Wall clock time and date at job start Fri Apr 10 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46802 * 2 1 4 4 C 1.46765 * 124.35163 * 90.00068 * 3 2 1 5 5 C 1.54481 * 105.47288 * 196.98858 * 4 3 2 6 6 H 1.09003 * 110.96456 * 92.74687 * 5 4 3 7 7 N 1.46504 * 110.96957 * 216.46359 * 5 4 3 8 8 C 1.34771 * 120.00004 * 205.00116 * 7 5 4 9 9 O 1.21587 * 120.00115 * 5.07569 * 8 7 5 10 10 N 1.34773 * 120.00211 * 185.06852 * 8 7 5 11 11 C 1.46931 * 120.62767 * 354.97272 * 10 8 7 12 12 C 1.53188 * 108.77594 * 126.36497 * 11 10 8 13 13 C 1.53045 * 109.31454 * 54.63212 * 12 11 10 14 14 C 1.53041 * 109.53803 * 298.63403 * 13 12 11 15 15 H 1.08994 * 109.49786 * 301.41645 * 14 13 12 16 16 C 1.50700 * 109.49689 * 181.31419 * 14 13 12 17 17 H 1.08001 * 120.00039 * 0.15712 * 16 14 13 18 18 C 1.37870 * 119.99813 * 180.16436 * 16 14 13 19 19 N 1.31520 * 120.00293 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99890 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46785 * 89.99837 * 20 18 16 22 22 H 1.48501 * 109.46893 * 209.99927 * 20 18 16 23 23 H 1.48495 * 109.46957 * 329.99978 * 20 18 16 24 24 C 1.46925 * 120.63223 * 174.94316 * 10 8 7 25 25 C 1.54630 * 101.76541 * 334.58522 * 5 4 3 26 26 C 1.34416 * 124.34921 * 269.96906 * 3 2 1 27 27 O 1.21286 * 124.94075 * 359.62210 * 26 3 2 28 28 H 1.09003 * 109.47344 * 300.00271 * 1 2 3 29 29 H 1.09004 * 109.47115 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47313 * 240.00094 * 2 1 3 32 32 H 1.09001 * 109.47002 * 119.99505 * 2 1 3 33 33 H 1.09004 * 110.24292 * 77.99221 * 4 3 2 34 34 H 1.08994 * 110.32119 * 316.03156 * 4 3 2 35 35 H 0.97000 * 119.99439 * 25.00179 * 7 5 4 36 36 H 1.08997 * 109.58584 * 6.57691 * 11 10 8 37 37 H 1.09002 * 109.70288 * 246.22115 * 11 10 8 38 38 H 1.08999 * 109.49962 * 174.58613 * 12 11 10 39 39 H 1.09002 * 109.49737 * 294.68011 * 12 11 10 40 40 H 1.09004 * 109.45842 * 58.65658 * 13 12 11 41 41 H 1.09002 * 109.46336 * 178.61077 * 13 12 11 42 42 H 0.96997 * 119.99838 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58475 * 353.41947 * 24 10 8 44 44 H 1.09002 * 109.58391 * 113.70722 * 24 10 8 45 45 H 1.08997 * 110.48042 * 143.47697 * 25 5 4 46 46 H 1.08997 * 110.48197 * 266.11742 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 1.2117 5 6 2.3535 3.6346 0.7485 6 1 1.3789 4.1133 0.8450 7 7 3.3750 4.3772 1.4910 8 6 3.2701 5.7138 1.6283 9 8 2.2826 6.2915 1.2167 10 7 4.2596 6.4100 2.2219 11 6 5.4073 5.7161 2.8221 12 6 6.6973 6.2998 2.2374 13 6 6.7038 7.8168 2.4401 14 6 5.5151 8.4368 1.7020 15 1 5.5772 8.1917 0.6418 16 6 5.5407 9.9336 1.8753 17 1 6.3275 10.3971 2.4519 18 6 4.5595 10.7112 1.2979 19 7 3.6015 10.1469 0.5954 20 14 4.5916 12.5667 1.5121 21 1 5.3772 13.1786 0.4105 22 1 3.2031 13.0926 1.4815 23 1 5.2199 12.9038 2.8147 24 6 4.2116 7.8773 2.2807 25 6 2.7512 3.4818 -0.7379 26 6 2.2716 2.0961 -1.1098 27 8 2.1354 1.6894 -2.2442 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2499 1.8637 1.6431 34 1 1.4941 2.0273 1.9393 35 1 4.1269 3.9067 1.8838 36 1 5.3513 4.6519 2.5934 37 1 5.3988 5.8585 3.9028 38 1 7.5572 5.8615 2.7438 39 1 6.7483 6.0749 1.1721 40 1 6.6279 8.0414 3.5040 41 1 7.6319 8.2318 2.0469 42 1 2.9110 10.6940 0.1896 43 1 3.3668 8.2389 1.6946 44 1 4.1019 8.1981 3.3166 45 1 2.2503 4.2350 -1.3461 46 1 3.8327 3.5549 -0.8528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595642481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:13 Heat of formation + Delta-G solvation = -58.877170 kcal Electronic energy + Delta-G solvation = -26403.885833 eV Core-core repulsion = 22714.475848 eV Total energy + Delta-G solvation = -3689.409986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.79031 -39.59047 -37.18012 -36.44434 -34.84729 -33.49914 -32.34638 -31.60845 -29.80390 -29.08249 -27.59227 -25.09867 -24.57618 -23.53100 -21.97503 -21.72726 -20.30220 -19.56891 -18.88775 -17.66773 -16.94568 -16.74398 -16.21185 -15.82697 -15.07438 -14.84068 -14.55448 -14.18538 -13.98332 -13.90012 -13.77783 -13.74405 -13.48372 -13.40378 -12.75513 -12.63178 -12.47585 -12.30328 -12.25234 -11.98185 -11.78674 -11.48996 -11.26200 -10.99233 -10.92466 -10.51652 -10.43522 -10.24606 -10.04623 -9.90852 -9.54081 -9.12741 -9.00157 -8.98872 -8.90207 -8.42485 -7.71458 -5.99252 -4.08174 2.45545 2.65090 3.08129 3.31732 3.38992 3.40842 3.70577 4.12618 4.29396 4.38861 4.44735 4.70916 4.76640 4.83374 4.93540 5.06348 5.16131 5.21652 5.30914 5.36513 5.40351 5.45005 5.55610 5.56500 5.78941 5.85467 5.88430 5.93962 6.11836 6.28087 6.29065 6.54522 6.62206 6.62580 6.76841 6.87407 6.95906 7.01471 7.29418 7.42723 7.71972 7.90565 8.00912 8.04315 8.39615 8.48736 8.95170 9.14723 9.57586 11.05857 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003119 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.172935 B = 8975.482017 C = 9560.519610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.099 3.901 5 C 0.158 3.842 6 H 0.114 0.886 7 N -0.747 5.747 8 C 0.703 3.297 9 O -0.579 6.579 10 N -0.620 5.620 11 C 0.115 3.885 12 C -0.134 4.134 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.129 3.871 25 C -0.171 4.171 26 C 0.523 3.477 27 O -0.532 6.532 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.393 0.607 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.123 0.877 44 H 0.040 0.960 45 H 0.110 0.890 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -19.795 4.884 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.356 5.356 4 C -0.026 4.026 5 C 0.050 3.950 6 H 0.132 0.868 7 N -0.407 5.407 8 C 0.405 3.595 9 O -0.456 6.456 10 N -0.356 5.356 11 C -0.009 4.009 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.008 3.992 25 C -0.213 4.213 26 C 0.311 3.689 27 O -0.408 6.408 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.058 0.942 45 H 0.128 0.872 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.542 -19.566 3.878 20.006 hybrid contribution 0.461 0.720 0.386 0.938 sum -1.082 -18.846 4.264 19.352 Atomic orbital electron populations 1.22174 0.95703 1.02317 1.02737 1.21339 0.94464 0.81062 1.03092 1.48332 1.66380 1.13896 1.07036 1.22299 1.02198 0.90401 0.87656 1.21444 0.94160 0.90066 0.89295 0.86785 1.45230 1.28109 1.06800 1.60531 1.15898 0.83741 0.80702 0.79204 1.90937 1.30804 1.68502 1.55356 1.47808 1.19981 1.09105 1.58740 1.21504 0.87149 0.94725 0.97519 1.21952 0.95784 0.98648 1.00833 1.21619 1.00547 0.92182 1.00446 1.18987 0.89046 0.94566 0.95364 0.95339 1.21064 1.10843 0.90756 1.33367 0.92389 1.25053 0.95488 0.98625 0.94842 1.69885 1.13315 1.35295 1.33131 0.86602 0.77265 0.85727 0.78456 1.20712 1.21174 1.19942 1.22217 1.04473 0.72259 1.00205 1.22915 1.04408 0.95295 0.98636 1.20947 0.76047 0.87635 0.84258 1.90716 1.53353 1.75536 1.21156 0.92273 0.92087 0.91446 0.89977 0.90350 0.90685 0.89529 0.77015 0.92212 0.92009 0.92326 0.92152 0.93176 0.93051 0.92634 0.85911 0.94186 0.87184 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.12 0.94 6.65 -4.04 -0.03 0.92 16 3 N -0.62 -6.05 2.93 -172.41 -0.51 -6.55 16 4 C 0.10 0.78 7.08 -3.12 -0.02 0.76 16 5 C 0.16 1.81 3.57 -66.29 -0.24 1.57 16 6 H 0.11 1.51 7.48 -51.93 -0.39 1.13 16 7 N -0.75 -9.57 5.06 -57.08 -0.29 -9.86 16 8 C 0.70 13.17 8.29 -86.93 -0.72 12.45 16 9 O -0.58 -13.61 15.39 5.29 0.08 -13.53 16 10 N -0.62 -11.67 2.97 -178.50 -0.53 -12.20 16 11 C 0.12 1.61 6.43 -3.71 -0.02 1.59 16 12 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 13 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 14 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -13.89 8.56 -34.44 -0.29 -14.18 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.37 11.39 55.43 0.63 -24.74 16 20 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.13 3.03 5.39 -3.71 -0.02 3.01 16 25 C -0.17 -2.14 6.59 -26.74 -0.18 -2.32 16 26 C 0.52 6.84 8.02 -10.86 -0.09 6.76 16 27 O -0.53 -8.94 17.59 5.55 0.10 -8.84 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.46 7.80 -51.93 -0.40 0.06 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.39 3.85 5.88 -40.82 -0.24 3.61 16 36 H 0.06 0.62 5.56 -51.93 -0.29 0.33 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 3.42 5.15 -51.93 -0.27 3.15 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -33.68 365.54 -9.31 -42.99 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.46 Total: 3.51 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.83 Total: 7.65 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.69 Total: -53.35 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.18 Total: -22.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.68 -9.31 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.889 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds