Wall clock time and date at job start Fri Apr 10 2020 18:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.64430 * 2 1 4 4 C 1.54325 * 110.72156 * 236.66357 * 2 1 3 5 5 N 1.47016 * 107.27186 * 219.44057 * 4 2 1 6 6 C 1.36939 * 125.64445 * 178.98177 * 5 4 2 7 7 H 1.08000 * 120.00316 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99753 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99945 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47014 * 59.99739 * 10 8 6 12 12 H 1.48494 * 109.47066 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47016 * 300.00150 * 10 8 6 14 14 C 1.47418 * 108.70692 * 358.94246 * 5 4 2 15 15 C 1.54913 * 104.82992 * 24.12817 * 14 5 4 16 16 H 1.08994 * 111.00799 * 81.06682 * 15 14 5 17 17 N 1.46504 * 111.03382 * 204.90602 * 15 14 5 18 18 C 1.34779 * 119.99611 * 270.39101 * 17 15 14 19 19 O 1.21280 * 120.00064 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99711 * 180.02562 * 18 17 15 21 21 H 1.08998 * 109.30130 * 327.64679 * 20 18 17 22 22 C 1.52924 * 109.30032 * 87.02940 * 20 18 17 23 23 C 1.53341 * 108.67530 * 171.06378 * 22 20 18 24 24 C 1.53073 * 108.42679 * 292.46764 * 23 22 20 25 25 C 1.50179 * 109.89027 * 48.89834 * 24 23 22 26 26 O 1.21276 * 118.24748 * 162.44382 * 25 24 23 27 27 N 1.33357 * 123.50658 * 342.42219 * 25 24 23 28 28 C 1.46505 * 117.94400 * 182.24620 * 27 25 24 29 29 H 1.08999 * 109.46953 * 296.85867 * 1 2 3 30 30 H 1.09002 * 109.47115 * 56.85887 * 1 2 3 31 31 H 1.09005 * 109.47010 * 176.86120 * 1 2 3 32 32 H 1.08999 * 109.88026 * 338.86212 * 4 2 1 33 33 H 1.09006 * 109.88019 * 100.02447 * 4 2 1 34 34 H 0.97007 * 120.00137 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36858 * 265.28701 * 14 5 4 36 36 H 1.09005 * 110.37265 * 142.96237 * 14 5 4 37 37 H 0.97000 * 120.00417 * 90.39498 * 17 15 14 38 38 H 1.09000 * 109.60172 * 290.81813 * 22 20 18 39 39 H 1.09003 * 109.60603 * 51.30555 * 22 20 18 40 40 H 1.08999 * 109.67534 * 172.73363 * 23 22 20 41 41 H 1.09004 * 109.70447 * 52.21548 * 23 22 20 42 42 H 1.08996 * 109.39973 * 288.77098 * 24 23 22 43 43 H 1.09000 * 109.40159 * 169.02573 * 24 23 22 44 44 H 1.08997 * 109.46721 * 204.74157 * 28 27 25 45 45 H 1.09004 * 109.46729 * 324.73775 * 28 27 25 46 46 H 1.08995 * 109.47447 * 84.74018 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5519 -0.7364 6 6 4.0044 -2.3993 -1.4978 7 1 3.7617 -2.5543 -2.5387 8 6 5.0866 -3.0591 -0.9318 9 7 5.3821 -2.8706 0.3369 10 14 6.1236 -4.2145 -1.9706 11 1 6.7157 -3.4625 -3.1060 12 1 7.2104 -4.7886 -1.1373 13 1 5.2694 -5.3103 -2.4945 14 6 3.4634 -1.2486 0.6896 15 6 2.0790 -0.7934 1.2151 16 1 1.4452 -1.6511 1.4403 17 7 2.2207 0.0735 2.3876 18 6 2.2508 -0.4639 3.6232 19 8 2.1610 -1.6651 3.7644 20 6 2.3960 0.4278 4.8294 21 1 3.0043 1.2932 4.5665 22 6 1.0129 0.9042 5.2752 23 6 1.1515 1.6205 6.6239 24 6 1.5468 0.5875 7.6821 25 6 2.6983 -0.2384 7.1847 26 8 3.3424 -0.8714 7.9941 27 7 3.0500 -0.3133 5.9005 28 6 4.1633 -1.1964 5.5440 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3130 -1.4785 -1.5750 33 1 2.3741 -0.1057 -1.9976 34 1 6.1386 -3.3313 0.7324 35 1 4.1932 -0.4465 0.7992 36 1 3.7961 -2.1405 1.2205 37 1 2.2928 1.0342 2.2747 38 1 0.6074 1.5938 4.5348 39 1 0.3480 0.0471 5.3829 40 1 0.2004 2.0786 6.8956 41 1 1.9221 2.3884 6.5547 42 1 0.6970 -0.0630 7.8882 43 1 1.8387 1.1011 8.5981 44 1 4.6177 -0.8512 4.6154 45 1 4.9077 -1.1819 6.3401 46 1 3.7928 -2.2128 5.4114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080869571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:37 Heat of formation + Delta-G solvation = -69.824225 kcal Electronic energy + Delta-G solvation = -26959.139651 eV Core-core repulsion = 23269.254965 eV Total energy + Delta-G solvation = -3689.884686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03524 -40.60779 -39.19255 -37.27300 -35.71626 -35.00384 -34.30868 -32.17132 -31.31135 -29.36149 -28.18113 -27.40127 -26.22841 -25.05529 -23.23443 -22.50688 -21.62966 -21.10115 -19.65117 -18.93780 -18.50024 -17.85473 -17.55012 -17.03294 -16.90655 -16.42761 -15.90040 -15.57468 -15.26677 -15.22444 -14.85364 -14.41151 -14.39291 -14.34258 -14.15696 -13.91577 -13.59123 -13.37239 -13.26993 -13.02759 -12.98959 -12.81940 -12.60527 -12.54674 -12.26381 -12.01818 -11.95001 -11.83769 -11.80211 -11.64293 -11.39558 -11.24385 -10.77031 -10.67272 -10.00730 -9.81316 -8.90577 -7.78700 -5.24795 1.39666 1.43544 1.46938 1.53413 1.54239 1.92475 2.19376 2.48310 3.30895 3.45746 3.54435 3.66859 3.69692 3.84129 3.88186 4.06165 4.06608 4.12262 4.21330 4.26234 4.49202 4.54546 4.58329 4.63919 4.68599 4.81567 4.82066 4.87615 4.91148 4.97636 5.03634 5.06805 5.11247 5.21911 5.24996 5.30132 5.33189 5.45484 5.51305 5.65196 5.80788 6.27704 6.33956 6.59796 7.04225 7.06616 7.29104 7.76526 8.38029 9.21071 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.003986 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.779113 B = 7022.235322 C = 8474.735392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.103 0.897 4 C 0.131 3.869 5 N -0.627 5.627 6 C -0.242 4.242 7 H 0.085 0.915 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.277 1.277 14 C 0.156 3.844 15 C 0.139 3.861 16 H 0.064 0.936 17 N -0.692 5.692 18 C 0.498 3.502 19 O -0.575 6.575 20 C 0.130 3.870 21 H 0.130 0.870 22 C -0.123 4.123 23 C -0.109 4.109 24 C -0.129 4.129 25 C 0.507 3.493 26 O -0.605 6.605 27 N -0.588 5.588 28 C 0.091 3.909 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.033 0.967 34 H 0.244 0.756 35 H -0.007 1.007 36 H 0.058 0.942 37 H 0.418 0.582 38 H 0.129 0.871 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 17.288 9.020 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.121 0.879 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.102 0.898 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.199 1.199 12 H -0.223 1.223 13 H -0.203 1.203 14 C 0.029 3.971 15 C 0.032 3.968 16 H 0.082 0.918 17 N -0.344 5.344 18 C 0.284 3.716 19 O -0.453 6.453 20 C 0.023 3.977 21 H 0.148 0.852 22 C -0.161 4.161 23 C -0.147 4.147 24 C -0.169 4.169 25 C 0.298 3.702 26 O -0.487 6.487 27 N -0.320 5.320 28 C -0.053 4.053 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.256 0.744 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.789 16.007 9.518 22.591 hybrid contribution 1.385 -1.185 -0.785 1.984 sum -11.404 14.822 8.733 20.640 Atomic orbital electron populations 1.21703 0.91869 1.01779 1.03347 1.22376 0.97503 0.99124 0.92053 0.87905 1.21628 0.88534 0.93299 0.95942 1.44683 1.32041 1.50836 1.07819 1.19449 1.06593 1.17450 0.93589 0.89765 1.25666 1.00373 1.02453 0.97516 1.70099 1.30096 1.47039 1.12429 0.85146 0.77916 0.78776 0.77485 1.19898 1.22322 1.20335 1.21885 0.92192 0.98212 0.84762 1.22124 0.96992 0.92957 0.84705 0.91807 1.45616 1.73286 1.11123 1.04365 1.21355 0.75833 0.88990 0.85458 1.90766 1.50258 1.17667 1.86595 1.21313 0.98940 0.93271 0.84173 0.85234 1.21986 0.91543 1.02002 1.00545 1.21689 1.05185 0.96691 0.91096 1.21770 0.95037 0.98482 1.01592 1.21191 0.86192 0.82036 0.80776 1.90686 1.55477 1.48416 1.54101 1.47108 1.33330 1.44611 1.06935 1.21475 0.89428 0.93899 1.00482 0.90533 0.90433 0.94020 0.95454 0.94937 0.94673 0.98927 0.92360 0.74394 0.85269 0.91681 0.86565 0.89187 0.87384 0.86603 0.91485 0.91063 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.16 71.98 0.66 -2.08 16 2 C -0.09 -2.60 3.19 -9.60 -0.03 -2.63 16 3 H 0.10 2.39 7.99 -2.39 -0.02 2.37 16 4 C 0.13 5.07 6.84 86.73 0.59 5.67 16 5 N -0.63 -32.34 3.39 -691.99 -2.35 -34.69 16 6 C -0.24 -13.75 10.27 84.03 0.86 -12.89 16 7 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 8 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 9 N -0.95 -58.81 10.09 21.65 0.22 -58.59 16 10 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.16 7.75 5.58 86.86 0.49 8.23 16 15 C 0.14 5.00 2.82 46.38 0.13 5.13 16 16 H 0.06 2.69 7.54 -2.39 -0.02 2.67 16 17 N -0.69 -18.24 5.22 -435.95 -2.27 -20.51 16 18 C 0.50 14.73 6.00 87.66 0.53 15.25 16 19 O -0.57 -24.09 14.69 -3.03 -0.04 -24.13 16 20 C 0.13 2.59 3.07 44.36 0.14 2.73 16 21 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 22 C -0.12 -1.42 5.29 30.68 0.16 -1.26 16 23 C -0.11 -0.82 6.03 30.73 0.19 -0.63 16 24 C -0.13 -1.92 6.03 29.71 0.18 -1.74 16 25 C 0.51 13.83 7.47 87.71 0.66 14.49 16 26 O -0.60 -22.21 16.27 -3.02 -0.05 -22.25 16 27 N -0.59 -16.24 2.95 -831.51 -2.45 -18.70 16 28 C 0.09 3.09 8.66 127.77 1.11 4.20 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.02 8.06 -2.38 -0.02 1.00 16 32 H 0.03 1.06 7.76 -2.39 -0.02 1.04 16 33 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.06 3.55 5.87 -2.38 -0.01 3.54 16 37 H 0.42 7.09 8.54 -92.71 -0.79 6.30 16 38 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 40 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.09 0.49 8.13 -2.38 -0.02 0.47 16 42 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.07 2.27 7.54 -2.39 -0.02 2.25 16 45 H 0.07 2.39 7.31 -2.39 -0.02 2.38 16 46 H 0.04 1.46 7.42 -2.39 -0.02 1.44 16 Total: -1.00 -86.09 363.06 1.37 -84.72 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.18 Total: 14.24 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 6.12 Total: 31.00 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -6.86 Total: -132.48 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.09 Total: -46.39 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -86.09 1.37 -84.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080869571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -86.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds