Wall clock time and date at job start Fri Apr 10 2020 18:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46757 * 124.35009 * 90.00088 * 3 2 1 5 5 C 1.54481 * 105.47296 * 162.98117 * 4 3 2 6 6 H 1.09006 * 110.96869 * 267.29371 * 5 4 3 7 7 C 1.50700 * 110.96965 * 143.56940 * 5 4 3 8 8 O 1.21280 * 120.00146 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99834 * 180.02562 * 7 5 4 10 10 C 1.47426 * 125.64924 * 180.02562 * 9 7 5 11 11 C 1.54902 * 104.83447 * 204.09094 * 10 9 7 12 12 H 1.09000 * 111.00313 * 81.05863 * 11 10 9 13 13 C 1.53001 * 111.00617 * 204.87767 * 11 10 9 14 14 C 1.55155 * 101.57974 * 322.98918 * 11 10 9 15 15 H 1.09002 * 110.71768 * 276.96042 * 14 11 10 16 16 N 1.46500 * 110.72005 * 153.86586 * 14 11 10 17 17 C 1.36937 * 120.00073 * 154.99803 * 16 14 11 18 18 H 1.08005 * 120.00089 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00354 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99495 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00482 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47071 * 59.99968 * 21 19 17 23 23 H 1.48500 * 109.47418 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47220 * 300.00394 * 21 19 17 25 25 C 1.47023 * 125.64834 * 359.68733 * 9 7 5 26 26 C 1.54624 * 101.76463 * 25.41475 * 5 4 3 27 27 C 1.34422 * 124.34716 * 269.69506 * 3 2 1 28 28 O 1.21279 * 124.94045 * 0.39240 * 27 3 2 29 29 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 34 34 H 1.08997 * 110.24800 * 281.98126 * 4 3 2 35 35 H 1.09002 * 110.25141 * 43.89162 * 4 3 2 36 36 H 1.09004 * 110.36244 * 322.93051 * 10 9 7 37 37 H 1.08999 * 110.37096 * 85.13704 * 10 9 7 38 38 H 1.08997 * 109.47291 * 58.54395 * 13 11 10 39 39 H 1.08999 * 109.47109 * 178.54927 * 13 11 10 40 40 H 1.08997 * 109.46715 * 298.54547 * 13 11 10 41 41 H 0.96994 * 120.00178 * 334.99369 * 16 14 11 42 42 H 0.96998 * 119.99731 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.88625 * 298.39794 * 25 9 7 44 44 H 1.08998 * 109.87716 * 59.56726 * 25 9 7 45 45 H 1.09003 * 110.49063 * 93.88264 * 26 5 4 46 46 H 1.09002 * 110.48462 * 216.39652 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2116 5 6 3.1744 3.3442 0.7486 6 1 4.2332 3.1033 0.8447 7 6 2.8380 4.5987 1.5128 8 8 1.9723 4.5778 2.3619 9 7 3.4992 5.7440 1.2526 10 6 3.2730 7.0378 1.9221 11 6 3.7702 8.1002 0.9103 12 1 3.0142 8.3006 0.1511 13 6 4.1803 9.3891 1.6255 14 6 5.0034 7.3892 0.2930 15 1 5.8806 7.5188 0.9269 16 7 5.2655 7.8872 -1.0596 17 6 6.5278 7.8103 -1.5849 18 1 7.3301 7.3821 -1.0022 19 6 6.7762 8.2817 -2.8667 20 7 5.7984 8.8030 -3.5770 21 14 8.4982 8.1774 -3.5830 22 1 8.9281 6.7568 -3.6336 23 1 8.4986 8.7445 -4.9554 24 1 9.4370 8.9484 -2.7290 25 6 4.5704 5.9082 0.2590 26 6 2.7695 3.4754 -0.7379 27 6 2.2767 2.0944 -1.1098 28 8 2.1330 1.6902 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.3637 2.5308 1.6429 35 1 2.8310 1.5527 1.9389 36 1 2.2118 7.1777 2.1284 37 1 3.8487 7.0927 2.8460 38 1 4.9662 9.1694 2.3481 39 1 4.5495 10.1085 0.8945 40 1 3.3173 9.8076 2.1433 41 1 4.5450 8.2714 -1.5831 42 1 5.9720 9.1328 -4.4726 43 1 5.4141 5.2672 0.5141 44 1 4.1971 5.6559 -0.7335 45 1 1.9745 4.2122 -0.8532 46 1 3.6323 3.7482 -1.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082542872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:52 Heat of formation + Delta-G solvation = -56.495296 kcal Electronic energy + Delta-G solvation = -26384.957746 eV Core-core repulsion = 22695.651046 eV Total energy + Delta-G solvation = -3689.306700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96032 -39.56803 -37.74612 -36.32352 -34.24390 -34.04445 -32.50591 -30.79369 -29.90498 -27.87751 -27.60167 -26.48343 -24.21409 -23.76707 -22.74755 -21.35832 -20.06896 -19.59197 -18.95149 -17.44766 -17.21822 -16.85268 -16.21480 -15.92187 -15.51025 -15.04103 -14.72430 -14.11827 -14.01520 -13.82418 -13.66836 -13.58772 -13.46560 -13.17406 -13.02934 -12.68328 -12.51482 -12.33968 -12.23261 -12.13463 -11.78981 -11.53477 -11.39344 -11.27254 -11.18963 -11.04833 -10.78408 -10.66136 -10.32661 -10.11854 -10.04959 -9.80226 -9.66038 -9.04774 -8.88369 -8.46189 -7.15299 -5.89394 -3.20888 2.48895 2.59211 2.74638 3.10055 3.37318 3.42463 3.43644 4.09660 4.22184 4.46575 4.53869 4.71611 4.81157 4.88311 4.95648 5.05763 5.09079 5.13236 5.16496 5.28461 5.44048 5.47921 5.50984 5.55954 5.59219 5.66321 5.70679 5.74512 5.78412 5.85758 5.92940 5.94016 6.12463 6.18756 6.28479 6.37196 6.41937 6.45677 6.55403 6.78810 6.94065 7.57506 7.64731 8.06346 8.16221 8.27771 9.39824 9.92664 10.27264 11.32162 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003855 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.925331 B = 7260.652347 C = 8868.989058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.119 3.881 5 C -0.119 4.119 6 H 0.116 0.884 7 C 0.539 3.461 8 O -0.550 6.550 9 N -0.607 5.607 10 C 0.114 3.886 11 C -0.115 4.115 12 H 0.083 0.917 13 C -0.132 4.132 14 C 0.178 3.822 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.005 4.005 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.066 3.934 26 C -0.144 4.144 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 -11.388 12.357 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.357 5.357 4 C -0.004 4.004 5 C -0.141 4.141 6 H 0.134 0.866 7 C 0.326 3.674 8 O -0.429 6.429 9 N -0.339 5.339 10 C -0.009 4.009 11 C -0.135 4.135 12 H 0.102 0.898 13 C -0.190 4.190 14 C 0.065 3.935 15 H 0.087 0.913 16 N -0.349 5.349 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.738 3.262 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.060 4.060 26 C -0.184 4.184 27 C 0.310 3.690 28 O -0.404 6.404 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.222 0.778 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.280 -11.751 12.123 18.387 hybrid contribution 0.814 0.026 -0.632 1.031 sum -6.466 -11.725 11.492 17.645 Atomic orbital electron populations 1.22169 0.95771 1.02257 1.02680 1.21335 0.94456 0.80983 1.03097 1.48371 1.66101 1.13964 1.07263 1.21962 1.00501 0.91104 0.86847 1.22157 1.02559 0.93856 0.95497 0.86580 1.19656 0.81110 0.83586 0.83004 1.90679 1.32663 1.85015 1.34522 1.48485 1.37301 1.08942 1.39178 1.22288 1.01245 0.81813 0.95567 1.22664 0.99105 0.94472 0.97268 0.89818 1.21593 1.00483 0.96712 1.00233 1.21240 0.94689 0.88736 0.88837 0.91321 1.42349 1.09590 1.71510 1.11488 1.19181 0.86824 1.34833 0.97488 0.91025 1.24765 0.97574 1.00891 0.97014 1.69645 1.30835 1.45563 1.11391 0.86278 0.83943 0.77729 0.78253 1.21105 1.21634 1.21164 1.23509 0.88458 1.02468 0.91576 1.22359 1.04718 0.96327 0.94994 1.20801 0.76545 0.87308 0.84365 1.90733 1.53563 1.75048 1.21045 0.92266 0.92181 0.91462 0.90332 0.89972 0.89096 0.89919 0.90888 0.91509 0.92802 0.91377 0.93209 0.77834 0.93212 0.92056 0.90416 0.87305 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.12 1.11 6.65 -4.04 -0.03 1.09 16 3 N -0.62 -6.98 2.93 -172.42 -0.51 -7.49 16 4 C 0.12 1.21 6.71 -3.13 -0.02 1.19 16 5 C -0.12 -1.33 2.91 -90.14 -0.26 -1.60 16 6 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 7 C 0.54 7.44 7.11 -10.98 -0.08 7.36 16 8 O -0.55 -8.91 15.76 5.56 0.09 -8.82 16 9 N -0.61 -8.50 3.33 -170.52 -0.57 -9.06 16 10 C 0.11 1.52 6.37 -2.53 -0.02 1.51 16 11 C -0.12 -1.67 3.27 -88.48 -0.29 -1.96 16 12 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 13 C -0.13 -1.74 9.30 37.16 0.35 -1.39 16 14 C 0.18 3.03 3.08 -66.09 -0.20 2.83 16 15 H 0.07 1.19 7.96 -51.93 -0.41 0.77 16 16 N -0.71 -15.78 5.15 -51.64 -0.27 -16.04 16 17 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 18 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.07 1.00 6.02 -3.06 -0.02 0.98 16 26 C -0.14 -1.81 5.38 -26.75 -0.14 -1.95 16 27 C 0.52 7.36 8.02 -10.86 -0.09 7.28 16 28 O -0.53 -9.43 17.59 5.56 0.10 -9.34 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 34 H 0.09 1.02 6.96 -51.93 -0.36 0.66 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 37 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 38 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.39 9.34 7.76 -40.82 -0.32 9.02 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.28 6.42 -51.93 -0.33 0.94 16 45 H 0.11 1.42 7.89 -51.93 -0.41 1.01 16 46 H 0.12 1.50 7.29 -51.93 -0.38 1.12 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -31.12 373.02 -8.14 -39.26 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.65 Total: 7.89 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.67 Total: 7.49 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.61 Total: -58.31 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.19 Total: -18.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.12 -8.14 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.234 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds