Wall clock time and date at job start Fri Apr 10 2020 18:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21282 * 120.00108 * 2 1 4 4 N 1.34771 * 120.00076 * 180.02562 * 2 1 3 5 5 C 1.47028 * 125.64883 * 0.03458 * 4 2 1 6 6 C 1.54367 * 107.28744 * 181.06129 * 5 4 2 7 7 C 1.55153 * 102.92440 * 22.13774 * 6 5 4 8 8 H 1.08999 * 111.00321 * 82.64320 * 7 6 5 9 9 C 1.50698 * 111.00544 * 206.45527 * 7 6 5 10 10 O 1.21280 * 119.99835 * 356.81503 * 9 7 6 11 11 N 1.34774 * 119.99731 * 176.82437 * 9 7 6 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.78108 * 36.78466 * 12 11 9 14 14 C 1.54320 * 110.72204 * 273.54314 * 12 11 9 15 15 N 1.47026 * 107.40273 * 219.52095 * 14 12 11 16 16 C 1.36936 * 125.64687 * 178.82120 * 15 14 12 17 17 H 1.08003 * 119.99609 * 174.91637 * 16 15 14 18 18 C 1.38809 * 120.00139 * 354.92806 * 16 15 14 19 19 N 1.31620 * 120.00245 * 7.07121 * 18 16 15 20 20 Si 1.86804 * 119.99872 * 187.07024 * 18 16 15 21 21 H 1.48495 * 109.46955 * 94.98548 * 20 18 16 22 22 H 1.48503 * 109.46745 * 214.98676 * 20 18 16 23 23 H 1.48498 * 109.46999 * 334.98274 * 20 18 16 24 24 C 1.47419 * 108.69996 * 358.86516 * 15 14 12 25 25 C 1.54903 * 104.83704 * 24.12919 * 24 15 14 26 26 H 1.08994 * 111.00866 * 81.06515 * 25 24 15 27 27 C 1.53000 * 111.00498 * 204.87874 * 25 24 15 28 28 C 1.47425 * 125.65158 * 180.02562 * 4 2 1 29 29 H 1.08991 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46475 * 300.00028 * 1 2 3 31 31 H 1.08993 * 109.47152 * 59.99812 * 1 2 3 32 32 H 1.08996 * 109.88151 * 300.44385 * 5 4 2 33 33 H 1.08997 * 109.88135 * 61.45429 * 5 4 2 34 34 H 1.09006 * 110.70250 * 263.79405 * 6 5 4 35 35 H 1.09000 * 110.75552 * 140.50926 * 6 5 4 36 36 H 0.97001 * 120.00421 * 359.97438 * 11 9 7 37 37 H 1.08994 * 109.88209 * 100.02636 * 14 12 11 38 38 H 1.09004 * 109.88353 * 339.01664 * 14 12 11 39 39 H 0.96994 * 119.99994 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.36581 * 142.96535 * 24 15 14 41 41 H 1.09003 * 110.36822 * 265.28568 * 24 15 14 42 42 H 1.09004 * 109.47055 * 58.54227 * 27 25 24 43 43 H 1.09002 * 109.47328 * 178.53904 * 27 25 24 44 44 H 1.08993 * 109.47237 * 298.54288 * 27 25 24 45 45 H 1.09000 * 110.36823 * 37.05730 * 28 4 2 46 46 H 1.09001 * 110.45580 * 274.78846 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5747 -2.5066 -0.0018 6 6 2.7281 -3.5322 0.0253 7 6 3.9081 -2.7119 0.6101 8 1 3.8592 -2.6786 1.6985 9 6 5.2317 -3.2652 0.1486 10 8 5.2651 -4.2648 -0.5374 11 7 6.3783 -2.6492 0.4983 12 6 7.6651 -3.1874 0.0501 13 1 7.5855 -3.5892 -0.9600 14 6 8.1763 -4.2661 1.0281 15 7 9.6290 -4.0842 1.1632 16 6 10.4558 -4.8293 1.9610 17 1 11.5237 -4.6708 1.9291 18 6 9.9215 -5.7884 2.8103 19 7 8.6394 -6.0800 2.7501 20 14 11.0222 -6.6655 4.0387 21 1 10.9492 -5.9737 5.3506 22 1 10.5686 -8.0710 4.1942 23 1 12.4235 -6.6490 3.5476 24 6 10.0478 -2.9662 0.2984 25 6 8.7745 -2.1016 0.1233 26 1 8.6238 -1.4493 0.9834 27 6 8.8364 -1.2902 -1.1723 28 6 3.6480 -1.3123 -0.0001 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.9483 -2.6308 0.8814 33 1 0.9761 -2.6417 -0.9027 34 1 2.9605 -3.8776 -0.9822 35 1 2.4829 -4.3722 0.6751 36 1 6.3516 -1.8496 1.0468 37 1 7.9623 -5.2581 0.6307 38 1 7.6956 -4.1442 1.9988 39 1 8.2661 -6.7499 3.3439 40 1 10.8357 -2.3878 0.7810 41 1 10.3881 -3.3403 -0.6672 42 1 8.9441 -1.9669 -2.0200 43 1 7.9190 -0.7121 -1.2832 44 1 9.6902 -0.6136 -1.1369 45 1 4.1056 -0.5386 0.6164 46 1 4.0359 -1.2643 -1.0176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080856271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:34 Heat of formation + Delta-G solvation = -72.790138 kcal Electronic energy + Delta-G solvation = -26239.261160 eV Core-core repulsion = 22549.247863 eV Total energy + Delta-G solvation = -3690.013297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56430 -40.57695 -39.28220 -37.99258 -35.64289 -34.33233 -33.20531 -32.18261 -30.78031 -30.23453 -29.02702 -27.37219 -25.62438 -24.80282 -23.37446 -21.97493 -21.56048 -20.72430 -20.28201 -18.90264 -18.47682 -18.06635 -17.39925 -17.04603 -16.76768 -16.48747 -15.86272 -15.64712 -15.46116 -14.95820 -14.67943 -14.47441 -14.38635 -14.09862 -13.94802 -13.76133 -13.61115 -13.37419 -13.31709 -13.08260 -12.94493 -12.87022 -12.62269 -12.54600 -12.35343 -12.16510 -12.03074 -11.88276 -11.85716 -11.66310 -11.46070 -11.09489 -10.83286 -10.73192 -10.01958 -9.74837 -8.93189 -7.86798 -5.23584 1.44101 1.46185 1.53629 1.55367 1.59621 1.89590 2.25560 2.48796 3.26691 3.30941 3.42541 3.59347 3.72373 3.83245 3.88737 4.04070 4.09707 4.16872 4.21787 4.27118 4.49595 4.50696 4.56388 4.60419 4.65641 4.70835 4.75617 4.81255 4.86884 4.99445 5.04446 5.05873 5.09015 5.12467 5.21147 5.25627 5.29394 5.43127 5.48409 5.61587 5.78178 6.15977 6.47282 6.56535 7.05587 7.08995 7.26222 7.74458 8.38723 9.22798 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.003171 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.714481 B = 8826.726918 C = 9628.445575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.519 3.481 3 O -0.600 6.600 4 N -0.619 5.619 5 C 0.103 3.897 6 C -0.112 4.112 7 C -0.115 4.115 8 H 0.127 0.873 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.701 5.701 12 C 0.137 3.863 13 H 0.073 0.927 14 C 0.188 3.812 15 N -0.629 5.629 16 C -0.244 4.244 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.266 1.266 24 C 0.132 3.868 25 C -0.094 4.094 26 H 0.090 0.910 27 C -0.129 4.129 28 C 0.121 3.879 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.412 0.588 37 H -0.012 1.012 38 H 0.020 0.980 39 H 0.245 0.755 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.875 12.111 -5.675 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.311 3.689 3 O -0.482 6.482 4 N -0.354 5.354 5 C -0.018 4.018 6 C -0.150 4.150 7 C -0.137 4.137 8 H 0.145 0.855 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.352 5.352 12 C 0.030 3.970 13 H 0.091 0.909 14 C 0.062 3.938 15 N -0.355 5.355 16 C -0.372 4.372 17 H 0.104 0.896 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.211 1.211 22 H -0.224 1.224 23 H -0.190 1.190 24 C 0.007 3.993 25 C -0.114 4.114 26 H 0.108 0.892 27 C -0.187 4.187 28 C -0.003 4.003 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.249 0.751 37 H 0.006 0.994 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.590 11.862 -6.039 21.270 hybrid contribution 0.872 -0.841 1.008 1.577 sum -15.718 11.021 -5.031 19.845 Atomic orbital electron populations 1.21913 0.87473 1.06472 1.06162 1.21394 0.92156 0.81136 0.74258 1.90714 1.72088 1.32487 1.52908 1.48714 1.06773 1.07090 1.72772 1.22327 0.95847 0.79051 1.04596 1.22566 0.91879 0.97736 1.02861 1.22481 0.91612 0.96227 1.03366 0.85548 1.20761 0.86180 0.83161 0.79120 1.90704 1.88000 1.26756 1.40142 1.45822 1.04953 1.30528 1.53906 1.22082 0.82843 0.94856 0.97179 0.90851 1.21117 0.83923 0.93594 0.95171 1.44749 1.04070 1.36369 1.50340 1.19498 0.90166 1.13542 1.14039 0.89560 1.25732 0.97633 1.00819 1.01903 1.70245 1.12863 1.35799 1.40942 0.85039 0.78260 0.76893 0.79030 1.21136 1.22442 1.19034 1.21850 0.96006 0.88157 0.93311 1.22570 0.93220 0.95200 1.00405 0.89153 1.21649 1.03007 0.99411 0.94588 1.21973 0.82268 0.95059 1.00987 0.87774 0.87676 0.87792 0.88057 0.88580 0.90636 0.88310 0.75138 0.99380 0.96208 0.94588 0.92705 0.95720 0.93019 0.91287 0.90534 0.89738 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.22 71.24 0.73 -0.74 16 2 C 0.52 10.14 7.96 87.66 0.70 10.83 16 3 O -0.60 -17.74 17.36 -3.04 -0.05 -17.79 16 4 N -0.62 -10.77 3.33 -811.75 -2.70 -13.47 16 5 C 0.10 1.17 5.81 86.74 0.50 1.68 16 6 C -0.11 -1.99 6.06 31.80 0.19 -1.79 16 7 C -0.11 -2.45 3.43 -10.16 -0.03 -2.48 16 8 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 9 C 0.52 16.39 7.14 87.66 0.63 17.01 16 10 O -0.58 -23.55 15.48 -3.03 -0.05 -23.60 16 11 N -0.70 -21.60 5.12 -436.50 -2.24 -23.83 16 12 C 0.14 5.20 2.72 46.27 0.13 5.32 16 13 H 0.07 3.01 7.58 -2.38 -0.02 2.99 16 14 C 0.19 9.74 5.13 86.73 0.44 10.18 16 15 N -0.63 -32.96 3.39 -692.01 -2.35 -35.31 16 16 C -0.24 -13.89 10.27 84.03 0.86 -13.03 16 17 H 0.09 4.65 7.84 -2.91 -0.02 4.63 16 18 C -0.07 -3.96 5.48 84.86 0.46 -3.49 16 19 N -0.95 -59.12 10.36 21.65 0.22 -58.90 16 20 Si 0.98 46.53 29.56 68.60 2.03 48.56 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.13 5.27 6.71 86.85 0.58 5.85 16 25 C -0.09 -2.98 3.25 -9.32 -0.03 -3.01 16 26 H 0.09 2.67 8.01 -2.39 -0.02 2.65 16 27 C -0.13 -3.06 9.30 71.98 0.67 -2.39 16 28 C 0.12 2.43 6.36 86.85 0.55 2.99 16 29 H 0.10 0.39 6.60 -2.39 -0.02 0.38 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.66 8.02 -2.39 -0.02 0.64 16 33 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 34 H 0.07 1.63 7.44 -2.38 -0.02 1.62 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.41 10.05 8.53 -92.71 -0.79 9.26 16 37 H -0.01 -0.75 7.61 -2.39 -0.02 -0.77 16 38 H 0.02 1.13 7.17 -2.39 -0.02 1.11 16 39 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 42 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.73 8.04 -2.39 -0.02 1.71 16 46 H 0.06 1.43 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -82.95 370.13 1.43 -81.52 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.18 Total: 15.90 kcal Atomic # 6 Polarization: 20.54 SS G_CDS: 6.38 Total: 26.93 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -7.06 Total: -131.52 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.10 Total: -41.39 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -82.95 1.43 -81.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080856271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.727 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds