1.21664 0.98850 0.98372 0.95972 1.18663 0.96251 0.91716 0.89719 0.94652 1.21077 1.33582 1.08746 0.92048 0.92905 1.24942 0.95029 0.95068 0.98826 1.69893 1.35510 1.22043 1.25034 0.86689 0.78365 0.80310 0.82760 1.20339 1.21352 1.20435 1.22386 0.98056 0.96170 0.89145 0.90399 0.91519 0.92282 0.75897 0.76762 0.84134 0.87707 0.88423 0.87843 0.88473 0.90905 0.95843 0.91923 0.93590 0.89116 0.95240 0.92979 0.95746 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 8.34 37.16 0.31 -1.73 16 2 C 0.07 0.94 2.73 -68.87 -0.19 0.76 16 3 H 0.11 1.30 7.98 -51.93 -0.41 0.89 16 4 C 0.52 7.80 6.77 -10.99 -0.07 7.73 16 5 O -0.44 -8.98 12.75 -18.21 -0.23 -9.21 16 6 N -0.69 -7.34 5.13 -15.78 -0.08 -7.42 16 7 C 0.70 8.77 8.50 -86.91 -0.74 8.03 16 8 O -0.53 -9.61 14.31 -18.47 -0.26 -9.88 16 9 N -0.71 -5.64 5.57 -58.65 -0.33 -5.97 16 10 C 0.10 0.76 6.44 -67.89 -0.44 0.32 16 11 C -0.19 -0.96 10.45 -26.73 -0.28 -1.24 16 12 C -0.19 -1.07 10.46 -26.69 -0.28 -1.35 16 13 N -0.52 -9.70 4.34 -228.08 -0.99 -10.69 16 14 C 0.06 1.07 4.35 -3.83 -0.02 1.06 16 15 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 16 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 17 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 18 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.52 -14.00 8.56 -34.44 -0.29 -14.30 16 20 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.56 11.35 55.43 0.63 -24.93 16 23 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.07 1.41 4.36 -3.83 -0.02 1.39 16 28 H 0.08 0.91 6.82 -51.92 -0.35 0.56 16 29 H 0.07 0.82 6.46 -51.93 -0.34 0.48 16 30 H 0.06 0.43 7.56 -51.93 -0.39 0.03 16 31 H 0.41 2.28 8.13 -40.82 -0.33 1.95 16 32 H 0.40 1.69 8.84 -40.82 -0.36 1.33 16 33 H 0.14 1.38 7.40 -51.93 -0.38 1.00 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 1.43 5.80 -51.93 -0.30 1.13 16 39 H 0.02 0.42 6.58 -51.93 -0.34 0.08 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.49 6.88 -51.93 -0.36 0.13 16 46 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -35.61 361.76 -10.68 -46.29 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.23 Total: 2.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.61 Total: -1.94 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.77 Total: -49.00 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.50 Total: -19.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.61 -10.68 -46.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.179 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.43 seconds