Wall clock time and date at job start Fri Apr 10 2020 18:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46759 * 124.35025 * 269.73181 * 3 2 1 5 5 C 1.54299 * 105.56360 * 196.88583 * 4 3 2 6 6 H 1.08996 * 110.78316 * 93.00887 * 5 4 3 7 7 C 1.50700 * 111.11635 * 216.70500 * 5 4 3 8 8 O 1.21281 * 120.00090 * 354.01617 * 7 5 4 9 9 N 1.34782 * 120.00221 * 174.00746 * 7 5 4 10 10 C 1.47022 * 125.64969 * 179.71432 * 9 7 5 11 11 C 1.54329 * 107.26400 * 178.85329 * 10 9 7 12 12 H 1.08999 * 110.66729 * 96.52313 * 11 10 9 13 13 C 1.52998 * 110.85159 * 219.67722 * 11 10 9 14 14 C 1.55159 * 103.02502 * 338.14266 * 11 10 9 15 15 H 1.08993 * 111.03710 * 277.22043 * 14 11 10 16 16 N 1.46496 * 111.00457 * 153.37858 * 14 11 10 17 17 C 1.36938 * 119.99647 * 161.35270 * 16 14 11 18 18 H 1.08008 * 120.00164 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00131 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00114 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99501 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46881 * 90.00473 * 21 19 17 23 23 H 1.48501 * 109.46892 * 209.99711 * 21 19 17 24 24 H 1.48494 * 109.47511 * 329.99872 * 21 19 17 25 25 C 1.47422 * 125.64715 * 0.02893 * 9 7 5 26 26 C 1.54625 * 101.84251 * 334.92996 * 5 4 3 27 27 C 1.34418 * 124.34625 * 90.02148 * 3 2 1 28 28 O 1.21277 * 124.94389 * 359.58088 * 27 3 2 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 31 31 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 33 33 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 34 34 H 1.09000 * 110.24326 * 316.00993 * 4 3 2 35 35 H 1.08996 * 110.24967 * 78.00498 * 4 3 2 36 36 H 1.08992 * 109.88218 * 298.39951 * 10 9 7 37 37 H 1.09006 * 109.88068 * 59.56728 * 10 9 7 38 38 H 1.08995 * 109.47401 * 173.69910 * 13 11 10 39 39 H 1.09004 * 109.47032 * 293.68956 * 13 11 10 40 40 H 1.08994 * 109.47463 * 53.69016 * 13 11 10 41 41 H 0.96998 * 120.00265 * 341.34920 * 16 14 11 42 42 H 0.96999 * 119.99972 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36613 * 322.92969 * 25 9 7 44 44 H 1.09004 * 110.36443 * 85.13512 * 25 9 7 45 45 H 1.09004 * 110.48950 * 265.90472 * 26 5 4 46 46 H 1.09002 * 110.49044 * 143.26236 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2998 2.1601 -1.2116 5 6 3.1741 3.3442 -0.7489 6 1 4.2329 3.1041 -0.8454 7 6 2.8368 4.5991 -1.5122 8 8 2.0511 4.5548 -2.4350 9 7 3.4080 5.7707 -1.1692 10 6 3.1745 7.0635 -1.8291 11 6 4.0158 8.1186 -1.0803 12 1 4.9650 8.2858 -1.5895 13 6 3.2420 9.4307 -0.9372 14 6 4.2452 7.4626 0.3069 15 1 3.3902 7.6256 0.9630 16 7 5.4787 7.9566 0.9239 17 6 5.6750 7.8136 2.2716 18 1 4.9207 7.3362 2.8795 19 6 6.8435 8.2821 2.8564 20 7 7.0324 8.1442 4.1516 21 14 8.1484 9.1071 1.8047 22 1 7.8862 10.5676 1.7459 23 1 9.4877 8.8683 2.4000 24 1 8.1087 8.5414 0.4323 25 6 4.3754 5.9668 -0.0742 26 6 2.7697 3.4753 0.7378 27 6 2.2716 2.0961 1.1098 28 8 2.1222 1.6941 2.2442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8411 1.5501 -1.9348 35 1 1.3711 2.5281 -1.6477 36 1 3.4871 7.0092 -2.8719 37 1 2.1178 7.3245 -1.7698 38 1 3.8084 10.1201 -0.3112 39 1 3.0925 9.8736 -1.9220 40 1 2.2740 9.2333 -0.4769 41 1 6.1563 8.3850 0.3778 42 1 7.8488 8.4720 4.5602 43 1 4.1191 5.3349 0.7762 44 1 5.3865 5.7476 -0.4175 45 1 1.9748 4.2121 0.8535 46 1 3.6332 3.7458 1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082542871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:50 Heat of formation + Delta-G solvation = -50.022465 kcal Electronic energy + Delta-G solvation = -26469.705305 eV Core-core repulsion = 22780.679288 eV Total energy + Delta-G solvation = -3689.026017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02658 -39.63748 -37.86128 -36.35624 -34.37548 -34.13064 -32.58454 -31.13610 -29.94713 -28.11161 -27.81227 -26.56380 -24.18751 -23.74704 -22.70291 -21.25985 -20.23197 -19.70457 -19.04163 -17.67058 -17.48894 -16.82976 -16.31159 -15.97613 -15.68683 -14.85634 -14.78861 -14.34350 -14.13973 -13.78584 -13.69304 -13.62080 -13.38827 -13.28773 -13.20468 -12.80480 -12.67164 -12.47193 -12.21834 -12.09948 -11.88695 -11.72841 -11.56057 -11.34002 -11.28640 -11.20529 -10.87175 -10.73957 -10.45259 -10.15948 -10.00737 -9.73271 -9.68601 -9.11131 -8.90766 -8.54621 -7.45917 -5.89190 -3.28195 2.46991 2.54726 2.70462 3.02951 3.27898 3.30815 3.37889 4.05300 4.16871 4.43454 4.47408 4.68585 4.73644 4.83261 4.90206 4.94021 5.00486 5.03055 5.12360 5.26076 5.32336 5.39210 5.44482 5.46737 5.53442 5.59833 5.62489 5.65856 5.71002 5.72420 5.76874 5.92786 6.01145 6.03814 6.19400 6.24947 6.31582 6.36167 6.41280 6.66322 6.92378 7.55424 7.83910 8.04384 8.10413 8.28984 9.05092 9.77058 9.94448 11.28176 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.003809 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.519335 B = 7349.185563 C = 8657.221005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.120 3.880 5 C -0.119 4.119 6 H 0.118 0.882 7 C 0.540 3.460 8 O -0.548 6.548 9 N -0.608 5.608 10 C 0.117 3.883 11 C -0.117 4.117 12 H 0.082 0.918 13 C -0.136 4.136 14 C 0.183 3.817 15 H 0.075 0.925 16 N -0.734 5.734 17 C -0.255 4.255 18 H 0.093 0.907 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.063 3.937 26 C -0.147 4.147 27 C 0.521 3.479 28 O -0.526 6.526 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.364 0.636 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -10.010 -14.069 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.357 5.357 4 C -0.003 4.003 5 C -0.141 4.141 6 H 0.136 0.864 7 C 0.327 3.673 8 O -0.427 6.427 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.137 4.137 12 H 0.101 0.899 13 C -0.194 4.194 14 C 0.071 3.929 15 H 0.093 0.907 16 N -0.376 5.376 17 C -0.385 4.385 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.573 5.573 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.063 4.063 26 C -0.188 4.188 27 C 0.309 3.691 28 O -0.402 6.402 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.198 0.802 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.128 0.872 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.892 -10.428 -13.683 19.845 hybrid contribution 1.233 0.577 -0.714 1.537 sum -8.659 -9.851 -14.397 19.476 Atomic orbital electron populations 1.22167 0.95768 1.02281 1.02658 1.21338 0.94450 0.80955 1.03132 1.48379 1.66148 1.13979 1.07224 1.21899 1.00372 0.91133 0.86873 1.22126 1.02768 0.93792 0.95418 0.86373 1.19666 0.80352 0.83460 0.83778 1.90687 1.35634 1.85737 1.30594 1.48452 1.44161 1.07310 1.34173 1.21984 1.00085 0.82111 0.96354 1.22529 0.99040 0.94736 0.97397 0.89946 1.21687 1.00101 0.96272 1.01332 1.21320 0.91079 0.89107 0.91403 0.90716 1.42640 1.17693 1.70682 1.06558 1.19049 1.03394 1.33909 0.82147 0.88917 1.24682 0.97837 1.00533 0.95451 1.69696 1.27398 1.51097 1.09090 0.86593 0.82323 0.79894 0.79905 1.20950 1.21653 1.20283 1.23691 0.91824 1.02246 0.88508 1.22475 1.04688 0.96490 0.95098 1.20801 0.76627 0.87275 0.84387 1.90740 1.53408 1.75037 1.21010 0.91448 0.92168 0.92289 0.90318 0.89942 0.89830 0.89264 0.91757 0.91299 0.91409 0.93024 0.92495 0.80221 0.92836 0.90058 0.91038 0.87220 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.12 1.08 6.65 -4.04 -0.03 1.06 16 3 N -0.62 -6.78 2.93 -172.53 -0.51 -7.28 16 4 C 0.12 1.18 6.67 -3.22 -0.02 1.15 16 5 C -0.12 -1.28 3.02 -90.24 -0.27 -1.55 16 6 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 7 C 0.54 7.14 7.13 -10.98 -0.08 7.06 16 8 O -0.55 -8.58 15.90 5.56 0.09 -8.49 16 9 N -0.61 -8.12 3.33 -170.52 -0.57 -8.69 16 10 C 0.12 1.49 6.48 -3.06 -0.02 1.47 16 11 C -0.12 -1.56 3.16 -88.78 -0.28 -1.84 16 12 H 0.08 1.10 7.99 -51.93 -0.42 0.68 16 13 C -0.14 -1.65 9.16 37.16 0.34 -1.31 16 14 C 0.18 3.00 3.14 -65.78 -0.21 2.79 16 15 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 16 N -0.73 -15.22 5.08 -51.35 -0.26 -15.48 16 17 C -0.26 -6.55 10.47 -15.06 -0.16 -6.71 16 18 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 19 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 20 N -0.93 -27.67 13.97 55.49 0.78 -26.89 16 21 Si 0.88 20.63 27.73 -169.99 -4.71 15.91 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -5.99 6.52 56.52 0.37 -5.62 16 25 C 0.06 0.91 6.30 -2.53 -0.02 0.90 16 26 C -0.15 -1.76 5.02 -26.74 -0.13 -1.90 16 27 C 0.52 7.14 8.02 -10.86 -0.09 7.05 16 28 O -0.53 -9.23 17.59 5.56 0.10 -9.14 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.96 7.05 -51.93 -0.37 0.60 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.36 7.48 5.57 -40.82 -0.23 7.25 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.08 1.17 4.93 -51.93 -0.26 0.91 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.11 1.33 7.89 -51.93 -0.41 0.92 16 46 H 0.12 1.45 6.62 -51.93 -0.34 1.11 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -32.29 367.88 -7.71 -39.99 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.49 Total: 7.15 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.68 Total: 7.38 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.56 Total: -58.35 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.19 Total: -17.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.71 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.29 -7.71 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.030 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds