Wall clock time and date at job start Fri Apr 10 2020 18:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46759 * 124.35025 * 269.73181 * 3 2 1 5 5 C 1.54299 * 105.56360 * 196.88583 * 4 3 2 6 6 H 1.08996 * 110.78316 * 93.00887 * 5 4 3 7 7 C 1.50700 * 111.11635 * 216.70500 * 5 4 3 8 8 O 1.21281 * 120.00090 * 354.01617 * 7 5 4 9 9 N 1.34782 * 120.00221 * 174.00746 * 7 5 4 10 10 C 1.47022 * 125.64969 * 179.71432 * 9 7 5 11 11 C 1.54329 * 107.26400 * 178.85329 * 10 9 7 12 12 H 1.08999 * 110.66729 * 96.52313 * 11 10 9 13 13 C 1.52998 * 110.85159 * 219.67722 * 11 10 9 14 14 C 1.55159 * 103.02502 * 338.14266 * 11 10 9 15 15 H 1.08993 * 111.03710 * 277.22043 * 14 11 10 16 16 N 1.46496 * 111.00457 * 153.37858 * 14 11 10 17 17 C 1.36938 * 119.99647 * 161.35270 * 16 14 11 18 18 H 1.08008 * 120.00164 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00131 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00114 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99501 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46881 * 90.00473 * 21 19 17 23 23 H 1.48501 * 109.46892 * 209.99711 * 21 19 17 24 24 H 1.48494 * 109.47511 * 329.99872 * 21 19 17 25 25 C 1.47422 * 125.64715 * 0.02893 * 9 7 5 26 26 C 1.54625 * 101.84251 * 334.92996 * 5 4 3 27 27 C 1.34418 * 124.34625 * 90.02148 * 3 2 1 28 28 O 1.21277 * 124.94389 * 359.58088 * 27 3 2 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 31 31 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 32 32 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 33 33 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 34 34 H 1.09000 * 110.24326 * 316.00993 * 4 3 2 35 35 H 1.08996 * 110.24967 * 78.00498 * 4 3 2 36 36 H 1.08992 * 109.88218 * 298.39951 * 10 9 7 37 37 H 1.09006 * 109.88068 * 59.56728 * 10 9 7 38 38 H 1.08995 * 109.47401 * 173.69910 * 13 11 10 39 39 H 1.09004 * 109.47032 * 293.68956 * 13 11 10 40 40 H 1.08994 * 109.47463 * 53.69016 * 13 11 10 41 41 H 0.96998 * 120.00265 * 341.34920 * 16 14 11 42 42 H 0.96999 * 119.99972 * 180.02562 * 20 19 17 43 43 H 1.08999 * 110.36613 * 322.92969 * 25 9 7 44 44 H 1.09004 * 110.36443 * 85.13512 * 25 9 7 45 45 H 1.09004 * 110.48950 * 265.90472 * 26 5 4 46 46 H 1.09002 * 110.49044 * 143.26236 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2998 2.1601 -1.2116 5 6 3.1741 3.3442 -0.7489 6 1 4.2329 3.1041 -0.8454 7 6 2.8368 4.5991 -1.5122 8 8 2.0511 4.5548 -2.4350 9 7 3.4080 5.7707 -1.1692 10 6 3.1745 7.0635 -1.8291 11 6 4.0158 8.1186 -1.0803 12 1 4.9650 8.2858 -1.5895 13 6 3.2420 9.4307 -0.9372 14 6 4.2452 7.4626 0.3069 15 1 3.3902 7.6256 0.9630 16 7 5.4787 7.9566 0.9239 17 6 5.6750 7.8136 2.2716 18 1 4.9207 7.3362 2.8795 19 6 6.8435 8.2821 2.8564 20 7 7.0324 8.1442 4.1516 21 14 8.1484 9.1071 1.8047 22 1 7.8862 10.5676 1.7459 23 1 9.4877 8.8683 2.4000 24 1 8.1087 8.5414 0.4323 25 6 4.3754 5.9668 -0.0742 26 6 2.7697 3.4753 0.7378 27 6 2.2716 2.0961 1.1098 28 8 2.1222 1.6941 2.2442 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8411 1.5501 -1.9348 35 1 1.3711 2.5281 -1.6477 36 1 3.4871 7.0092 -2.8719 37 1 2.1178 7.3245 -1.7698 38 1 3.8084 10.1201 -0.3112 39 1 3.0925 9.8736 -1.9220 40 1 2.2740 9.2333 -0.4769 41 1 6.1563 8.3850 0.3778 42 1 7.8488 8.4720 4.5602 43 1 4.1191 5.3349 0.7762 44 1 5.3865 5.7476 -0.4175 45 1 1.9748 4.2121 0.8535 46 1 3.6332 3.7458 1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082542871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:49 Heat of formation + Delta-G solvation = -71.707951 kcal Electronic energy + Delta-G solvation = -26470.645658 eV Core-core repulsion = 22780.679288 eV Total energy + Delta-G solvation = -3689.966370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04556 -40.74627 -39.06745 -37.44612 -35.95958 -35.08579 -33.86574 -32.85343 -30.79884 -29.48316 -28.83168 -27.55273 -25.70727 -24.72116 -23.76788 -22.57547 -21.51936 -20.69223 -20.08973 -19.48051 -18.55070 -17.78807 -17.42543 -17.18137 -16.69853 -16.29471 -15.93746 -15.78152 -15.12831 -14.97372 -14.78935 -14.70272 -14.57944 -14.47176 -14.34659 -14.19458 -13.82038 -13.46340 -13.29299 -13.11200 -12.97512 -12.93920 -12.89386 -12.51688 -12.42335 -12.24157 -12.06045 -12.01765 -11.90452 -11.77721 -11.39587 -11.16966 -11.00226 -10.78559 -9.82389 -9.70646 -9.30688 -7.98463 -5.34105 1.39788 1.42330 1.45657 1.48050 1.52795 1.76668 2.03865 2.52088 3.04506 3.24372 3.31550 3.38341 3.68598 3.72322 3.80767 3.88183 4.05095 4.09076 4.11071 4.22811 4.35487 4.41298 4.45042 4.49022 4.51794 4.60762 4.66966 4.74202 4.79135 4.85755 4.89872 4.92234 4.95844 5.11905 5.12208 5.20114 5.24740 5.33883 5.47654 5.53058 5.81370 5.97377 6.24570 6.45102 6.99842 7.04212 7.10751 7.84038 8.02935 9.22440 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.003809 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.519335 B = 7349.185563 C = 8657.221005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.614 5.614 4 C 0.124 3.876 5 C -0.111 4.111 6 H 0.139 0.861 7 C 0.543 3.457 8 O -0.568 6.568 9 N -0.608 5.608 10 C 0.119 3.881 11 C -0.105 4.105 12 H 0.091 0.909 13 C -0.134 4.134 14 C 0.171 3.829 15 H 0.061 0.939 16 N -0.735 5.735 17 C -0.229 4.229 18 H 0.060 0.940 19 C -0.060 4.060 20 N -0.983 5.983 21 Si 0.951 3.049 22 H -0.281 1.281 23 H -0.303 1.303 24 H -0.245 1.245 25 C 0.075 3.925 26 C -0.143 4.143 27 C 0.514 3.486 28 O -0.575 6.575 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.369 0.631 42 H 0.257 0.743 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 -10.452 -17.693 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.347 5.347 4 C 0.001 3.999 5 C -0.133 4.133 6 H 0.157 0.843 7 C 0.332 3.668 8 O -0.448 6.448 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.125 4.125 12 H 0.109 0.891 13 C -0.192 4.192 14 C 0.061 3.939 15 H 0.079 0.921 16 N -0.377 5.377 17 C -0.360 4.360 18 H 0.078 0.922 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.778 3.222 22 H -0.207 1.207 23 H -0.230 1.230 24 H -0.169 1.169 25 C -0.051 4.051 26 C -0.184 4.184 27 C 0.302 3.698 28 O -0.455 6.455 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.203 0.797 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.840 -10.888 -17.415 22.774 hybrid contribution 1.039 0.666 0.380 1.291 sum -8.800 -10.223 -17.035 21.729 Atomic orbital electron populations 1.22126 0.95321 1.03393 1.01522 1.21595 0.94829 0.79869 1.04261 1.48506 1.64734 1.14634 1.06802 1.21999 1.00271 0.90999 0.86585 1.22139 1.04207 0.93151 0.93760 0.84309 1.19936 0.79636 0.83786 0.83466 1.90686 1.36432 1.86026 1.31675 1.48438 1.43912 1.07886 1.33758 1.22035 1.00194 0.81381 0.96783 1.22457 0.99821 0.95258 0.94921 0.89100 1.21676 0.99617 0.95362 1.02519 1.21486 0.88779 0.90743 0.92861 0.92116 1.42533 1.19285 1.71162 1.04756 1.18980 1.01850 1.31145 0.84045 0.92190 1.25466 1.00631 1.02453 0.96582 1.69886 1.28141 1.53788 1.11446 0.85480 0.78406 0.78757 0.79518 1.20723 1.22985 1.16905 1.23350 0.92285 1.00471 0.88951 1.22392 1.04273 0.95588 0.96115 1.21054 0.76429 0.87975 0.84321 1.90709 1.55767 1.76062 1.22944 0.89291 0.94820 0.91780 0.86888 0.91078 0.86720 0.89872 0.90418 0.90941 0.92986 0.90484 0.92430 0.79652 0.93454 0.90300 0.90782 0.87709 0.86834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.12 1.82 6.65 86.38 0.57 2.40 16 3 N -0.61 -12.45 2.93 -818.35 -2.40 -14.85 16 4 C 0.12 2.08 6.67 86.77 0.58 2.66 16 5 C -0.11 -2.14 3.02 -10.55 -0.03 -2.17 16 6 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 7 C 0.54 13.07 7.13 87.66 0.63 13.70 16 8 O -0.57 -16.34 15.90 -3.03 -0.05 -16.39 16 9 N -0.61 -14.84 3.33 -811.78 -2.70 -17.54 16 10 C 0.12 2.66 6.48 86.73 0.56 3.23 16 11 C -0.11 -2.52 3.16 -9.60 -0.03 -2.55 16 12 H 0.09 2.09 7.99 -2.39 -0.02 2.07 16 13 C -0.13 -2.94 9.16 71.98 0.66 -2.28 16 14 C 0.17 5.42 3.14 46.38 0.15 5.57 16 15 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 16 N -0.73 -29.66 5.08 -316.38 -1.61 -31.27 16 17 C -0.23 -11.90 10.47 84.03 0.88 -11.02 16 18 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 19 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 20 N -0.98 -60.65 13.97 21.65 0.30 -60.35 16 21 Si 0.95 42.41 27.73 68.60 1.90 44.31 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.24 -9.49 6.52 99.48 0.65 -8.85 16 25 C 0.07 2.06 6.30 86.86 0.55 2.61 16 26 C -0.14 -3.38 5.02 30.59 0.15 -3.22 16 27 C 0.51 14.09 8.02 87.90 0.71 14.80 16 28 O -0.57 -20.93 17.59 -3.02 -0.05 -20.98 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.32 7.93 -2.38 -0.02 1.30 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.58 7.05 -2.39 -0.02 1.56 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.61 7.77 -2.38 -0.02 1.59 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.24 8.07 -2.39 -0.02 1.22 16 41 H 0.37 14.25 5.57 -92.71 -0.52 13.74 16 42 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.08 2.22 4.93 -2.39 -0.01 2.21 16 44 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.10 2.55 7.89 -2.38 -0.02 2.53 16 46 H 0.11 2.80 6.62 -2.39 -0.02 2.78 16 Total: -1.00 -72.06 367.88 2.37 -69.69 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.40 Total: 28.27 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.57 Total: 19.11 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.40 Total: -124.00 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.10 Total: -37.37 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.90 Total: 44.31 kcal Total: -72.06 2.37 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.022 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds