Wall clock time and date at job start Fri Apr 10 2020 18:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46757 * 124.35009 * 90.00088 * 3 2 1 5 5 C 1.54481 * 105.47296 * 162.98117 * 4 3 2 6 6 H 1.09006 * 110.96869 * 267.29371 * 5 4 3 7 7 C 1.50700 * 110.96965 * 143.56940 * 5 4 3 8 8 O 1.21280 * 120.00146 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99834 * 180.02562 * 7 5 4 10 10 C 1.47426 * 125.64924 * 180.02562 * 9 7 5 11 11 C 1.54902 * 104.83447 * 204.09094 * 10 9 7 12 12 H 1.09000 * 111.00313 * 81.05863 * 11 10 9 13 13 C 1.53001 * 111.00617 * 204.87767 * 11 10 9 14 14 C 1.55155 * 101.57974 * 322.98918 * 11 10 9 15 15 H 1.09002 * 110.71768 * 276.96042 * 14 11 10 16 16 N 1.46500 * 110.72005 * 153.86586 * 14 11 10 17 17 C 1.36937 * 120.00073 * 154.99803 * 16 14 11 18 18 H 1.08005 * 120.00089 * 0.02562 * 17 16 14 19 19 C 1.38817 * 120.00354 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99495 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00482 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47071 * 59.99968 * 21 19 17 23 23 H 1.48500 * 109.47418 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47220 * 300.00394 * 21 19 17 25 25 C 1.47023 * 125.64834 * 359.68733 * 9 7 5 26 26 C 1.54624 * 101.76463 * 25.41475 * 5 4 3 27 27 C 1.34422 * 124.34716 * 269.69506 * 3 2 1 28 28 O 1.21279 * 124.94045 * 0.39240 * 27 3 2 29 29 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 34 34 H 1.08997 * 110.24800 * 281.98126 * 4 3 2 35 35 H 1.09002 * 110.25141 * 43.89162 * 4 3 2 36 36 H 1.09004 * 110.36244 * 322.93051 * 10 9 7 37 37 H 1.08999 * 110.37096 * 85.13704 * 10 9 7 38 38 H 1.08997 * 109.47291 * 58.54395 * 13 11 10 39 39 H 1.08999 * 109.47109 * 178.54927 * 13 11 10 40 40 H 1.08997 * 109.46715 * 298.54547 * 13 11 10 41 41 H 0.96994 * 120.00178 * 334.99369 * 16 14 11 42 42 H 0.96998 * 119.99731 * 179.97438 * 20 19 17 43 43 H 1.08992 * 109.88625 * 298.39794 * 25 9 7 44 44 H 1.08998 * 109.87716 * 59.56726 * 25 9 7 45 45 H 1.09003 * 110.49063 * 93.88264 * 26 5 4 46 46 H 1.09002 * 110.48462 * 216.39652 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2944 2.1620 1.2116 5 6 3.1744 3.3442 0.7486 6 1 4.2332 3.1033 0.8447 7 6 2.8380 4.5987 1.5128 8 8 1.9723 4.5778 2.3619 9 7 3.4992 5.7440 1.2526 10 6 3.2730 7.0378 1.9221 11 6 3.7702 8.1002 0.9103 12 1 3.0142 8.3006 0.1511 13 6 4.1803 9.3891 1.6255 14 6 5.0034 7.3892 0.2930 15 1 5.8806 7.5188 0.9269 16 7 5.2655 7.8872 -1.0596 17 6 6.5278 7.8103 -1.5849 18 1 7.3301 7.3821 -1.0022 19 6 6.7762 8.2817 -2.8667 20 7 5.7984 8.8030 -3.5770 21 14 8.4982 8.1774 -3.5830 22 1 8.9281 6.7568 -3.6336 23 1 8.4986 8.7445 -4.9554 24 1 9.4370 8.9484 -2.7290 25 6 4.5704 5.9082 0.2590 26 6 2.7695 3.4754 -0.7379 27 6 2.2767 2.0944 -1.1098 28 8 2.1330 1.6902 -2.2442 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.3637 2.5308 1.6429 35 1 2.8310 1.5527 1.9389 36 1 2.2118 7.1777 2.1284 37 1 3.8487 7.0927 2.8460 38 1 4.9662 9.1694 2.3481 39 1 4.5495 10.1085 0.8945 40 1 3.3173 9.8076 2.1433 41 1 4.5450 8.2714 -1.5831 42 1 5.9720 9.1328 -4.4726 43 1 5.4141 5.2672 0.5141 44 1 4.1971 5.6559 -0.7335 45 1 1.9745 4.2122 -0.8532 46 1 3.6323 3.7482 -1.3456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082542872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:01:51 Heat of formation + Delta-G solvation = -76.524313 kcal Electronic energy + Delta-G solvation = -26385.826269 eV Core-core repulsion = 22695.651046 eV Total energy + Delta-G solvation = -3690.175223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01059 -40.72213 -39.00024 -37.43677 -35.83459 -35.03887 -33.79767 -32.46190 -30.78526 -29.13127 -28.83360 -27.54108 -25.87056 -24.73459 -23.80681 -22.62558 -21.37078 -20.60609 -20.04399 -19.06761 -18.50171 -17.86262 -17.39504 -17.08449 -16.63043 -16.29549 -16.11292 -15.43947 -15.31705 -15.00554 -14.83704 -14.60632 -14.55892 -14.43313 -14.20921 -14.01324 -13.56755 -13.44216 -13.23260 -13.02175 -12.93404 -12.84891 -12.79178 -12.51249 -12.42120 -12.23174 -12.12696 -12.01433 -11.99142 -11.65034 -11.40453 -11.21443 -10.93225 -10.77544 -9.82062 -9.63872 -9.02096 -7.91245 -5.20383 1.38681 1.48657 1.52441 1.53482 1.59323 1.78753 2.05825 2.59389 3.07582 3.27355 3.40841 3.47395 3.76535 3.80772 3.86134 3.93474 4.06002 4.11480 4.22725 4.27835 4.39292 4.44667 4.49060 4.50989 4.54545 4.64734 4.69013 4.74316 4.79086 4.86206 4.91736 4.94048 4.96283 5.13841 5.19479 5.24107 5.26925 5.36853 5.51551 5.53114 5.59111 5.96610 6.29218 6.49026 7.00166 7.05043 7.37414 8.10202 8.32726 9.31389 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003855 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.925331 B = 7260.652347 C = 8868.989058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.613 5.613 4 C 0.123 3.877 5 C -0.110 4.110 6 H 0.139 0.861 7 C 0.542 3.458 8 O -0.571 6.571 9 N -0.607 5.607 10 C 0.118 3.882 11 C -0.107 4.107 12 H 0.068 0.932 13 C -0.127 4.127 14 C 0.170 3.830 15 H 0.073 0.927 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.965 3.035 22 H -0.278 1.278 23 H -0.303 1.303 24 H -0.278 1.278 25 C 0.079 3.921 26 C -0.140 4.140 27 C 0.515 3.485 28 O -0.575 6.575 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 -12.850 15.091 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.346 5.346 4 C 0.000 4.000 5 C -0.132 4.132 6 H 0.157 0.843 7 C 0.330 3.670 8 O -0.451 6.451 9 N -0.339 5.339 10 C -0.005 4.005 11 C -0.127 4.127 12 H 0.086 0.914 13 C -0.185 4.185 14 C 0.059 3.941 15 H 0.091 0.909 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.100 0.900 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.230 1.230 24 H -0.204 1.204 25 C -0.047 4.047 26 C -0.180 4.180 27 C 0.303 3.697 28 O -0.455 6.455 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.132 0.868 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.608 -13.249 14.958 21.046 hybrid contribution 0.529 0.457 -1.348 1.518 sum -6.079 -12.792 13.610 19.642 Atomic orbital electron populations 1.22132 0.95373 1.03401 1.01490 1.21601 0.94792 0.79824 1.04315 1.48496 1.64668 1.14654 1.06787 1.22060 1.00325 0.90972 0.86628 1.22171 1.04149 0.93126 0.93711 0.84277 1.19960 0.80394 0.83944 0.82680 1.90677 1.33430 1.85357 1.35638 1.48484 1.37098 1.09435 1.38886 1.22303 1.01635 0.80933 0.95613 1.22561 0.97422 0.95478 0.97232 0.91367 1.21551 1.01774 0.95354 0.99818 1.21457 0.96079 0.90058 0.86467 0.90862 1.42477 1.08315 1.71964 1.13248 1.19592 0.88081 1.32184 0.97137 0.89958 1.25472 1.00591 1.02189 0.97991 1.69799 1.32587 1.48011 1.11353 0.85336 0.80502 0.77792 0.76861 1.20415 1.22965 1.20376 1.23127 0.89229 1.00990 0.91307 1.22267 1.04182 0.95467 0.96129 1.21013 0.76392 0.87924 0.84335 1.90701 1.55871 1.76025 1.22933 0.91830 0.94875 0.89227 0.86814 0.91011 0.89881 0.86586 0.90713 0.89661 0.91479 0.93716 0.91019 0.79348 0.94205 0.90384 0.91937 0.88223 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 71.98 0.74 -1.83 16 2 C 0.12 1.85 6.65 86.38 0.57 2.42 16 3 N -0.61 -12.72 2.93 -817.99 -2.40 -15.12 16 4 C 0.12 2.13 6.71 86.83 0.58 2.71 16 5 C -0.11 -2.21 2.91 -10.48 -0.03 -2.24 16 6 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16 7 C 0.54 13.72 7.11 87.66 0.62 14.34 16 8 O -0.57 -17.18 15.76 -3.03 -0.05 -17.23 16 9 N -0.61 -15.72 3.33 -811.78 -2.70 -18.42 16 10 C 0.12 2.88 6.37 86.85 0.55 3.43 16 11 C -0.11 -2.97 3.27 -9.40 -0.03 -3.00 16 12 H 0.07 2.12 8.01 -2.39 -0.02 2.11 16 13 C -0.13 -3.13 9.30 71.98 0.67 -2.46 16 14 C 0.17 5.59 3.08 46.18 0.14 5.73 16 15 H 0.07 2.38 7.96 -2.39 -0.02 2.36 16 16 N -0.72 -32.12 5.15 -317.30 -1.64 -33.76 16 17 C -0.24 -11.93 9.96 84.03 0.84 -11.09 16 18 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 19 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 20 N -0.97 -56.60 13.06 21.65 0.28 -56.32 16 21 Si 0.97 43.88 29.55 68.60 2.03 45.91 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.08 2.27 6.02 86.73 0.52 2.79 16 26 C -0.14 -3.47 5.38 30.58 0.16 -3.30 16 27 C 0.52 14.44 8.02 87.90 0.70 15.15 16 28 O -0.58 -21.15 17.59 -3.03 -0.05 -21.21 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.33 7.92 -2.39 -0.02 1.32 16 34 H 0.08 1.66 6.96 -2.39 -0.02 1.64 16 35 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 37 H 0.09 1.83 8.04 -2.39 -0.02 1.81 16 38 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.37 18.51 7.76 -92.71 -0.72 17.79 16 42 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.06 2.02 6.42 -2.39 -0.02 2.00 16 45 H 0.10 2.64 7.89 -2.39 -0.02 2.62 16 46 H 0.11 2.86 7.29 -2.39 -0.02 2.84 16 Total: -1.00 -68.43 373.02 2.24 -66.19 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.25 Total: 30.60 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.52 Total: 19.35 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -6.45 Total: -123.62 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.10 Total: -38.44 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.43 2.24 -66.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082542872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.333 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds