Wall clock time and date at job start Fri Apr 10 2020 18:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47204 * 2 1 4 4 C 1.35044 * 124.18676 * 89.99625 * 3 2 1 5 5 O 1.21231 * 127.19613 * 356.97843 * 4 3 2 6 6 C 1.51160 * 105.61480 * 176.97618 * 4 3 2 7 7 H 1.09007 * 111.62818 * 247.95513 * 6 4 3 8 8 C 1.53200 * 111.05345 * 122.78672 * 6 4 3 9 9 N 1.47794 * 108.22105 * 196.94191 * 8 6 4 10 10 C 1.46891 * 110.75338 * 189.15359 * 9 8 6 11 11 C 1.53003 * 109.47384 * 49.53730 * 10 9 8 12 12 H 1.09000 * 109.46933 * 301.37034 * 11 10 9 13 13 C 1.52998 * 109.47458 * 181.36357 * 11 10 9 14 14 C 1.53006 * 109.46627 * 61.36529 * 11 10 9 15 15 C 1.50705 * 109.46591 * 185.00167 * 14 11 10 16 16 H 1.07993 * 120.00301 * 0.02562 * 15 14 11 17 17 C 1.37874 * 119.99637 * 179.97438 * 15 14 11 18 18 N 1.31523 * 120.00011 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00397 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47305 * 89.99314 * 19 17 15 21 21 H 1.48502 * 109.47214 * 209.99883 * 19 17 15 22 22 H 1.48504 * 109.46921 * 329.99925 * 19 17 15 23 23 C 1.46735 * 113.38699 * 63.59859 * 9 8 6 24 24 C 1.53773 * 109.77947 * 296.61262 * 23 9 8 25 25 N 1.46565 * 106.94229 * 50.06053 * 24 23 9 26 26 C 1.33354 * 130.24212 * 128.06814 * 25 24 23 27 27 O 1.21533 * 124.05102 * 12.49207 * 26 25 24 28 28 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47259 * 300.00057 * 1 2 3 30 30 H 1.08997 * 109.46910 * 60.00322 * 1 2 3 31 31 H 1.08997 * 109.47280 * 239.99368 * 2 1 3 32 32 H 1.09007 * 109.47184 * 119.99166 * 2 1 3 33 33 H 1.08997 * 109.61942 * 314.64415 * 8 6 4 34 34 H 1.09008 * 109.61652 * 75.18250 * 8 6 4 35 35 H 1.09004 * 109.46951 * 169.53876 * 10 9 8 36 36 H 1.09005 * 109.47393 * 289.53840 * 10 9 8 37 37 H 1.09004 * 109.47004 * 54.56065 * 13 11 10 38 38 H 1.08997 * 109.47333 * 174.56012 * 13 11 10 39 39 H 1.09003 * 109.47196 * 294.56472 * 13 11 10 40 40 H 1.08992 * 109.47124 * 304.99856 * 14 11 10 41 41 H 1.08999 * 109.47195 * 65.00272 * 14 11 10 42 42 H 0.97001 * 119.99960 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.41457 * 176.52200 * 23 9 8 44 44 H 1.08996 * 109.41733 * 56.71035 * 23 9 8 45 45 H 1.09003 * 109.95638 * 290.70164 * 24 23 9 46 46 H 1.08999 * 109.95745 * 169.41685 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2712 2.0966 1.1171 5 8 2.0945 1.7498 2.2652 6 6 2.8207 3.4203 0.6368 7 1 3.8727 3.5370 0.8975 8 6 1.9785 4.5882 1.1600 9 7 2.2945 5.7844 0.3515 10 6 1.6850 6.9852 0.9384 11 6 2.0164 7.0480 2.4308 12 1 1.6448 6.1496 2.9236 13 6 1.3533 8.2804 3.0491 14 6 3.5328 7.1394 2.6129 15 6 3.8669 7.0775 4.0812 16 1 3.0769 6.9821 4.8112 17 6 5.1814 7.1416 4.4923 18 7 5.4730 7.0881 5.7736 19 14 6.5481 7.3059 3.2295 20 1 6.8170 8.7440 2.9753 21 1 7.7795 6.6556 3.7454 22 1 6.1342 6.6485 1.9638 23 6 1.9272 5.6456 -1.0623 24 6 2.7479 4.5149 -1.7046 25 7 2.6238 3.3464 -0.8285 26 6 2.2701 2.0919 -1.1105 27 8 2.1865 1.6455 -2.2378 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 0.9199 4.3624 1.0317 34 1 2.1952 4.7516 2.2157 35 1 2.0779 7.8721 0.4413 36 1 0.6035 6.9446 0.8078 37 1 0.2846 8.2637 2.8354 38 1 1.5082 8.2735 4.1280 39 1 1.7947 9.1821 2.6244 40 1 4.0116 6.3078 2.0960 41 1 3.8926 8.0808 2.1978 42 1 6.3979 7.1328 6.0628 43 1 2.1301 6.5815 -1.5830 44 1 0.8654 5.4117 -1.1395 45 1 3.7937 4.8122 -1.7824 46 1 2.3514 4.2826 -2.6930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602487780.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:05:51 Heat of formation + Delta-G solvation = -28.352319 kcal Electronic energy + Delta-G solvation = -27258.604198 eV Core-core repulsion = 23570.517869 eV Total energy + Delta-G solvation = -3688.086329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -42.60788 -38.78694 -38.64179 -36.26101 -35.83731 -34.07196 -32.42617 -31.79122 -30.62412 -28.33636 -27.45469 -25.37670 -24.94479 -23.45836 -22.84259 -22.15947 -20.90358 -19.96442 -18.88441 -17.53410 -17.23529 -16.78170 -16.53076 -16.05263 -15.47688 -15.24274 -14.97883 -14.83828 -14.45462 -14.22915 -14.01456 -13.79703 -13.71277 -13.37672 -12.90793 -12.69438 -12.45230 -12.28259 -12.23342 -11.85792 -11.72775 -11.57471 -11.51230 -11.41936 -11.06904 -10.88205 -10.85392 -10.42714 -10.16363 -9.94820 -9.76714 -9.69518 -9.48372 -9.14782 -8.98007 -8.47770 -8.17654 -5.98180 -3.94895 1.56416 1.93994 2.84470 2.86608 3.34784 3.42933 3.47816 3.65379 4.15400 4.39126 4.51023 4.66471 4.71310 4.84378 4.88841 4.99063 4.99786 5.08002 5.23536 5.34962 5.37320 5.41845 5.47961 5.54373 5.57126 5.63007 5.70504 5.80383 5.84142 5.85652 5.89687 6.11104 6.20686 6.30362 6.36977 6.73447 6.85320 7.00809 7.01068 7.04249 7.17659 7.29081 7.41794 7.55240 7.87603 7.97921 8.60178 9.07600 9.65376 11.15319 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.004372 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.766480 B = 6403.357525 C = 6792.889398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.583 5.583 4 C 0.526 3.474 5 O -0.457 6.457 6 C 0.091 3.909 7 H 0.143 0.857 8 C 0.064 3.936 9 N -0.540 5.540 10 C 0.066 3.934 11 C -0.085 4.085 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.001 4.001 15 C -0.516 4.516 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.876 3.124 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.261 1.261 23 C 0.043 3.957 24 C 0.156 3.844 25 N -0.619 5.619 26 C 0.707 3.293 27 O -0.552 6.552 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.029 0.971 41 H 0.008 0.992 42 H 0.261 0.739 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.087 0.913 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -8.296 -15.333 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.330 5.330 4 C 0.313 3.687 5 O -0.325 6.325 6 C -0.016 4.016 7 H 0.160 0.840 8 C -0.064 4.064 9 N -0.264 5.264 10 C -0.060 4.060 11 C -0.104 4.104 12 H 0.083 0.917 13 C -0.190 4.190 14 C -0.039 4.039 15 C -0.554 4.554 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.186 1.186 23 C -0.086 4.086 24 C 0.035 3.965 25 N -0.357 5.357 26 C 0.409 3.591 27 O -0.427 6.427 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.105 0.895 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.711 -8.660 -15.305 19.625 hybrid contribution 0.044 0.018 -0.532 0.535 sum -8.667 -8.642 -15.837 20.016 Atomic orbital electron populations 1.22125 0.94649 1.03074 1.02785 1.21613 0.95330 0.78974 1.04587 1.46700 1.62303 1.15991 1.08042 1.20820 0.76351 0.86784 0.84785 1.90831 1.49087 1.74847 1.17720 1.22564 1.04109 0.94023 0.80909 0.84005 1.22474 0.95720 0.87553 1.00684 1.61226 1.61430 1.03000 1.00772 1.22278 0.95248 0.91227 0.97281 1.21239 0.99716 0.98280 0.91114 0.91692 1.21677 0.97297 0.97580 1.02442 1.19554 0.90311 0.96718 0.97274 1.21205 0.93284 1.49802 0.91085 0.91137 1.25006 0.98736 0.94815 0.94887 1.69924 1.18815 1.51519 1.14323 0.86837 0.81715 0.78425 0.82694 1.20627 1.21770 1.18565 1.22550 0.97227 0.99040 0.89792 1.21730 1.01742 0.80931 0.92117 1.47628 1.70782 1.08643 1.08618 1.15553 0.77935 0.81436 0.84145 1.90948 1.58312 1.73254 1.20142 0.90561 0.91983 0.92051 0.88672 0.88825 0.94512 0.85714 0.90624 0.95759 0.95014 0.91367 0.93390 0.95246 0.97395 0.92934 0.88755 0.94601 0.89516 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.12 1.15 6.45 -4.04 -0.03 1.12 16 3 N -0.58 -7.29 2.62 -121.04 -0.32 -7.61 16 4 C 0.53 7.27 7.64 -10.64 -0.08 7.19 16 5 O -0.46 -7.44 17.79 5.60 0.10 -7.34 16 6 C 0.09 1.21 4.03 -67.91 -0.27 0.94 16 7 H 0.14 1.89 8.14 -51.93 -0.42 1.47 16 8 C 0.06 0.89 4.47 -3.23 -0.01 0.88 16 9 N -0.54 -7.29 3.86 -233.37 -0.90 -8.19 16 10 C 0.07 0.94 4.57 -3.83 -0.02 0.92 16 11 C -0.08 -1.50 1.84 -90.62 -0.17 -1.67 16 12 H 0.06 1.19 6.00 -51.93 -0.31 0.88 16 13 C -0.13 -2.25 8.91 37.16 0.33 -1.92 16 14 C 0.00 -0.03 3.28 -27.88 -0.09 -0.12 16 15 C -0.52 -13.94 9.03 -34.44 -0.31 -14.25 16 16 H 0.07 2.06 7.31 -52.49 -0.38 1.68 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 C 0.04 0.44 5.69 -3.51 -0.02 0.42 16 24 C 0.16 1.59 7.20 -3.60 -0.03 1.57 16 25 N -0.62 -7.67 3.07 -171.67 -0.53 -8.19 16 26 C 0.71 9.59 8.35 -88.67 -0.74 8.85 16 27 O -0.55 -8.70 17.35 5.34 0.09 -8.61 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.88 7.84 -51.93 -0.41 0.47 16 32 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.13 2.02 5.59 -51.92 -0.29 1.73 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.32 7.12 -51.93 -0.37 0.95 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.66 6.32 -51.93 -0.33 0.33 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.87 8.07 -51.93 -0.42 0.46 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -32.62 363.76 -8.67 -41.29 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.55 Total: -1.29 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.15 Total: 4.61 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.97 Total: -50.84 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.19 Total: -15.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.62 -8.67 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602487780.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.942 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds