Wall clock time and date at job start Fri Apr 10 2020 18:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46939 * 2 1 4 4 C 1.50696 * 109.47052 * 119.99436 * 2 1 3 5 5 O 1.21242 * 119.99750 * 120.00008 * 4 2 1 6 6 N 1.34772 * 120.00462 * 300.00546 * 4 2 1 7 7 C 1.34780 * 120.00191 * 179.97438 * 6 4 2 8 8 O 1.21537 * 119.99982 * 359.97438 * 7 6 4 9 9 N 1.34777 * 119.99953 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99840 * 179.97438 * 9 7 6 11 11 C 1.53000 * 117.49632 * 155.00038 * 10 9 7 12 12 C 1.53002 * 60.02940 * 107.47827 * 11 10 9 13 13 N 1.46901 * 109.47339 * 240.00068 * 2 1 3 14 14 C 1.46852 * 110.99562 * 306.04340 * 13 2 1 15 15 C 1.53039 * 109.52137 * 185.83712 * 14 13 2 16 16 C 1.53117 * 109.27975 * 300.82237 * 15 14 13 17 17 C 1.53127 * 109.16185 * 57.65547 * 16 15 14 18 18 H 1.09001 * 109.50158 * 62.31928 * 17 16 15 19 19 C 1.50694 * 109.50412 * 182.40383 * 17 16 15 20 20 H 1.08005 * 120.00184 * 119.99842 * 19 17 16 21 21 C 1.37876 * 120.00053 * 299.99723 * 19 17 16 22 22 N 1.31518 * 119.99779 * 0.02562 * 21 19 17 23 23 Si 1.86802 * 119.99963 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47335 * 60.00215 * 23 21 19 25 25 H 1.48501 * 109.46754 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47120 * 299.99835 * 23 21 19 27 27 C 1.46848 * 110.99995 * 70.25191 * 13 2 1 28 28 H 1.09008 * 109.47114 * 60.00203 * 1 2 3 29 29 H 1.09001 * 109.46939 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47545 * 300.00460 * 1 2 3 31 31 H 0.97002 * 119.99722 * 359.97438 * 6 4 2 32 32 H 0.97002 * 119.99960 * 359.97438 * 9 7 6 33 33 H 1.08999 * 115.55024 * 9.33258 * 10 9 7 34 34 H 1.09002 * 117.49833 * 214.97932 * 11 10 9 35 35 H 1.09002 * 117.49953 * 359.97438 * 11 10 9 36 36 H 1.09000 * 117.49996 * 107.50493 * 12 11 10 37 37 H 1.08999 * 117.49664 * 252.51862 * 12 11 10 38 38 H 1.08995 * 109.46015 * 305.85582 * 14 13 2 39 39 H 1.09003 * 109.45825 * 65.82855 * 14 13 2 40 40 H 1.09002 * 109.49854 * 60.76273 * 15 14 13 41 41 H 1.08994 * 109.50311 * 180.87969 * 15 14 13 42 42 H 1.09002 * 109.52354 * 177.55374 * 16 15 14 43 43 H 1.08993 * 109.52755 * 297.74992 * 16 15 14 44 44 H 0.97004 * 119.99632 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.46222 * 294.18108 * 27 13 2 46 46 H 1.08998 * 109.45950 * 54.14677 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7293 -1.6960 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1555 -0.8854 3.5551 8 8 2.8536 -1.8741 3.4436 9 7 1.8303 -0.4247 4.7791 10 6 2.3177 -1.1159 5.9753 11 6 2.4424 -0.2979 7.2623 12 6 1.3248 -1.3331 7.1199 13 7 2.0197 -0.6925 -1.1994 14 6 1.4346 -2.0350 -1.3077 15 6 2.0744 -2.7786 -2.4823 16 6 1.8318 -1.9902 -3.7723 17 6 2.4080 -0.5801 -3.6154 18 1 3.4855 -0.6423 -3.4627 19 6 2.1214 0.2217 -4.8588 20 1 1.5372 1.1278 -4.7943 21 6 2.6050 -0.2014 -6.0787 22 7 3.3160 -1.3051 -6.1572 23 14 2.2503 0.7929 -7.6198 24 1 2.8099 2.1598 -7.4667 25 1 2.8763 0.1296 -8.7917 26 1 0.7823 0.8792 -7.8262 27 6 1.7584 0.0997 -2.4080 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.1492 0.5390 2.5435 32 1 1.2735 0.3646 4.8681 33 1 3.0612 -1.8932 5.7990 34 1 3.2677 -0.5374 7.9329 35 1 2.1622 0.7546 7.2189 36 1 1.4148 -2.2535 7.6967 37 1 0.3093 -0.9616 6.9824 38 1 1.6178 -2.5864 -0.3855 39 1 0.3604 -1.9507 -1.4730 40 1 3.1466 -2.8753 -2.3111 41 1 1.6288 -3.7692 -2.5720 42 1 2.3230 -2.4938 -4.6049 43 1 0.7608 -1.9266 -3.9644 44 1 3.6559 -1.6029 -7.0155 45 1 0.6828 0.1739 -2.5681 46 1 2.1769 1.0986 -2.2849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:03:51 Heat of formation + Delta-G solvation = -54.343783 kcal Electronic energy + Delta-G solvation = -26103.641915 eV Core-core repulsion = 22414.428512 eV Total energy + Delta-G solvation = -3689.213403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.37813 -40.56838 -39.17975 -37.89160 -36.04677 -35.71031 -34.04886 -33.49985 -31.70666 -30.47001 -26.90847 -26.62298 -24.97112 -23.34971 -23.24318 -23.05577 -22.08896 -21.39909 -20.24456 -19.83273 -18.37696 -18.12416 -17.30167 -17.03073 -16.86703 -16.27658 -16.06638 -15.72841 -15.44406 -15.28868 -15.16324 -14.96021 -14.65200 -14.30942 -13.95106 -13.67673 -13.40983 -13.33102 -12.94989 -12.80784 -12.70566 -12.57002 -12.52454 -12.36792 -12.33633 -11.96949 -11.81373 -11.62211 -11.45670 -11.40414 -11.23957 -11.00120 -10.65685 -10.54377 -10.31721 -9.79857 -9.08743 -8.03917 -6.18997 1.01048 1.19160 1.44560 1.46272 1.53656 2.15049 2.45247 2.73546 3.01386 3.09123 3.23113 3.62010 3.80459 3.98500 4.07070 4.08043 4.09018 4.22650 4.29659 4.42054 4.60698 4.64708 4.67141 4.72302 4.79973 4.82461 4.88347 4.99542 5.02435 5.08225 5.14121 5.18490 5.23915 5.25995 5.38527 5.40304 5.51467 5.56428 5.66451 5.96976 6.12822 6.22467 6.25513 6.46827 6.58313 6.94907 7.12123 7.32510 7.49258 9.00795 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.038853 B = 0.002565 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.492570 B =10914.627578 C =11180.555757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.138 0.862 4 C 0.524 3.476 5 O -0.501 6.501 6 N -0.669 5.669 7 C 0.693 3.307 8 O -0.590 6.590 9 N -0.687 5.687 10 C 0.060 3.940 11 C -0.167 4.167 12 C -0.181 4.181 13 N -0.541 5.541 14 C 0.069 3.931 15 C -0.111 4.111 16 C -0.101 4.101 17 C 0.050 3.950 18 H -0.012 1.012 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.008 3.992 22 N -0.920 5.920 23 Si 0.958 3.042 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.086 3.914 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.433 0.567 32 H 0.420 0.580 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.031 0.969 44 H 0.258 0.742 45 H 0.037 0.963 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 7.826 26.131 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.043 4.043 3 H 0.156 0.844 4 C 0.310 3.690 5 O -0.370 6.370 6 N -0.338 5.338 7 C 0.394 3.606 8 O -0.466 6.466 9 N -0.343 5.343 10 C -0.046 4.046 11 C -0.205 4.205 12 C -0.220 4.220 13 N -0.266 5.266 14 C -0.059 4.059 15 C -0.149 4.149 16 C -0.139 4.139 17 C 0.031 3.969 18 H 0.006 0.994 19 C -0.568 4.568 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.560 5.560 23 Si 0.783 3.217 24 H -0.194 1.194 25 H -0.216 1.216 26 H -0.193 1.193 27 C -0.041 4.041 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.273 0.727 32 H 0.258 0.742 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.853 6.168 25.844 28.005 hybrid contribution -0.913 0.750 -1.199 1.684 sum -9.766 6.918 24.644 27.396 Atomic orbital electron populations 1.22420 0.92508 1.03294 1.05436 1.21803 0.96228 0.99261 0.87056 0.84444 1.21316 0.79091 0.84165 0.84411 1.90811 1.34260 1.25829 1.86123 1.43880 1.52328 1.32698 1.04880 1.16334 0.80144 0.82647 0.81499 1.91050 1.41505 1.27996 1.86005 1.44347 1.55172 1.32627 1.02151 1.21530 1.02320 1.00624 0.80154 1.23508 1.01481 0.98426 0.97088 1.23550 0.96367 1.01901 1.00175 1.61717 1.59726 1.02974 1.02148 1.22018 0.95890 0.89674 0.98313 1.21556 0.99542 0.98230 0.95523 1.21454 0.98134 0.98175 0.96115 1.18609 0.93878 0.92647 0.91774 0.99374 1.21488 1.33316 1.09099 0.92945 0.92042 1.25812 0.94920 0.96068 1.02212 1.70075 1.36631 1.23704 1.25539 0.85619 0.78576 0.78874 0.78599 1.19436 1.21585 1.19319 1.22029 0.98092 0.95932 0.88046 0.90429 0.92758 0.87538 0.72690 0.74169 0.87206 0.87113 0.86499 0.87583 0.87025 0.91372 0.94081 0.94589 0.91943 0.92688 0.95066 0.93259 0.94496 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.34 71.98 0.60 -2.62 16 2 C 0.07 1.74 2.73 44.17 0.12 1.86 16 3 H 0.14 2.75 7.98 -2.39 -0.02 2.73 16 4 C 0.52 15.16 6.77 87.66 0.59 15.76 16 5 O -0.50 -21.06 12.75 19.85 0.25 -20.80 16 6 N -0.67 -12.67 5.13 -440.53 -2.26 -14.93 16 7 C 0.69 16.85 8.50 179.05 1.52 18.37 16 8 O -0.59 -22.31 14.31 18.93 0.27 -22.04 16 9 N -0.69 -9.47 5.57 -457.75 -2.55 -12.02 16 10 C 0.06 0.87 6.44 45.01 0.29 1.16 16 11 C -0.17 -1.23 10.45 30.60 0.32 -0.91 16 12 C -0.18 -1.54 10.46 30.62 0.32 -1.22 16 13 N -0.54 -20.05 4.34 -875.51 -3.80 -23.85 16 14 C 0.07 2.62 4.35 86.33 0.38 2.99 16 15 C -0.11 -4.88 6.09 30.65 0.19 -4.69 16 16 C -0.10 -5.05 5.02 30.68 0.15 -4.90 16 17 C 0.05 2.57 2.26 -11.49 -0.03 2.55 16 18 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 19 C -0.53 -29.02 8.56 25.60 0.22 -28.80 16 20 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 21 C 0.01 0.46 5.30 84.65 0.45 0.91 16 22 N -0.92 -55.00 11.35 21.45 0.24 -54.76 16 23 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.09 3.44 4.36 86.33 0.38 3.81 16 28 H 0.08 1.48 6.82 -2.38 -0.02 1.47 16 29 H 0.05 1.15 6.46 -2.39 -0.02 1.14 16 30 H 0.11 0.92 7.56 -2.39 -0.02 0.90 16 31 H 0.43 3.03 8.13 -92.71 -0.75 2.28 16 32 H 0.42 2.00 8.84 -92.71 -0.82 1.18 16 33 H 0.11 2.30 7.40 -2.39 -0.02 2.28 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 2.72 5.80 -2.39 -0.01 2.71 16 39 H 0.04 1.42 6.58 -2.39 -0.02 1.40 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 3.14 6.15 -2.39 -0.01 3.13 16 43 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.04 1.39 6.88 -2.39 -0.02 1.37 16 46 H 0.07 2.63 8.01 -2.39 -0.02 2.61 16 Total: -1.00 -84.27 361.76 -0.88 -85.15 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -0.57 Total: 13.29 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.50 Total: 4.27 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -8.37 Total: -105.56 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: 0.52 Total: -42.85 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -84.27 -0.88 -85.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.809 kcal (2) G-P(sol) polarization free energy of solvation -84.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds