Wall clock time and date at job start Fri Apr 10 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46802 * 2 1 4 4 C 1.46765 * 124.35163 * 90.00068 * 3 2 1 5 5 C 1.54481 * 105.47288 * 196.98858 * 4 3 2 6 6 H 1.09003 * 110.96456 * 92.74687 * 5 4 3 7 7 N 1.46504 * 110.96957 * 216.46359 * 5 4 3 8 8 C 1.34771 * 120.00004 * 205.00116 * 7 5 4 9 9 O 1.21587 * 120.00115 * 5.07569 * 8 7 5 10 10 N 1.34773 * 120.00211 * 185.06852 * 8 7 5 11 11 C 1.46931 * 120.62767 * 354.97272 * 10 8 7 12 12 C 1.53188 * 108.77594 * 126.36497 * 11 10 8 13 13 C 1.53045 * 109.31454 * 54.63212 * 12 11 10 14 14 C 1.53041 * 109.53803 * 298.63403 * 13 12 11 15 15 H 1.08994 * 109.49786 * 301.41645 * 14 13 12 16 16 C 1.50700 * 109.49689 * 181.31419 * 14 13 12 17 17 H 1.08001 * 120.00039 * 0.15712 * 16 14 13 18 18 C 1.37870 * 119.99813 * 180.16436 * 16 14 13 19 19 N 1.31520 * 120.00293 * 359.97438 * 18 16 14 20 20 Si 1.86809 * 119.99890 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46785 * 89.99837 * 20 18 16 22 22 H 1.48501 * 109.46893 * 209.99927 * 20 18 16 23 23 H 1.48495 * 109.46957 * 329.99978 * 20 18 16 24 24 C 1.46925 * 120.63223 * 174.94316 * 10 8 7 25 25 C 1.54630 * 101.76541 * 334.58522 * 5 4 3 26 26 C 1.34416 * 124.34921 * 269.96906 * 3 2 1 27 27 O 1.21286 * 124.94075 * 359.62210 * 26 3 2 28 28 H 1.09003 * 109.47344 * 300.00271 * 1 2 3 29 29 H 1.09004 * 109.47115 * 59.99979 * 1 2 3 30 30 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47313 * 240.00094 * 2 1 3 32 32 H 1.09001 * 109.47002 * 119.99505 * 2 1 3 33 33 H 1.09004 * 110.24292 * 77.99221 * 4 3 2 34 34 H 1.08994 * 110.32119 * 316.03156 * 4 3 2 35 35 H 0.97000 * 119.99439 * 25.00179 * 7 5 4 36 36 H 1.08997 * 109.58584 * 6.57691 * 11 10 8 37 37 H 1.09002 * 109.70288 * 246.22115 * 11 10 8 38 38 H 1.08999 * 109.49962 * 174.58613 * 12 11 10 39 39 H 1.09002 * 109.49737 * 294.68011 * 12 11 10 40 40 H 1.09004 * 109.45842 * 58.65658 * 13 12 11 41 41 H 1.09002 * 109.46336 * 178.61077 * 13 12 11 42 42 H 0.96997 * 119.99838 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.58475 * 353.41947 * 24 10 8 44 44 H 1.09002 * 109.58391 * 113.70722 * 24 10 8 45 45 H 1.08997 * 110.48042 * 143.47697 * 25 5 4 46 46 H 1.08997 * 110.48197 * 266.11742 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1621 1.2117 5 6 2.3535 3.6346 0.7485 6 1 1.3789 4.1133 0.8450 7 7 3.3750 4.3772 1.4910 8 6 3.2701 5.7138 1.6283 9 8 2.2826 6.2915 1.2167 10 7 4.2596 6.4100 2.2219 11 6 5.4073 5.7161 2.8221 12 6 6.6973 6.2998 2.2374 13 6 6.7038 7.8168 2.4401 14 6 5.5151 8.4368 1.7020 15 1 5.5772 8.1917 0.6418 16 6 5.5407 9.9336 1.8753 17 1 6.3275 10.3971 2.4519 18 6 4.5595 10.7112 1.2979 19 7 3.6015 10.1469 0.5954 20 14 4.5916 12.5667 1.5121 21 1 5.3772 13.1786 0.4105 22 1 3.2031 13.0926 1.4815 23 1 5.2199 12.9038 2.8147 24 6 4.2116 7.8773 2.2807 25 6 2.7512 3.4818 -0.7379 26 6 2.2716 2.0961 -1.1098 27 8 2.1354 1.6894 -2.2442 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.2499 1.8637 1.6431 34 1 1.4941 2.0273 1.9393 35 1 4.1269 3.9067 1.8838 36 1 5.3513 4.6519 2.5934 37 1 5.3988 5.8585 3.9028 38 1 7.5572 5.8615 2.7438 39 1 6.7483 6.0749 1.1721 40 1 6.6279 8.0414 3.5040 41 1 7.6319 8.2318 2.0469 42 1 2.9110 10.6940 0.1896 43 1 3.3668 8.2389 1.6946 44 1 4.1019 8.1981 3.3166 45 1 2.2503 4.2350 -1.3461 46 1 3.8327 3.5549 -0.8528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595642481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:04:13 Heat of formation + Delta-G solvation = -82.187137 kcal Electronic energy + Delta-G solvation = -26404.896629 eV Core-core repulsion = 22714.475848 eV Total energy + Delta-G solvation = -3690.420782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84324 -40.94452 -38.59084 -37.65192 -35.93511 -35.24626 -33.72870 -32.90739 -31.44244 -30.01712 -28.52676 -26.98221 -25.99502 -24.29928 -23.44344 -22.86246 -21.70447 -20.69657 -20.20919 -19.09073 -18.23588 -17.85601 -17.75651 -16.83093 -16.62658 -16.23487 -16.18544 -15.29019 -15.15338 -15.14887 -14.99833 -14.69756 -14.61002 -14.42689 -14.27682 -14.19931 -13.76715 -13.52152 -13.28851 -12.92107 -12.87317 -12.79320 -12.67315 -12.36615 -12.23724 -12.18710 -11.99388 -11.80031 -11.59926 -11.23301 -11.11577 -10.92143 -10.80317 -10.48744 -10.17635 -9.80539 -9.24752 -8.08327 -6.25006 1.41273 1.42696 1.42782 1.53183 1.63295 2.00089 2.27534 2.43431 2.96772 3.21056 3.34055 3.49878 3.77370 3.97003 4.10618 4.15932 4.21496 4.25894 4.32697 4.50893 4.51647 4.58345 4.66110 4.73864 4.79045 4.83380 4.84377 4.85253 4.93138 4.96613 5.15496 5.29041 5.30517 5.32266 5.36958 5.50352 5.55304 5.59186 5.68020 5.93386 5.98727 6.00580 6.19371 6.39195 6.88307 7.03478 7.15532 7.44950 7.70123 8.94583 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003119 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.172935 B = 8975.482017 C = 9560.519610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.610 5.610 4 C 0.109 3.891 5 C 0.157 3.843 6 H 0.092 0.908 7 N -0.718 5.718 8 C 0.698 3.302 9 O -0.637 6.637 10 N -0.625 5.625 11 C 0.110 3.890 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.015 1.015 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.010 3.990 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 C 0.144 3.856 25 C -0.170 4.170 26 C 0.520 3.480 27 O -0.578 6.578 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.258 0.742 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.082 0.918 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -22.406 7.716 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.344 5.344 4 C -0.014 4.014 5 C 0.050 3.950 6 H 0.110 0.890 7 N -0.378 5.378 8 C 0.399 3.601 9 O -0.518 6.518 10 N -0.361 5.361 11 C -0.012 4.012 12 C -0.165 4.165 13 C -0.144 4.144 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.190 4.190 19 N -0.552 5.552 20 Si 0.780 3.220 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C 0.021 3.979 25 C -0.212 4.212 26 C 0.308 3.692 27 O -0.458 6.458 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.254 0.746 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.231 -22.254 6.780 23.265 hybrid contribution -0.066 1.501 -0.489 1.580 sum 0.165 -20.753 6.290 21.686 Atomic orbital electron populations 1.22154 0.95476 1.03355 1.01638 1.21597 0.94622 0.79720 1.04423 1.48428 1.64793 1.14625 1.06534 1.22421 1.05223 0.86782 0.86938 1.21453 0.92631 0.92330 0.88574 0.88976 1.44840 1.28873 1.04538 1.59596 1.16119 0.82942 0.82300 0.78702 1.90905 1.33194 1.70171 1.57489 1.47667 1.21674 1.07548 1.59194 1.21894 0.84455 0.96634 0.98264 1.21914 0.98109 0.95449 1.00996 1.21513 0.97724 0.95268 0.99864 1.18918 0.91781 0.93902 0.93541 0.99669 1.21529 1.10484 0.92637 1.32696 0.92039 1.25876 0.95232 1.03126 0.94732 1.70089 1.14064 1.36631 1.34456 0.85602 0.77037 0.80427 0.78887 1.20303 1.21457 1.18546 1.21550 1.02228 0.75557 0.98533 1.22835 1.04456 0.94777 0.99140 1.20932 0.75988 0.87875 0.84405 1.90687 1.55678 1.76358 1.23109 0.91418 0.95069 0.89416 0.91190 0.86431 0.87033 0.86826 0.74580 0.87553 0.90031 0.87779 0.93182 0.92401 0.93300 0.93251 0.90795 0.94760 0.89951 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 71.98 0.74 -1.38 16 2 C 0.12 1.47 6.65 86.38 0.57 2.04 16 3 N -0.61 -10.41 2.93 -817.98 -2.40 -12.80 16 4 C 0.11 1.29 7.08 86.83 0.61 1.90 16 5 C 0.16 3.40 3.57 46.05 0.16 3.57 16 6 H 0.09 2.48 7.48 -2.39 -0.02 2.46 16 7 N -0.72 -16.81 5.06 -452.76 -2.29 -19.11 16 8 C 0.70 26.13 8.29 179.06 1.49 27.62 16 9 O -0.64 -31.44 15.39 -3.99 -0.06 -31.50 16 10 N -0.63 -23.17 2.97 -836.90 -2.49 -25.66 16 11 C 0.11 2.64 6.43 86.36 0.56 3.20 16 12 C -0.13 -3.34 6.08 30.67 0.19 -3.15 16 13 C -0.11 -3.89 5.11 30.62 0.16 -3.74 16 14 C 0.04 1.87 2.25 -11.46 -0.03 1.85 16 15 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 16 C -0.53 -29.17 8.56 25.60 0.22 -28.95 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.01 0.55 5.30 84.65 0.45 1.00 16 19 N -0.91 -55.62 11.39 21.45 0.24 -55.37 16 20 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 C 0.14 7.01 5.39 86.37 0.47 7.47 16 25 C -0.17 -4.33 6.59 30.59 0.20 -4.13 16 26 C 0.52 13.53 8.02 87.90 0.71 14.23 16 27 O -0.58 -20.10 17.59 -3.05 -0.05 -20.16 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.09 7.92 -2.39 -0.02 1.07 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.65 7.80 -2.38 -0.02 0.63 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.41 6.16 5.88 -92.71 -0.55 5.62 16 36 H 0.11 1.57 5.56 -2.39 -0.01 1.56 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 43 H 0.07 4.38 5.15 -2.39 -0.01 4.37 16 44 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.11 2.73 8.08 -2.39 -0.02 2.71 16 Total: -1.00 -82.32 365.54 1.89 -80.42 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.43 Total: 16.36 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 6.49 Total: 21.53 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -6.93 Total: -112.94 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.12 Total: -51.66 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -82.32 1.89 -80.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.765 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds